Wall clock time and date at job start Sat Apr 11 2020 04:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46944 * 2 1 4 4 C 1.52992 * 109.47397 * 119.99967 * 2 1 3 5 5 C 1.53001 * 109.47092 * 174.99854 * 4 2 1 6 6 C 1.50706 * 109.47310 * 180.02562 * 5 4 2 7 7 O 1.21277 * 119.99659 * 0.02562 * 6 5 4 8 8 N 1.34768 * 120.00205 * 180.02562 * 6 5 4 9 9 C 1.48149 * 127.83973 * 359.97265 * 8 6 5 10 10 C 1.54393 * 104.61751 * 140.41447 * 9 8 6 11 11 H 1.08997 * 110.42690 * 264.95396 * 10 9 8 12 12 C 1.53000 * 110.34131 * 142.74091 * 10 9 8 13 13 F 1.39902 * 109.46843 * 304.46279 * 12 10 9 14 14 F 1.39892 * 109.47216 * 64.46088 * 12 10 9 15 15 F 1.39893 * 109.46895 * 184.46421 * 12 10 9 16 16 C 1.54283 * 104.95913 * 23.86667 * 10 9 8 17 17 H 1.09006 * 110.34073 * 118.97441 * 16 10 9 18 18 C 1.52997 * 110.34549 * 241.12858 * 16 10 9 19 19 N 1.46505 * 109.47212 * 185.00108 * 18 16 10 20 20 C 1.36936 * 119.99992 * 179.97438 * 19 18 16 21 21 H 1.08006 * 119.99834 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00093 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00176 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00265 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46968 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47299 * 119.99957 * 24 22 20 27 27 H 1.48495 * 109.47075 * 240.00117 * 24 22 20 28 28 C 1.48147 * 127.83848 * 179.97438 * 8 6 5 29 29 H 1.09000 * 109.46983 * 299.99597 * 1 2 3 30 30 H 1.09001 * 109.47354 * 59.99779 * 1 2 3 31 31 H 1.08999 * 109.47247 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46983 * 240.00403 * 2 1 3 33 33 H 1.09004 * 109.47015 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47276 * 300.00269 * 3 2 1 35 35 H 1.09000 * 109.46951 * 60.00383 * 3 2 1 36 36 H 1.09007 * 109.46695 * 55.00242 * 4 2 1 37 37 H 1.08999 * 109.47586 * 295.00178 * 4 2 1 38 38 H 1.08998 * 109.46964 * 60.00593 * 5 4 2 39 39 H 1.09005 * 109.47290 * 299.99872 * 5 4 2 40 40 H 1.09000 * 110.40472 * 21.62932 * 9 8 6 41 41 H 1.08994 * 110.50897 * 259.25068 * 9 8 6 42 42 H 1.09002 * 109.47153 * 65.00100 * 18 16 10 43 43 H 1.09001 * 109.46832 * 305.00291 * 18 16 10 44 44 H 0.96996 * 119.99606 * 0.02562 * 19 18 16 45 45 H 0.97001 * 120.00803 * 179.97438 * 23 22 20 46 46 H 1.09000 * 110.41275 * 100.79899 * 28 8 6 47 47 H 1.09006 * 110.40750 * 338.36450 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1878 6 6 4.0673 -1.5419 2.4180 7 8 3.2829 -1.9237 3.2605 8 7 5.3881 -1.7535 2.5818 9 6 6.4905 -1.3654 1.6713 10 6 7.6217 -0.8914 2.6090 11 1 7.5867 0.1912 2.7304 12 6 8.9834 -1.3203 2.0588 13 9 8.9920 -2.7056 1.8632 14 9 9.2177 -0.6758 0.8395 15 9 9.9855 -0.9719 2.9706 16 6 7.3426 -1.5914 3.9553 17 1 8.1764 -2.2394 4.2255 18 6 7.0985 -0.5544 5.0535 19 7 6.9542 -1.2338 6.3434 20 6 6.7279 -0.5043 7.4799 21 1 6.6554 0.5719 7.4253 22 6 6.5917 -1.1479 8.7021 23 7 6.6806 -2.4594 8.7688 24 14 6.2823 -0.1529 10.2525 25 1 6.2244 1.2911 9.9106 26 1 4.9924 -0.5695 10.8590 27 1 7.3835 -0.3891 11.2203 28 6 6.0671 -2.4270 3.7132 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6054 -1.7198 1.2950 37 1 1.7517 -0.1583 2.1369 38 1 3.9994 0.1676 1.1419 39 1 3.8532 -1.3940 0.3000 40 1 6.1744 -0.5535 1.0164 41 1 6.8188 -2.2218 1.0824 42 1 6.1876 0.0019 4.8319 43 1 7.9428 0.1336 5.0976 44 1 7.0197 -2.2003 6.3924 45 1 6.5858 -2.9093 9.6229 46 1 6.3286 -3.4506 3.4447 47 1 5.4317 -2.4160 4.5988 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700929038.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:44 Heat of formation + Delta-G solvation = -196.672363 kcal Electronic energy + Delta-G solvation = -30551.202682 eV Core-core repulsion = 25932.478287 eV Total energy + Delta-G solvation = -4618.724396 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.19001 -47.68878 -47.61740 -40.18713 -38.17517 -36.61240 -34.68063 -32.61564 -31.19264 -31.11144 -29.00610 -27.40825 -26.20551 -25.80770 -24.15247 -23.24355 -21.79014 -20.37076 -20.10964 -19.38772 -18.54127 -18.19354 -17.77849 -17.21405 -16.79086 -16.00584 -15.57131 -15.20965 -14.75353 -14.61643 -14.54773 -14.36272 -14.14550 -14.07067 -13.92506 -13.80723 -13.74028 -13.57545 -13.47192 -13.28267 -12.76423 -12.73429 -12.46659 -12.45505 -12.01688 -11.90219 -11.80050 -11.64288 -11.51935 -11.13295 -10.99945 -10.90028 -10.84417 -10.77897 -10.74470 -10.56265 -10.03387 -9.76912 -9.71895 -8.91382 -8.74994 -6.95896 -5.77247 -3.06981 2.52239 2.69571 2.94178 3.44455 3.49652 3.52109 3.66963 3.72199 3.87985 4.32768 4.50224 4.53637 4.58253 4.64241 4.67981 4.84948 4.86102 4.99859 5.08999 5.14995 5.19899 5.22538 5.34416 5.41406 5.47106 5.55826 5.58930 5.61179 5.65549 5.70701 5.82079 5.84504 5.94865 5.97778 6.05914 6.13124 6.20989 6.24797 6.30188 6.57002 6.68095 7.52595 7.69548 8.20666 8.40368 9.52232 10.06265 10.40991 11.45473 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.007508 B = 0.003943 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3728.682962 B = 7100.185041 C = 9942.205063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.151 4.151 4 C -0.101 4.101 5 C -0.137 4.137 6 C 0.533 3.467 7 O -0.527 6.527 8 N -0.621 5.621 9 C 0.111 3.889 10 C -0.150 4.150 11 H 0.129 0.871 12 C 0.461 3.539 13 F -0.180 7.180 14 F -0.186 7.186 15 F -0.175 7.175 16 C -0.101 4.101 17 H 0.098 0.902 18 C 0.165 3.835 19 N -0.730 5.730 20 C -0.241 4.241 21 H 0.071 0.929 22 C -0.011 4.011 23 N -0.931 5.931 24 Si 0.907 3.093 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.109 3.891 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.023 0.977 43 H 0.025 0.975 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.072 0.928 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.497 3.937 -23.508 23.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.208 4.208 4 C -0.139 4.139 5 C -0.177 4.177 6 C 0.322 3.678 7 O -0.402 6.402 8 N -0.356 5.356 9 C -0.013 4.013 10 C -0.171 4.171 11 H 0.147 0.853 12 C 0.407 3.593 13 F -0.162 7.162 14 F -0.167 7.167 15 F -0.156 7.156 16 C -0.121 4.121 17 H 0.116 0.884 18 C 0.037 3.963 19 N -0.374 5.374 20 C -0.372 4.372 21 H 0.089 0.911 22 C -0.207 4.207 23 N -0.579 5.579 24 Si 0.738 3.262 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.013 4.013 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.101 0.899 42 H 0.041 0.959 43 H 0.042 0.958 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.090 0.910 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.075 3.877 -22.953 23.480 hybrid contribution 0.390 0.147 0.799 0.901 sum -2.684 4.024 -22.154 22.676 Atomic orbital electron populations 1.21827 0.95097 1.01831 1.01733 1.21139 0.95946 0.96342 0.98144 1.21924 1.01070 0.96018 1.01830 1.21434 0.92666 1.01685 0.98121 1.21746 0.98239 1.01563 0.96139 1.20370 0.79878 0.79314 0.88249 1.90766 1.53791 1.51073 1.44551 1.48941 1.04875 1.58807 1.22933 1.22251 0.86097 1.00968 0.92006 1.23514 0.89856 1.05153 0.98527 0.85322 1.20342 0.88359 0.75007 0.75631 1.93182 1.96895 1.30995 1.95093 1.93175 1.95603 1.81622 1.46314 1.93232 1.63869 1.91782 1.66698 1.22401 0.98927 0.98454 0.92302 0.88407 1.20654 0.97981 0.92504 0.85136 1.42297 1.87161 1.06504 1.01454 1.19211 1.41352 0.90991 0.85643 0.91141 1.24736 1.02599 0.95646 0.97747 1.69660 1.56858 1.06677 1.24721 0.86113 0.77441 0.79039 0.83557 1.20559 1.21804 1.21833 1.22498 0.92890 0.94862 0.91040 0.92518 0.92829 0.92639 0.91285 0.92525 0.92858 0.92471 0.91121 0.90910 0.88781 0.89124 0.88936 0.89884 0.95883 0.95767 0.78152 0.93488 0.90952 0.87542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.19 37.16 0.34 -0.76 16 2 C -0.10 -0.74 2.92 -90.62 -0.26 -1.00 16 3 C -0.15 -1.07 8.95 37.16 0.33 -0.74 16 4 C -0.10 -1.01 3.97 -26.73 -0.11 -1.11 16 5 C -0.14 -1.29 4.43 -27.88 -0.12 -1.42 16 6 C 0.53 7.56 7.91 -10.99 -0.09 7.47 16 7 O -0.53 -10.02 16.25 5.56 0.09 -9.93 16 8 N -0.62 -8.13 3.32 -169.30 -0.56 -8.69 16 9 C 0.11 1.05 6.25 -2.40 -0.02 1.03 16 10 C -0.15 -1.65 2.73 -89.22 -0.24 -1.89 16 11 H 0.13 1.28 7.71 -51.93 -0.40 0.88 16 12 C 0.46 5.18 2.53 37.16 0.09 5.27 16 13 F -0.18 -2.12 16.05 2.25 0.04 -2.08 16 14 F -0.19 -1.92 17.17 2.25 0.04 -1.88 16 15 F -0.17 -2.32 16.92 2.25 0.04 -2.28 16 16 C -0.10 -1.50 2.39 -89.22 -0.21 -1.72 16 17 H 0.10 1.51 7.40 -51.93 -0.38 1.12 16 18 C 0.17 3.17 5.37 -4.04 -0.02 3.15 16 19 N -0.73 -18.19 5.21 -59.91 -0.31 -18.50 16 20 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 21 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 22 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 23 N -0.93 -28.26 13.06 55.49 0.72 -27.53 16 24 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 C 0.11 1.68 6.47 -2.41 -0.02 1.67 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.37 6.57 -51.93 -0.34 0.02 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.78 8.10 -51.92 -0.42 0.35 16 37 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 38 H 0.09 0.74 6.37 -51.93 -0.33 0.41 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 0.62 7.30 -51.93 -0.38 0.24 16 41 H 0.08 0.70 7.21 -51.93 -0.37 0.33 16 42 H 0.02 0.47 8.13 -51.93 -0.42 0.04 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.38 10.04 7.61 -40.82 -0.31 9.73 16 45 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 47 H 0.11 2.09 7.31 -51.93 -0.38 1.71 16 LS Contribution 388.68 15.07 5.86 5.86 Total: -1.00 -33.02 388.68 -7.19 -40.21 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -7.51 Total: 4.55 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -0.57 Total: 2.63 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -0.15 Total: -54.72 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 0.11 Total: -6.24 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.02 -7.19 -40.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700929038.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.458 kcal (2) G-P(sol) polarization free energy of solvation -33.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds