Wall clock time and date at job start Sat Apr 11 2020 04:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47195 * 2 1 4 4 C 1.53006 * 109.46965 * 119.99812 * 2 1 3 5 5 C 1.53004 * 109.46815 * 174.99858 * 4 2 1 6 6 C 1.50704 * 109.46535 * 180.02562 * 5 4 2 7 7 O 1.21276 * 120.00364 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99616 * 180.02562 * 6 5 4 9 9 C 1.47525 * 125.63672 * 179.97438 * 8 6 5 10 10 C 1.54906 * 104.78530 * 204.15063 * 9 8 6 11 11 H 1.08996 * 111.00609 * 204.89892 * 10 9 8 12 12 C 1.53004 * 111.00259 * 81.08987 * 10 9 8 13 13 N 1.46499 * 109.47198 * 69.58240 * 12 10 9 14 14 C 1.36939 * 119.99933 * 180.27608 * 13 12 10 15 15 H 1.08001 * 119.99700 * 359.72658 * 14 13 12 16 16 C 1.38810 * 120.00095 * 179.71972 * 14 13 12 17 17 N 1.31624 * 119.99740 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00044 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47201 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47080 * 120.00466 * 18 16 14 21 21 H 1.48506 * 109.47018 * 240.00565 * 18 16 14 22 22 C 1.55157 * 101.61590 * 322.99900 * 10 9 8 23 23 H 1.09003 * 110.71462 * 277.15501 * 22 10 9 24 24 C 1.52997 * 110.72208 * 154.06324 * 22 10 9 25 25 F 1.39894 * 109.47429 * 59.99311 * 24 22 10 26 26 F 1.39893 * 109.47339 * 179.97438 * 24 22 10 27 27 F 1.39903 * 109.46697 * 299.99603 * 24 22 10 28 28 C 1.47027 * 125.64861 * 0.02562 * 8 6 5 29 29 H 1.09001 * 109.47157 * 300.00205 * 1 2 3 30 30 H 1.08995 * 109.46878 * 60.00446 * 1 2 3 31 31 H 1.09005 * 109.47154 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47157 * 239.99794 * 2 1 3 33 33 H 1.08995 * 109.46843 * 299.99575 * 3 2 1 34 34 H 1.09001 * 109.47236 * 59.99843 * 3 2 1 35 35 H 1.09006 * 109.46934 * 179.97438 * 3 2 1 36 36 H 1.08999 * 109.46989 * 55.00214 * 4 2 1 37 37 H 1.08996 * 109.47198 * 294.99879 * 4 2 1 38 38 H 1.08999 * 109.47051 * 60.00394 * 5 4 2 39 39 H 1.08996 * 109.47255 * 299.99987 * 5 4 2 40 40 H 1.09006 * 110.36790 * 85.33813 * 9 8 6 41 41 H 1.09000 * 110.40868 * 322.98713 * 9 8 6 42 42 H 1.09009 * 109.46730 * 309.58027 * 12 10 9 43 43 H 1.08998 * 109.46846 * 189.58572 * 12 10 9 44 44 H 0.97001 * 119.99790 * 359.97438 * 13 12 10 45 45 H 0.96998 * 119.99409 * 179.97438 * 17 16 14 46 46 H 1.09001 * 109.87667 * 59.49692 * 28 8 6 47 47 H 1.08998 * 109.88112 * 298.33086 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8311 1.1880 6 6 4.0670 -1.5420 2.4183 7 8 3.2827 -1.9229 3.2612 8 7 5.3880 -1.7537 2.5822 9 6 6.0134 -2.4326 3.7329 10 6 7.4639 -1.8901 3.7714 11 1 8.1324 -2.5968 4.2629 12 6 7.5197 -0.5217 4.4536 13 7 7.2466 -0.6779 5.8844 14 6 7.2374 0.4196 6.7034 15 1 7.4359 1.3996 6.2953 16 6 6.9730 0.2724 8.0581 17 7 6.7315 -0.9221 8.5555 18 14 6.9612 1.7693 9.1755 19 1 7.2603 2.9852 8.3773 20 1 5.6229 1.9072 9.8041 21 1 7.9905 1.6054 10.2334 22 6 7.7934 -1.7718 2.2598 23 1 8.1137 -2.7334 1.8586 24 6 8.8631 -0.7044 2.0209 25 9 10.0293 -1.0500 2.7119 26 9 9.1402 -0.6200 0.6523 27 9 8.3982 0.5326 2.4801 28 6 6.4441 -1.3453 1.6443 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6767 1.9562 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4424 0.0005 36 1 1.6053 -1.7198 1.2952 37 1 1.7516 -0.1583 2.1370 38 1 3.9994 0.1675 1.1421 39 1 3.8531 -1.3940 0.3003 40 1 6.0160 -3.5120 3.5811 41 1 5.4891 -2.1795 4.6544 42 1 6.7716 0.1359 4.0105 43 1 8.5105 -0.0883 4.3179 44 1 7.0680 -1.5581 6.2508 45 1 6.5471 -1.0250 9.5022 46 1 6.4230 -0.2637 1.5105 47 1 6.3005 -1.8425 0.6850 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700929037.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:41 Heat of formation + Delta-G solvation = -188.523358 kcal Electronic energy + Delta-G solvation = -31018.811735 eV Core-core repulsion = 26400.440706 eV Total energy + Delta-G solvation = -4618.371028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.16413 -47.65071 -47.53174 -40.23348 -38.15931 -36.57511 -34.57311 -32.64149 -31.15438 -31.04127 -29.06129 -27.36057 -26.09861 -25.78411 -24.25907 -23.00625 -22.01462 -20.32947 -20.05396 -19.35684 -18.50687 -18.22505 -17.60367 -16.89801 -16.83647 -16.27901 -15.66401 -14.99821 -14.92719 -14.62624 -14.42987 -14.30598 -14.11429 -13.97673 -13.87375 -13.74992 -13.52162 -13.50810 -13.33078 -13.15754 -12.79867 -12.67421 -12.48551 -12.38733 -12.12947 -11.94074 -11.91367 -11.55408 -11.41833 -11.10606 -10.93741 -10.83710 -10.80151 -10.75079 -10.70229 -10.51007 -10.00764 -9.73821 -9.68599 -8.87244 -8.62517 -6.92497 -5.75416 -3.04430 2.59424 2.72388 3.03330 3.45450 3.50766 3.53202 3.63173 3.74444 3.94920 4.37536 4.52769 4.56860 4.62942 4.66337 4.70177 4.80039 4.89422 5.08371 5.08784 5.16374 5.22695 5.25631 5.39670 5.45691 5.50632 5.54786 5.59075 5.64489 5.71208 5.73402 5.87643 5.88681 5.94929 6.00870 6.06896 6.17853 6.24803 6.29636 6.31083 6.58523 6.71927 7.51015 7.72590 8.24410 8.42587 9.54282 10.08610 10.43633 11.47454 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.008096 B = 0.004105 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3457.619116 B = 6819.854323 C = 8965.066563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.152 4.152 4 C -0.101 4.101 5 C -0.138 4.138 6 C 0.529 3.471 7 O -0.530 6.530 8 N -0.615 5.615 9 C 0.114 3.886 10 C -0.102 4.102 11 H 0.107 0.893 12 C 0.152 3.848 13 N -0.729 5.729 14 C -0.238 4.238 15 H 0.070 0.930 16 C -0.012 4.012 17 N -0.932 5.932 18 Si 0.906 3.094 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C -0.147 4.147 23 H 0.129 0.871 24 C 0.464 3.536 25 F -0.175 7.175 26 F -0.188 7.188 27 F -0.169 7.169 28 C 0.112 3.888 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.102 0.898 42 H 0.028 0.972 43 H 0.032 0.968 44 H 0.383 0.617 45 H 0.255 0.745 46 H 0.080 0.920 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.789 -2.102 -22.568 22.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.209 4.209 4 C -0.139 4.139 5 C -0.177 4.177 6 C 0.318 3.682 7 O -0.406 6.406 8 N -0.350 5.350 9 C -0.008 4.008 10 C -0.122 4.122 11 H 0.125 0.875 12 C 0.025 3.975 13 N -0.373 5.373 14 C -0.369 4.369 15 H 0.088 0.912 16 C -0.208 4.208 17 N -0.580 5.580 18 Si 0.737 3.263 19 H -0.206 1.206 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.168 4.168 23 H 0.147 0.853 24 C 0.409 3.591 25 F -0.156 7.156 26 F -0.170 7.170 27 F -0.150 7.150 28 C -0.012 4.012 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.087 0.913 41 H 0.120 0.880 42 H 0.045 0.955 43 H 0.050 0.950 44 H 0.217 0.783 45 H 0.065 0.935 46 H 0.098 0.902 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.283 -2.085 -22.066 22.406 hybrid contribution 0.353 0.674 0.711 1.042 sum -2.930 -1.411 -21.354 21.600 Atomic orbital electron populations 1.21826 0.95134 1.01763 1.01736 1.21139 0.95898 0.96392 0.98123 1.21926 1.01174 0.95977 1.01829 1.21429 0.92710 1.01575 0.98141 1.21750 0.98227 1.01690 0.96072 1.20375 0.80132 0.79369 0.88343 1.90742 1.54002 1.51275 1.44588 1.48420 1.05256 1.58878 1.22438 1.22359 0.91802 0.95786 0.90893 1.22758 0.96986 1.01727 0.90687 0.87508 1.21081 0.98655 0.91231 0.86552 1.42302 1.85608 1.08016 1.01416 1.19217 1.40364 0.87936 0.89386 0.91171 1.24725 1.02494 0.96638 0.96922 1.69664 1.54863 1.20679 1.12821 0.86125 0.77194 0.82078 0.80855 1.20551 1.21843 1.21834 1.23566 0.93579 0.98416 1.01220 0.85321 1.20172 0.82582 0.82829 0.73494 1.93212 1.51075 1.91990 1.79353 1.93172 1.94553 1.96648 1.32581 1.93229 1.88177 1.45509 1.88090 1.21850 0.85137 1.01222 0.92956 0.92515 0.92843 0.92685 0.91318 0.92867 0.92446 0.92457 0.91200 0.90910 0.88721 0.89192 0.91322 0.88006 0.95462 0.95019 0.78301 0.93541 0.90203 0.90001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.19 37.16 0.34 -0.81 16 2 C -0.10 -0.79 2.92 -90.62 -0.26 -1.06 16 3 C -0.15 -1.21 8.95 37.16 0.33 -0.88 16 4 C -0.10 -1.06 3.97 -26.73 -0.11 -1.16 16 5 C -0.14 -1.41 4.65 -27.88 -0.13 -1.54 16 6 C 0.53 7.79 7.85 -10.98 -0.09 7.70 16 7 O -0.53 -10.18 16.24 5.56 0.09 -10.09 16 8 N -0.61 -8.35 3.29 -170.44 -0.56 -8.91 16 9 C 0.11 1.72 6.31 -2.48 -0.02 1.71 16 10 C -0.10 -1.49 2.76 -88.47 -0.24 -1.74 16 11 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 12 C 0.15 2.99 4.10 -4.04 -0.02 2.97 16 13 N -0.73 -18.33 5.25 -59.90 -0.31 -18.64 16 14 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 15 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 16 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 17 N -0.93 -28.41 13.06 55.49 0.72 -27.68 16 18 Si 0.91 22.85 29.55 -169.99 -5.02 17.83 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 C -0.15 -1.59 2.89 -88.79 -0.26 -1.84 16 23 H 0.13 1.01 8.14 -51.93 -0.42 0.58 16 24 C 0.46 5.67 2.35 37.16 0.09 5.75 16 25 F -0.18 -2.41 16.53 2.25 0.04 -2.37 16 26 F -0.19 -2.06 17.22 2.25 0.04 -2.02 16 27 F -0.17 -2.45 12.65 2.25 0.03 -2.42 16 28 C 0.11 1.15 5.62 -3.06 -0.02 1.13 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.44 6.56 -51.93 -0.34 0.10 16 36 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 37 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 38 H 0.09 0.89 6.56 -51.93 -0.34 0.55 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.10 1.99 7.46 -51.93 -0.39 1.60 16 42 H 0.03 0.57 7.43 -51.92 -0.39 0.18 16 43 H 0.03 0.65 5.57 -51.93 -0.29 0.36 16 44 H 0.38 10.03 7.44 -40.82 -0.30 9.73 16 45 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.08 0.82 7.14 -51.93 -0.37 0.45 16 47 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 382.25 15.07 5.76 5.76 Total: -1.00 -33.54 382.25 -7.30 -40.84 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -7.46 Total: 4.83 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -0.62 Total: 2.89 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: -0.15 Total: -55.24 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 9 Polarization: -6.92 SS G_CDS: 0.10 Total: -6.81 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.54 -7.30 -40.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700929037.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.687 kcal (2) G-P(sol) polarization free energy of solvation -33.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds