Wall clock time and date at job start Sat Apr 11 2020 04:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00305 * 2 1 4 4 C 1.52995 * 109.47436 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.47167 * 300.00476 * 3 2 1 6 6 O 1.21276 * 119.99975 * 131.64985 * 5 3 2 7 7 N 1.34776 * 119.99737 * 311.65292 * 5 3 2 8 8 C 1.46496 * 119.99910 * 354.44669 * 7 5 3 9 9 C 1.46497 * 119.99917 * 174.45221 * 7 5 3 10 10 C 1.52997 * 109.47052 * 89.99638 * 9 7 5 11 11 H 1.09003 * 109.47390 * 60.00158 * 10 9 7 12 12 O 1.42898 * 109.47482 * 299.99665 * 10 9 7 13 13 C 1.53005 * 109.47151 * 180.02562 * 10 9 7 14 14 N 1.46504 * 109.47454 * 184.99950 * 13 10 9 15 15 C 1.36935 * 120.00218 * 179.97438 * 14 13 10 16 16 H 1.07996 * 119.99800 * 0.02562 * 15 14 13 17 17 C 1.38804 * 120.00095 * 180.02562 * 15 14 13 18 18 N 1.31625 * 120.00096 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00245 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46808 * 60.00206 * 19 17 15 21 21 H 1.48504 * 109.47197 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47258 * 300.00304 * 19 17 15 23 23 C 1.50703 * 109.46851 * 60.00064 * 3 2 1 24 24 C 1.38233 * 120.00128 * 193.96089 * 23 3 2 25 25 C 1.38238 * 119.99865 * 179.81581 * 24 23 3 26 26 C 1.38227 * 120.00175 * 0.38873 * 25 24 23 27 27 C 1.38235 * 120.00128 * 359.86168 * 26 25 24 28 28 C 1.38234 * 119.99714 * 359.95508 * 27 26 25 29 29 H 1.08997 * 109.47396 * 59.99619 * 1 2 3 30 30 H 1.09001 * 109.47131 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.47213 * 299.99524 * 1 2 3 32 32 H 1.09002 * 109.47401 * 180.02562 * 4 3 2 33 33 H 1.09002 * 109.47157 * 300.00041 * 4 3 2 34 34 H 1.09000 * 109.47246 * 60.00324 * 4 3 2 35 35 H 1.08994 * 109.47629 * 275.43428 * 8 7 5 36 36 H 1.09004 * 109.47512 * 35.43770 * 8 7 5 37 37 H 1.09002 * 109.47269 * 155.43416 * 8 7 5 38 38 H 1.08999 * 109.47044 * 329.99984 * 9 7 5 39 39 H 1.08998 * 109.47410 * 209.99991 * 9 7 5 40 40 H 0.96698 * 114.00394 * 300.00584 * 12 10 9 41 41 H 1.09003 * 109.46852 * 305.00197 * 13 10 9 42 42 H 1.09003 * 109.47151 * 65.00083 * 13 10 9 43 43 H 0.97001 * 119.99787 * 0.02562 * 14 13 10 44 44 H 0.97002 * 119.99996 * 180.02562 * 18 17 15 45 45 H 1.08000 * 119.99988 * 359.97438 * 24 23 3 46 46 H 1.08006 * 119.99687 * 180.22930 * 25 24 23 47 47 H 1.08008 * 120.00302 * 179.84249 * 26 25 24 48 48 H 1.08003 * 120.00135 * 179.97438 * 27 26 25 49 49 H 1.08007 * 119.99911 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 1.5655 2.0534 -1.2304 6 8 1.1397 3.1846 -1.1316 7 7 1.6410 1.4650 -2.4406 8 6 2.2667 0.1475 -2.5768 9 6 1.0973 2.1432 -3.6199 10 6 2.1856 3.0094 -4.2571 11 1 3.0238 2.3793 -4.5545 12 8 2.6336 3.9832 -3.3120 13 6 1.6176 3.7182 -5.4884 14 7 2.6886 4.4526 -6.1666 15 6 2.4158 5.1678 -7.3020 16 1 1.4110 5.1909 -7.6972 17 6 3.4306 5.8632 -7.9448 18 7 4.6553 5.8346 -7.4634 19 14 3.0586 6.8383 -9.4941 20 1 2.0454 7.8809 -9.1913 21 1 4.3032 7.4841 -9.9833 22 1 2.5317 5.9247 -10.5395 23 6 1.5656 2.0533 1.2305 24 6 1.7556 3.4199 1.3152 25 6 1.3442 4.1064 2.4423 26 6 0.7502 3.4251 3.4881 27 6 0.5649 2.0577 3.4057 28 6 0.9728 1.3718 2.2770 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 3.9788 2.1804 -0.0002 33 1 3.8574 0.6435 0.8891 34 1 3.8567 0.6439 -0.8909 35 1 3.3457 0.2661 -2.6757 36 1 2.0466 -0.4524 -1.6937 37 1 1.8735 -0.3518 -3.4624 38 1 0.2591 2.7733 -3.3225 39 1 0.7555 1.4005 -4.3408 40 1 1.9384 4.5800 -3.0027 41 1 1.1952 2.9798 -6.1700 42 1 0.8385 4.4150 -5.1793 43 1 3.5911 4.4315 -5.8118 44 1 5.3644 6.3209 -7.9125 45 1 2.2230 3.9516 0.4996 46 1 1.4893 5.1747 2.5068 47 1 0.4311 3.9611 4.3699 48 1 0.1011 1.5254 4.2230 49 1 0.8276 0.3035 2.2124 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700957228.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:52 Heat of formation + Delta-G solvation = -66.010060 kcal Electronic energy + Delta-G solvation = -30536.697788 eV Core-core repulsion = 26465.496075 eV Total energy + Delta-G solvation = -4071.201713 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.31208 -39.07807 -37.82535 -37.11103 -35.22916 -33.95572 -33.07219 -31.29030 -31.01993 -30.12768 -29.14518 -26.97834 -26.68429 -25.77770 -24.17969 -22.96751 -22.70367 -21.50752 -21.04572 -19.44836 -17.93003 -17.20020 -17.11823 -16.64855 -16.07678 -15.86694 -15.82499 -15.25389 -14.91985 -14.85696 -14.54180 -14.36464 -14.28160 -13.68937 -13.56382 -13.43648 -13.09902 -12.94353 -12.83866 -12.68095 -12.49824 -12.42379 -12.31682 -12.07999 -12.00859 -11.83910 -11.44194 -11.25405 -11.11062 -10.91741 -10.78377 -10.62157 -10.49372 -10.16963 -9.75758 -9.62040 -9.35795 -8.93931 -8.90634 -8.86703 -8.44202 -6.89425 -5.72365 -3.01755 1.13625 1.31143 2.41560 2.88128 3.33112 3.45695 3.49622 3.51192 3.65426 4.23591 4.30261 4.59811 4.75206 4.83913 4.87300 4.88740 5.03274 5.05339 5.07610 5.09628 5.16104 5.27341 5.33755 5.35562 5.40692 5.44063 5.51147 5.54598 5.56886 5.67732 5.76398 5.79296 5.80895 5.91074 5.94169 6.02938 6.25835 6.29267 6.32135 6.41541 6.46996 6.55319 6.70481 6.77673 6.85824 7.31686 7.70399 8.07869 8.24635 8.46026 9.57037 10.15313 10.51061 11.50014 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019799 B = 0.002592 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.862267 B =10800.588089 C =11512.448335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.360 6.360 3 C 0.148 3.852 4 C -0.140 4.140 5 C 0.504 3.496 6 O -0.519 6.519 7 N -0.597 5.597 8 C 0.053 3.947 9 C 0.083 3.917 10 C 0.088 3.912 11 H 0.095 0.905 12 O -0.547 6.547 13 C 0.126 3.874 14 N -0.725 5.725 15 C -0.243 4.243 16 H 0.068 0.932 17 C -0.013 4.013 18 N -0.931 5.931 19 Si 0.908 3.092 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.111 4.111 24 C -0.068 4.068 25 C -0.128 4.128 26 C -0.115 4.115 27 C -0.133 4.133 28 C -0.107 4.107 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.103 0.897 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.373 0.627 41 H 0.023 0.977 42 H 0.020 0.980 43 H 0.388 0.612 44 H 0.256 0.744 45 H 0.136 0.864 46 H 0.123 0.877 47 H 0.119 0.881 48 H 0.120 0.880 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.306 -15.177 22.369 28.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.279 6.279 3 C 0.106 3.894 4 C -0.197 4.197 5 C 0.290 3.710 6 O -0.395 6.395 7 N -0.329 5.329 8 C -0.089 4.089 9 C -0.040 4.040 10 C 0.027 3.973 11 H 0.113 0.887 12 O -0.352 6.352 13 C -0.003 4.003 14 N -0.370 5.370 15 C -0.374 4.374 16 H 0.086 0.914 17 C -0.209 4.209 18 N -0.579 5.579 19 Si 0.739 3.261 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.112 4.112 24 C -0.086 4.086 25 C -0.146 4.146 26 C -0.133 4.133 27 C -0.151 4.151 28 C -0.124 4.124 29 H 0.063 0.937 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.121 0.879 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.221 0.779 41 H 0.041 0.959 42 H 0.038 0.962 43 H 0.222 0.778 44 H 0.065 0.935 45 H 0.154 0.846 46 H 0.141 0.859 47 H 0.137 0.863 48 H 0.138 0.862 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.929 -14.979 22.166 27.903 hybrid contribution -0.666 0.972 -0.928 1.500 sum -8.595 -14.007 21.237 26.853 Atomic orbital electron populations 1.23120 0.80631 1.03208 1.01673 1.87898 1.20418 1.25563 1.93972 1.20470 0.96036 0.82616 0.90295 1.21926 0.89516 1.04106 1.04196 1.20792 0.78542 0.86947 0.84750 1.90660 1.45314 1.17853 1.85664 1.47636 1.58825 1.19563 1.06879 1.22410 0.97942 0.83899 1.04656 1.22324 0.97478 0.97295 0.86900 1.22457 0.96549 0.89677 0.88616 0.88703 1.86530 1.39914 1.47311 1.61442 1.21241 0.92563 0.94403 0.92046 1.42240 1.07294 1.58118 1.29310 1.19173 0.94498 1.22585 1.01124 0.91364 1.24758 0.95547 1.01101 0.99528 1.69675 1.00102 1.46701 1.41399 0.86259 0.76792 0.79936 0.83121 1.21276 1.21651 1.21295 1.19845 1.01703 0.94554 0.95109 1.21265 0.97092 0.93176 0.97071 1.21203 0.99486 1.00117 0.93775 1.21193 0.98838 0.94563 0.98665 1.21044 1.01550 0.94583 0.97948 1.21012 0.98222 1.00144 0.93072 0.93706 0.88929 0.92171 0.90031 0.90495 0.90342 0.92567 0.87934 0.91211 0.89813 0.89652 0.77908 0.95905 0.96224 0.77751 0.93459 0.84597 0.85939 0.86283 0.86180 0.85402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.71 101.05 0.98 1.06 16 2 O -0.36 -3.41 6.67 -35.23 -0.24 -3.65 16 3 C 0.15 1.63 0.53 -92.92 -0.05 1.58 16 4 C -0.14 -1.40 8.58 37.15 0.32 -1.08 16 5 C 0.50 6.65 4.69 -10.98 -0.05 6.60 16 6 O -0.52 -8.20 11.66 -8.57 -0.10 -8.30 16 7 N -0.60 -7.25 2.80 -181.58 -0.51 -7.76 16 8 C 0.05 0.50 9.04 59.84 0.54 1.05 16 9 C 0.08 1.10 5.17 -4.04 -0.02 1.08 16 10 C 0.09 1.49 3.27 -26.73 -0.09 1.40 16 11 H 0.10 1.69 8.14 -51.93 -0.42 1.26 16 12 O -0.55 -10.34 11.97 -49.36 -0.59 -10.93 16 13 C 0.13 2.57 5.90 -4.04 -0.02 2.55 16 14 N -0.72 -19.13 5.55 -59.91 -0.33 -19.46 16 15 C -0.24 -7.00 9.99 -15.06 -0.15 -7.15 16 16 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 17 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 18 N -0.93 -29.05 13.06 55.49 0.72 -28.32 16 19 Si 0.91 22.87 29.55 -169.99 -5.02 17.85 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 C -0.11 -1.27 4.23 -104.62 -0.44 -1.71 16 24 C -0.07 -0.84 8.11 -39.58 -0.32 -1.16 16 25 C -0.13 -1.38 10.05 -39.59 -0.40 -1.77 16 26 C -0.11 -1.07 10.05 -39.59 -0.40 -1.47 16 27 C -0.13 -1.20 10.05 -39.58 -0.40 -1.60 16 28 C -0.11 -1.05 7.46 -39.58 -0.30 -1.34 16 29 H 0.04 0.43 7.13 -51.93 -0.37 0.06 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.52 5.04 -51.92 -0.26 0.25 16 32 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.73 5.54 -51.93 -0.29 0.44 16 35 H 0.06 0.54 7.02 -51.93 -0.36 0.17 16 36 H 0.10 0.89 4.72 -51.93 -0.25 0.64 16 37 H 0.07 0.56 7.83 -51.93 -0.41 0.16 16 38 H 0.08 1.16 7.51 -51.93 -0.39 0.77 16 39 H 0.09 0.95 7.86 -51.93 -0.41 0.54 16 40 H 0.37 6.70 8.30 45.56 0.38 7.08 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.39 11.02 7.67 -40.82 -0.31 10.71 16 44 H 0.26 7.69 8.31 -40.82 -0.34 7.36 16 45 H 0.14 1.88 6.56 -52.49 -0.34 1.53 16 46 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 47 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 48 H 0.12 0.80 8.06 -52.48 -0.42 0.37 16 49 H 0.13 1.08 6.08 -52.48 -0.32 0.76 16 LS Contribution 385.25 15.07 5.81 5.81 Total: -1.00 -34.08 385.25 -7.83 -41.91 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -6.68 Total: 15.31 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -0.89 Total: -2.45 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: -0.12 Total: -55.54 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.93 Total: -22.88 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.08 -7.83 -41.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700957228.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.104 kcal (2) G-P(sol) polarization free energy of solvation -34.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds