Wall clock time and date at job start Sat Apr 11 2020 04:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00489 * 2 1 3 5 5 C 1.52999 * 109.46811 * 294.99812 * 4 2 1 6 6 C 1.50696 * 109.47144 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99862 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00235 * 180.02562 * 6 5 4 9 9 C 1.48145 * 127.83908 * 180.02562 * 8 6 5 10 10 C 1.54391 * 104.61983 * 140.41368 * 9 8 6 11 11 H 1.09003 * 110.34472 * 142.73722 * 10 9 8 12 12 C 1.53000 * 110.34225 * 264.89197 * 10 9 8 13 13 N 1.46501 * 109.46960 * 293.54123 * 12 10 9 14 14 C 1.36936 * 120.00209 * 179.97438 * 13 12 10 15 15 H 1.08003 * 119.99823 * 0.02562 * 14 13 12 16 16 C 1.38811 * 120.00324 * 180.02562 * 14 13 12 17 17 N 1.31616 * 120.00150 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99952 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47387 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47577 * 119.99935 * 18 16 14 21 21 H 1.48500 * 109.47232 * 239.99663 * 18 16 14 22 22 C 1.54282 * 104.95798 * 23.86460 * 10 9 8 23 23 H 1.08998 * 110.34220 * 241.12961 * 22 10 9 24 24 C 1.53002 * 110.34152 * 118.97689 * 22 10 9 25 25 F 1.39899 * 109.47068 * 60.00207 * 24 22 10 26 26 F 1.39898 * 109.47230 * 180.02562 * 24 22 10 27 27 F 1.39904 * 109.47099 * 299.99722 * 24 22 10 28 28 C 1.48144 * 127.83880 * 359.67720 * 8 6 5 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 34 34 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 36 36 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 37 37 H 1.09000 * 109.46904 * 175.00284 * 4 2 1 38 38 H 1.09001 * 109.47273 * 300.00152 * 5 4 2 39 39 H 1.08998 * 109.47609 * 60.00099 * 5 4 2 40 40 H 1.08996 * 110.40720 * 259.19640 * 9 8 6 41 41 H 1.09002 * 110.40841 * 21.62648 * 9 8 6 42 42 H 1.09004 * 109.47467 * 53.54285 * 12 10 9 43 43 H 1.09000 * 109.46941 * 173.54976 * 12 10 9 44 44 H 0.97003 * 119.99971 * 0.02562 * 13 12 10 45 45 H 0.96997 * 120.00570 * 180.02562 * 17 16 14 46 46 H 1.08997 * 110.40870 * 338.37468 * 28 8 6 47 47 H 1.09003 * 110.40518 * 100.80040 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6352 -2.1954 -1.1881 6 6 2.1381 -2.9059 -2.4183 7 8 2.7586 -2.2933 -3.2612 8 7 1.8973 -4.2218 -2.5822 9 6 2.3069 -5.0866 -3.7132 10 6 2.7198 -6.4203 -3.0542 11 1 2.4157 -7.2612 -3.6777 12 6 4.2315 -6.4523 -2.8201 13 7 4.9251 -6.4727 -4.1103 14 6 6.2935 -6.5022 -4.1517 15 1 6.8614 -6.5108 -3.2331 16 6 6.9508 -6.5210 -5.3742 17 7 6.2587 -6.5100 -6.4937 18 14 8.8174 -6.5619 -5.4305 19 1 9.3545 -6.5679 -4.0460 20 1 9.2646 -7.7870 -6.1406 21 1 9.3174 -5.3627 -6.1496 22 6 1.9657 -6.4500 -1.7086 23 1 2.6719 -6.4866 -0.8792 24 6 1.0208 -7.6521 -1.6548 25 9 1.7596 -8.8324 -1.7898 26 9 0.3467 -7.6610 -0.4290 27 9 0.0915 -7.5618 -2.6967 28 6 1.1691 -5.1331 -1.6691 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6054 -0.2616 -2.1371 37 1 3.1263 -0.6443 -1.2952 38 1 2.0699 -2.6549 -0.3004 39 1 0.5490 -2.2724 -1.1422 40 1 1.4707 -5.2423 -4.3948 41 1 3.1522 -4.6460 -4.2418 42 1 4.5313 -5.5663 -2.2603 43 1 4.4925 -7.3459 -2.2532 44 1 4.4150 -6.4646 -4.9354 45 1 6.7179 -6.5235 -7.3480 46 1 1.1571 -4.7276 -0.6574 47 1 0.1522 -5.2962 -2.0261 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700929039.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:48 Heat of formation + Delta-G solvation = -196.521885 kcal Electronic energy + Delta-G solvation = -30533.568786 eV Core-core repulsion = 25914.850916 eV Total energy + Delta-G solvation = -4618.717870 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.19356 -47.69082 -47.62287 -40.18575 -38.17946 -36.60905 -34.67972 -32.61197 -31.20515 -31.10572 -28.99508 -27.41866 -26.20446 -25.81405 -24.14677 -23.25299 -21.78565 -20.35605 -20.10661 -19.38066 -18.54691 -18.19293 -17.79258 -17.21341 -16.76220 -16.02041 -15.62785 -15.11565 -14.75581 -14.64444 -14.51696 -14.36392 -14.14562 -14.07644 -13.97834 -13.79456 -13.73899 -13.66524 -13.32457 -13.18113 -13.08265 -12.58494 -12.48978 -12.40493 -12.07093 -11.88471 -11.79553 -11.63506 -11.50126 -11.13791 -10.98675 -10.89603 -10.85087 -10.77618 -10.74274 -10.56167 -10.03302 -9.75857 -9.71502 -8.90941 -8.73984 -6.95830 -5.77163 -3.06863 2.51959 2.70841 2.94948 3.44550 3.49722 3.52214 3.66596 3.72555 3.87806 4.33204 4.50376 4.54228 4.58599 4.66354 4.66454 4.84234 4.86637 5.03619 5.06369 5.15382 5.19770 5.22613 5.34998 5.41009 5.47630 5.55943 5.59494 5.60402 5.65344 5.70760 5.80371 5.84454 5.95419 5.98311 6.06370 6.14109 6.20914 6.24816 6.32287 6.57015 6.67897 7.53785 7.69653 8.22034 8.40444 9.52281 10.06291 10.40951 11.45580 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.007663 B = 0.003910 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3653.129529 B = 7160.101643 C =10121.052260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.148 4.148 4 C -0.101 4.101 5 C -0.137 4.137 6 C 0.533 3.467 7 O -0.526 6.526 8 N -0.620 5.620 9 C 0.108 3.892 10 C -0.101 4.101 11 H 0.097 0.903 12 C 0.165 3.835 13 N -0.730 5.730 14 C -0.241 4.241 15 H 0.071 0.929 16 C -0.011 4.011 17 N -0.931 5.931 18 Si 0.908 3.092 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C -0.150 4.150 23 H 0.128 0.872 24 C 0.462 3.538 25 F -0.175 7.175 26 F -0.186 7.186 27 F -0.180 7.180 28 C 0.111 3.889 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.107 0.893 42 H 0.023 0.977 43 H 0.025 0.975 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.092 0.908 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.795 6.624 15.816 24.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 C -0.205 4.205 4 C -0.139 4.139 5 C -0.177 4.177 6 C 0.322 3.678 7 O -0.401 6.401 8 N -0.355 5.355 9 C -0.014 4.014 10 C -0.121 4.121 11 H 0.115 0.885 12 C 0.037 3.963 13 N -0.374 5.374 14 C -0.372 4.372 15 H 0.089 0.911 16 C -0.207 4.207 17 N -0.579 5.579 18 Si 0.739 3.261 19 H -0.206 1.206 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.171 4.171 23 H 0.146 0.854 24 C 0.407 3.593 25 F -0.156 7.156 26 F -0.167 7.167 27 F -0.162 7.162 28 C -0.013 4.013 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.090 0.910 41 H 0.126 0.874 42 H 0.041 0.959 43 H 0.043 0.957 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.111 0.889 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.274 7.077 15.411 23.504 hybrid contribution 0.656 -0.524 -0.288 0.887 sum -15.618 6.554 15.123 22.707 Atomic orbital electron populations 1.21917 0.95374 1.01729 1.01728 1.21145 0.95787 0.96435 0.98266 1.21827 1.01212 0.95814 1.01636 1.21434 1.02118 0.92404 0.97942 1.21742 1.02616 0.97002 0.96319 1.20368 0.79368 0.79778 0.88313 1.90771 1.40005 1.64550 1.44783 1.48938 1.55984 1.07798 1.22817 1.22507 1.01523 0.88483 0.88853 1.22398 0.98033 0.99031 0.92619 0.88457 1.20646 0.86772 0.98260 0.90597 1.42299 1.03900 1.89509 1.01708 1.19211 0.82505 1.42998 0.92497 0.91141 1.24739 0.97950 1.02731 0.95313 1.69658 1.34096 1.57472 0.96673 0.86111 0.85522 0.77185 0.77313 1.20560 1.21839 1.21804 1.23422 0.97519 0.91856 1.04284 0.85352 1.20333 0.80366 0.85269 0.73328 1.93232 1.76577 1.50303 1.95477 1.93177 1.81966 1.96852 1.44712 1.93183 1.67978 1.96284 1.58713 1.22161 0.95510 0.87745 0.95898 0.92855 0.92555 0.92613 0.91184 0.92830 0.92527 0.92612 0.91089 0.90934 0.89007 0.88917 0.90974 0.87434 0.95923 0.95722 0.78143 0.93484 0.88926 0.89945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 8.95 37.16 0.33 -0.67 16 2 C -0.10 -0.75 2.92 -90.62 -0.26 -1.02 16 3 C -0.15 -1.11 9.19 37.16 0.34 -0.77 16 4 C -0.10 -1.02 3.97 -26.73 -0.11 -1.12 16 5 C -0.14 -1.31 4.44 -27.89 -0.12 -1.43 16 6 C 0.53 7.63 7.91 -10.99 -0.09 7.54 16 7 O -0.53 -10.11 16.25 5.55 0.09 -10.02 16 8 N -0.62 -8.20 3.32 -169.58 -0.56 -8.77 16 9 C 0.11 1.68 6.41 -2.41 -0.02 1.67 16 10 C -0.10 -1.51 2.42 -89.22 -0.22 -1.72 16 11 H 0.10 1.49 7.40 -51.93 -0.38 1.11 16 12 C 0.16 3.17 5.42 -4.04 -0.02 3.15 16 13 N -0.73 -18.20 5.12 -59.91 -0.31 -18.50 16 14 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 15 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 16 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 17 N -0.93 -28.28 13.06 55.49 0.72 -27.56 16 18 Si 0.91 22.69 29.55 -169.99 -5.02 17.66 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 C -0.15 -1.65 2.70 -89.45 -0.24 -1.89 16 23 H 0.13 1.28 7.72 -51.93 -0.40 0.88 16 24 C 0.46 5.17 2.53 37.16 0.09 5.26 16 25 F -0.17 -2.30 16.93 2.25 0.04 -2.26 16 26 F -0.19 -1.91 17.17 2.25 0.04 -1.88 16 27 F -0.18 -2.11 16.06 2.25 0.04 -2.08 16 28 C 0.11 1.05 6.24 -2.64 -0.02 1.04 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.34 6.56 -51.93 -0.34 0.00 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 37 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 38 H 0.09 0.72 7.94 -51.93 -0.41 0.31 16 39 H 0.09 0.69 6.56 -51.93 -0.34 0.35 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.11 2.14 7.08 -51.93 -0.37 1.77 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.38 10.04 7.39 -40.82 -0.30 9.74 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.09 0.63 7.30 -51.93 -0.38 0.25 16 47 H 0.08 0.70 7.22 -51.93 -0.37 0.33 16 LS Contribution 388.16 15.07 5.85 5.85 Total: -1.00 -33.06 388.16 -7.18 -40.24 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -7.49 Total: 4.61 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -0.57 Total: 2.70 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.15 Total: -54.83 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 9 Polarization: -6.33 SS G_CDS: 0.11 Total: -6.21 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.06 -7.18 -40.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700929039.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.279 kcal (2) G-P(sol) polarization free energy of solvation -33.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds