Wall clock time and date at job start Sat Apr 11 2020 04:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47057 * 2 1 4 4 C 1.52994 * 109.47172 * 120.00023 * 2 1 3 5 5 C 1.53002 * 109.47135 * 65.00297 * 4 2 1 6 6 C 1.50701 * 109.47060 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00206 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00107 * 179.97438 * 6 5 4 9 9 C 1.47480 * 127.03837 * 180.02562 * 8 6 5 10 10 C 1.54003 * 107.08556 * 205.41798 * 9 8 6 11 11 H 1.09002 * 110.33034 * 117.69048 * 10 9 8 12 12 C 1.53004 * 110.32441 * 239.79947 * 10 9 8 13 13 N 1.46499 * 109.47198 * 293.54612 * 12 10 9 14 14 C 1.36939 * 119.99933 * 180.27608 * 13 12 10 15 15 H 1.08001 * 119.99700 * 359.72658 * 14 13 12 16 16 C 1.38810 * 120.00095 * 179.71972 * 14 13 12 17 17 N 1.31612 * 120.00054 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99751 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47517 * 89.99708 * 18 16 14 20 20 H 1.48502 * 109.46736 * 209.99481 * 18 16 14 21 21 H 1.48496 * 109.47375 * 329.99177 * 18 16 14 22 22 C 1.54618 * 105.04725 * 358.69158 * 10 9 8 23 23 H 1.09002 * 110.73611 * 96.48835 * 22 10 9 24 24 C 1.52996 * 110.74313 * 219.81744 * 22 10 9 25 25 F 1.39899 * 109.47087 * 59.99383 * 24 22 10 26 26 F 1.39898 * 109.47476 * 179.97438 * 24 22 10 27 27 F 1.39905 * 109.47078 * 299.99799 * 24 22 10 28 28 C 1.48125 * 127.03043 * 359.96643 * 8 6 5 29 29 H 1.09002 * 109.46854 * 300.00026 * 1 2 3 30 30 H 1.09001 * 109.47140 * 60.00103 * 1 2 3 31 31 H 1.09000 * 109.46937 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47348 * 240.00121 * 2 1 3 33 33 H 1.09002 * 109.47317 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47248 * 300.00650 * 3 2 1 35 35 H 1.09007 * 109.46606 * 60.00131 * 3 2 1 36 36 H 1.09001 * 109.47509 * 304.99942 * 4 2 1 37 37 H 1.09004 * 109.47257 * 184.99944 * 4 2 1 38 38 H 1.08994 * 109.47168 * 60.00121 * 5 4 2 39 39 H 1.09005 * 109.46938 * 299.99431 * 5 4 2 40 40 H 1.08995 * 109.91244 * 86.05181 * 9 8 6 41 41 H 1.09003 * 110.06936 * 324.86507 * 9 8 6 42 42 H 1.09009 * 109.46730 * 173.54399 * 12 10 9 43 43 H 1.08998 * 109.46846 * 53.54944 * 12 10 9 44 44 H 0.97001 * 119.99790 * 359.97438 * 13 12 10 45 45 H 0.96998 * 120.00381 * 180.02562 * 17 16 14 46 46 H 1.09000 * 110.65706 * 259.18139 * 28 8 6 47 47 H 1.08996 * 110.66381 * 22.29502 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1955 1.1879 6 6 2.1382 -2.9060 2.4180 7 8 2.7587 -2.2935 3.2610 8 7 1.8975 -4.2219 2.5819 9 6 2.3134 -5.0665 3.7172 10 6 2.4004 -6.5133 3.1968 11 1 3.4216 -6.8851 3.2805 12 6 1.4416 -7.4165 3.9752 13 7 1.8890 -7.5198 5.3664 14 6 1.1849 -8.2856 6.2570 15 1 0.2974 -8.8099 5.9347 16 6 1.6121 -8.3882 7.5737 17 7 0.9352 -9.1238 8.4297 18 14 3.1469 -7.4809 8.1310 19 1 2.7733 -6.1288 8.6184 20 1 3.7995 -8.2397 9.2281 21 1 4.0883 -7.3530 6.9897 22 6 1.9758 -6.4321 1.7123 23 1 2.8498 -6.3714 1.0637 24 6 1.0998 -7.6278 1.3331 25 9 -0.0489 -7.6361 2.1316 26 9 0.7310 -7.5276 -0.0127 27 9 1.8159 -8.8128 1.5338 28 6 1.1600 -5.1156 1.6592 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 1.6054 -0.2618 2.1370 37 1 3.1263 -0.6443 1.2951 38 1 2.0699 -2.6549 0.3002 39 1 0.5489 -2.2724 1.1420 40 1 1.5755 -5.0032 4.5169 41 1 3.2878 -4.7451 4.0852 42 1 1.4290 -8.4083 3.5229 43 1 0.4383 -6.9915 3.9467 44 1 2.6863 -7.0492 5.6556 45 1 1.2334 -9.1952 9.3500 46 1 0.1422 -5.2790 2.0136 47 1 1.1555 -4.7063 0.6490 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700929036.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:38 Heat of formation + Delta-G solvation = -181.141458 kcal Electronic energy + Delta-G solvation = -30734.702920 eV Core-core repulsion = 26116.651995 eV Total energy + Delta-G solvation = -4618.050925 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.22055 -47.69543 -47.55687 -40.36325 -38.34309 -36.75107 -34.88933 -32.74712 -31.31217 -31.29171 -29.39877 -27.50305 -26.38958 -25.85614 -24.33104 -23.05406 -21.93543 -20.48387 -20.22513 -19.53978 -18.53916 -18.20786 -17.93566 -17.22648 -16.93177 -16.17786 -15.85477 -15.30706 -15.11305 -14.68772 -14.49981 -14.32638 -14.29773 -14.11766 -14.00731 -13.89134 -13.75916 -13.61944 -13.36731 -13.29642 -12.79805 -12.69009 -12.57807 -12.44172 -12.26625 -12.13352 -11.93843 -11.89886 -11.62623 -11.26735 -11.10676 -10.98162 -10.93695 -10.86755 -10.81432 -10.58996 -10.11848 -9.95326 -9.60334 -8.92985 -8.89449 -7.27520 -5.78027 -3.14907 2.45317 2.51049 2.87360 3.36955 3.40011 3.45528 3.60148 3.67129 3.90939 4.22610 4.44127 4.48674 4.49701 4.55095 4.58062 4.67595 4.73328 4.90436 4.92829 5.04764 5.09186 5.12356 5.23359 5.31766 5.36534 5.42643 5.49885 5.50282 5.54143 5.57968 5.64914 5.70699 5.74517 5.87181 5.88356 5.97605 6.02542 6.08486 6.11763 6.43752 6.55824 7.32368 7.96219 8.00447 8.39770 9.17623 9.89678 10.08014 11.40117 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.011119 B = 0.003421 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.703203 B = 8181.642726 C =10078.607431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.100 4.100 5 C -0.138 4.138 6 C 0.531 3.469 7 O -0.535 6.535 8 N -0.620 5.620 9 C 0.110 3.890 10 C -0.106 4.106 11 H 0.100 0.900 12 C 0.144 3.856 13 N -0.753 5.753 14 C -0.245 4.245 15 H 0.091 0.909 16 C 0.007 3.993 17 N -0.932 5.932 18 Si 0.882 3.118 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.277 1.277 22 C -0.148 4.148 23 H 0.126 0.874 24 C 0.464 3.536 25 F -0.168 7.168 26 F -0.187 7.187 27 F -0.173 7.173 28 C 0.109 3.891 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.040 0.960 43 H 0.047 0.953 44 H 0.360 0.640 45 H 0.260 0.740 46 H 0.092 0.908 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.880 14.550 -23.001 27.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.116 4.116 3 C -0.205 4.205 4 C -0.138 4.138 5 C -0.178 4.178 6 C 0.321 3.679 7 O -0.411 6.411 8 N -0.355 5.355 9 C -0.012 4.012 10 C -0.126 4.126 11 H 0.118 0.882 12 C 0.017 3.983 13 N -0.399 5.399 14 C -0.374 4.374 15 H 0.109 0.891 16 C -0.189 4.189 17 N -0.580 5.580 18 Si 0.713 3.287 19 H -0.209 1.209 20 H -0.217 1.217 21 H -0.203 1.203 22 C -0.169 4.169 23 H 0.144 0.856 24 C 0.410 3.590 25 F -0.150 7.150 26 F -0.169 7.169 27 F -0.154 7.154 28 C -0.015 4.015 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.058 0.942 43 H 0.064 0.936 44 H 0.193 0.807 45 H 0.070 0.930 46 H 0.110 0.890 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.034 14.828 -22.444 26.920 hybrid contribution 0.969 0.115 0.456 1.077 sum 2.003 14.943 -21.988 26.660 Atomic orbital electron populations 1.21925 0.95215 1.01873 1.01859 1.21145 0.95951 0.96402 0.98130 1.21828 1.01050 0.95840 1.01764 1.21430 1.01840 0.92413 0.98140 1.21762 1.03009 0.96954 0.96076 1.20433 0.79392 0.79755 0.88350 1.90733 1.40855 1.64656 1.44899 1.48793 1.55571 1.08073 1.23042 1.22203 1.02360 0.87416 0.89200 1.22444 1.02909 0.96524 0.90681 0.88215 1.21437 0.95041 0.96180 0.85625 1.42674 1.31653 1.59731 1.05828 1.19010 1.07206 1.21581 0.89621 0.89103 1.24660 0.98538 0.99696 0.96032 1.69693 1.40709 1.43394 1.04190 0.86585 0.84085 0.79838 0.78235 1.20935 1.21664 1.20347 1.23601 0.99562 0.92446 1.01242 0.85555 1.20138 0.79910 0.84817 0.74161 1.93233 1.52264 1.96604 1.72855 1.93174 1.92408 1.96296 1.34993 1.93207 1.77839 1.49936 1.94433 1.22497 0.96111 0.87535 0.95371 0.92528 0.92771 0.92464 0.91200 0.92644 0.92744 0.92573 0.91020 0.91148 0.88955 0.88607 0.89410 0.90089 0.94224 0.93570 0.80687 0.93001 0.89012 0.88766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 8.95 37.16 0.33 -0.58 16 2 C -0.10 -0.63 2.92 -90.62 -0.26 -0.90 16 3 C -0.15 -0.94 9.19 37.16 0.34 -0.59 16 4 C -0.10 -0.85 3.97 -26.73 -0.11 -0.96 16 5 C -0.14 -1.12 4.38 -27.88 -0.12 -1.24 16 6 C 0.53 6.60 7.89 -10.99 -0.09 6.51 16 7 O -0.54 -8.88 16.32 5.56 0.09 -8.79 16 8 N -0.62 -7.35 3.29 -169.74 -0.56 -7.91 16 9 C 0.11 1.57 6.30 -2.98 -0.02 1.56 16 10 C -0.11 -1.45 2.86 -89.24 -0.25 -1.70 16 11 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 12 C 0.14 2.62 3.86 -4.04 -0.02 2.61 16 13 N -0.75 -17.39 5.17 -59.90 -0.31 -17.70 16 14 C -0.24 -6.87 10.47 -15.06 -0.16 -7.03 16 15 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 16 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 17 N -0.93 -29.32 13.97 55.49 0.78 -28.54 16 18 Si 0.88 22.13 27.74 -169.99 -4.71 17.41 16 19 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 21 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 22 C -0.15 -1.50 3.06 -88.73 -0.27 -1.77 16 23 H 0.13 1.00 8.14 -51.93 -0.42 0.57 16 24 C 0.46 5.45 2.40 37.16 0.09 5.54 16 25 F -0.17 -2.31 12.74 2.25 0.03 -2.28 16 26 F -0.19 -1.97 17.23 2.25 0.04 -1.93 16 27 F -0.17 -2.37 15.47 2.25 0.03 -2.33 16 28 C 0.11 0.99 6.27 -2.11 -0.01 0.97 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.32 6.57 -51.93 -0.34 -0.02 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 38 H 0.09 0.56 7.91 -51.93 -0.41 0.15 16 39 H 0.10 0.64 6.57 -51.93 -0.34 0.30 16 40 H 0.09 1.45 7.61 -51.93 -0.40 1.05 16 41 H 0.08 1.21 8.06 -51.93 -0.42 0.79 16 42 H 0.04 0.76 5.39 -51.92 -0.28 0.48 16 43 H 0.05 0.86 6.66 -51.93 -0.35 0.52 16 44 H 0.36 8.12 5.37 -40.82 -0.22 7.90 16 45 H 0.26 7.78 8.31 -40.82 -0.34 7.45 16 46 H 0.09 0.86 7.31 -51.93 -0.38 0.48 16 47 H 0.09 0.56 7.24 -51.93 -0.38 0.19 16 LS Contribution 377.04 15.07 5.68 5.68 Total: -1.00 -33.60 377.04 -6.90 -40.50 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -7.32 Total: 3.38 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -0.64 Total: 2.51 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -0.09 Total: -54.15 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.09 Total: -8.79 kcal Atomic # 9 Polarization: -6.65 SS G_CDS: 0.10 Total: -6.55 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.71 Total: 17.41 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.60 -6.90 -40.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700929036.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.643 kcal (2) G-P(sol) polarization free energy of solvation -33.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds