Wall clock time and date at job start Sat Apr 11 2020 04:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99616 * 2 1 4 4 C 1.52996 * 109.47289 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.47102 * 300.00151 * 3 2 1 6 6 O 1.21282 * 120.00181 * 141.07562 * 5 3 2 7 7 N 1.34770 * 120.00048 * 321.34651 * 5 3 2 8 8 C 1.46502 * 120.00056 * 359.72599 * 7 5 3 9 9 C 1.46496 * 120.00202 * 179.72699 * 7 5 3 10 10 C 1.53005 * 109.47032 * 90.00206 * 9 7 5 11 11 H 1.08996 * 109.46810 * 304.99353 * 10 9 7 12 12 O 1.42896 * 109.47541 * 65.00148 * 10 9 7 13 13 C 1.53002 * 109.46760 * 185.00217 * 10 9 7 14 14 N 1.46500 * 109.46846 * 179.97438 * 13 10 9 15 15 C 1.36938 * 120.00291 * 179.97438 * 14 13 10 16 16 H 1.08008 * 119.99577 * 0.02562 * 15 14 13 17 17 C 1.38811 * 120.00752 * 180.02562 * 15 14 13 18 18 N 1.31615 * 120.00609 * 180.02562 * 17 15 14 19 19 Si 1.86806 * 119.99552 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.46848 * 89.99886 * 19 17 15 21 21 H 1.48495 * 109.47091 * 210.00224 * 19 17 15 22 22 H 1.48501 * 109.46976 * 329.99894 * 19 17 15 23 23 C 1.50703 * 109.47016 * 59.99974 * 3 2 1 24 24 C 1.38236 * 120.00263 * 95.40980 * 23 3 2 25 25 C 1.38235 * 120.00079 * 179.81191 * 24 23 3 26 26 C 1.38229 * 119.99854 * 0.38938 * 25 24 23 27 27 C 1.38230 * 120.00460 * 359.86601 * 26 25 24 28 28 C 1.38235 * 119.99731 * 359.94968 * 27 26 25 29 29 H 1.09002 * 109.47691 * 299.99610 * 1 2 3 30 30 H 1.09000 * 109.47334 * 60.00283 * 1 2 3 31 31 H 1.09005 * 109.46954 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47264 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.47064 * 300.00292 * 4 3 2 34 34 H 1.09005 * 109.47087 * 60.00107 * 4 3 2 35 35 H 1.08996 * 109.47444 * 89.99823 * 8 7 5 36 36 H 1.09000 * 109.47454 * 210.00175 * 8 7 5 37 37 H 1.09005 * 109.47236 * 330.00299 * 8 7 5 38 38 H 1.08998 * 109.47455 * 209.99612 * 9 7 5 39 39 H 1.09002 * 109.47410 * 329.99922 * 9 7 5 40 40 H 0.96699 * 114.00073 * 59.99306 * 12 10 9 41 41 H 1.08995 * 109.47265 * 299.99297 * 13 10 9 42 42 H 1.08997 * 109.47569 * 59.99808 * 13 10 9 43 43 H 0.97000 * 120.00258 * 0.02562 * 14 13 10 44 44 H 0.96994 * 120.00045 * 179.97438 * 18 17 15 45 45 H 1.08004 * 119.99490 * 359.97438 * 24 23 3 46 46 H 1.08001 * 119.99470 * 180.22474 * 25 24 23 47 47 H 1.08005 * 119.99400 * 179.83445 * 26 25 24 48 48 H 1.08000 * 120.00474 * 179.97438 * 27 26 25 49 49 H 1.08000 * 120.00003 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1849 0.0006 5 6 1.5654 2.0534 -1.2305 6 8 1.3020 3.2351 -1.1598 7 7 1.4550 1.4077 -2.4083 8 6 1.7732 -0.0198 -2.4938 9 6 1.0169 2.1333 -3.6031 10 6 2.2363 2.7100 -4.3253 11 1 2.8131 3.3223 -3.6322 12 8 3.0523 1.6417 -4.8099 13 6 1.7722 3.5712 -5.5017 14 7 2.9397 4.1238 -6.1929 15 6 2.7698 4.9315 -7.2855 16 1 1.7749 5.1615 -7.6375 17 6 3.8760 5.4548 -7.9408 18 7 3.7126 6.2315 -8.9907 19 14 5.5967 5.0564 -7.3324 20 1 6.0883 3.8284 -8.0072 21 1 6.5057 6.1891 -7.6419 22 1 5.5638 4.8352 -5.8643 23 6 1.5654 2.0534 1.2305 24 6 2.3648 2.0662 2.3582 25 6 1.9586 2.7554 3.4856 26 6 0.7493 3.4250 3.4879 27 6 -0.0525 3.4079 2.3621 28 6 0.3554 2.7218 1.2334 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.9786 2.1806 0.0011 33 1 3.8566 0.6441 0.8908 34 1 3.8574 0.6438 -0.8892 35 1 0.8748 -0.6047 -2.2968 36 1 2.1450 -0.2500 -3.4922 37 1 2.5365 -0.2667 -1.7558 38 1 0.4892 1.4510 -4.2695 39 1 0.3501 2.9447 -3.3114 40 1 2.6027 1.0548 -5.4331 41 1 1.1954 2.9590 -6.1949 42 1 1.1498 4.3861 -5.1322 43 1 3.8332 3.9170 -5.8770 44 1 4.4856 6.5974 -9.4482 45 1 3.3079 1.5399 2.3575 46 1 2.5849 2.7683 4.3653 47 1 0.4308 3.9612 4.3697 48 1 -0.9975 3.9307 2.3641 49 1 -0.2709 2.7088 0.3537 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700957231.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:55 Heat of formation + Delta-G solvation = -65.933069 kcal Electronic energy + Delta-G solvation = -30501.226059 eV Core-core repulsion = 26430.027685 eV Total energy + Delta-G solvation = -4071.198374 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.41908 -39.17205 -37.90942 -37.41859 -35.26027 -34.14424 -33.30281 -31.51300 -31.20132 -30.21958 -29.52665 -27.03146 -26.64609 -26.15152 -24.46416 -22.85100 -22.50626 -21.34440 -21.25476 -19.54756 -18.01625 -17.70097 -17.40430 -16.66126 -16.49588 -15.85575 -15.78526 -15.51537 -15.10381 -14.84986 -14.69761 -14.47953 -14.31369 -13.89818 -13.69901 -13.39336 -13.20922 -13.10007 -12.94630 -12.70059 -12.58404 -12.54654 -12.34700 -12.25437 -12.11555 -11.88795 -11.61907 -11.33883 -11.25590 -11.21986 -10.87051 -10.81402 -10.51502 -10.21768 -9.96291 -9.57960 -9.42732 -9.11677 -9.06090 -8.89841 -8.59437 -7.21866 -5.75160 -3.10551 1.01973 1.19088 2.33605 2.76052 3.26449 3.42773 3.48792 3.49221 3.63790 4.09660 4.21912 4.56187 4.58813 4.63208 4.75850 4.79276 4.86328 4.89223 4.99711 5.01978 5.05708 5.13146 5.18974 5.26404 5.35900 5.36905 5.38903 5.42368 5.50871 5.54096 5.67967 5.69361 5.70445 5.78896 5.84099 5.86481 5.88779 6.19228 6.26679 6.29047 6.31595 6.46259 6.58667 6.63215 6.72990 7.19027 7.85779 7.96095 8.01499 8.43806 9.23753 9.96129 10.16527 11.43065 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016766 B = 0.002792 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.601938 B =10027.114230 C =10477.168604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.359 6.359 3 C 0.147 3.853 4 C -0.142 4.142 5 C 0.492 3.508 6 O -0.522 6.522 7 N -0.597 5.597 8 C 0.080 3.920 9 C 0.084 3.916 10 C 0.083 3.917 11 H 0.099 0.901 12 O -0.554 6.554 13 C 0.131 3.869 14 N -0.749 5.749 15 C -0.246 4.246 16 H 0.089 0.911 17 C 0.005 3.995 18 N -0.934 5.934 19 Si 0.887 3.113 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.277 1.277 23 C -0.106 4.106 24 C -0.097 4.097 25 C -0.128 4.128 26 C -0.111 4.111 27 C -0.126 4.126 28 C -0.078 4.078 29 H 0.051 0.949 30 H 0.045 0.955 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.369 0.631 41 H 0.029 0.971 42 H 0.035 0.965 43 H 0.366 0.634 44 H 0.260 0.740 45 H 0.127 0.873 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.123 0.877 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.490 -16.648 25.824 31.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.278 6.278 3 C 0.105 3.895 4 C -0.199 4.199 5 C 0.278 3.722 6 O -0.398 6.398 7 N -0.329 5.329 8 C -0.062 4.062 9 C -0.039 4.039 10 C 0.023 3.977 11 H 0.117 0.883 12 O -0.359 6.359 13 C 0.003 3.997 14 N -0.395 5.395 15 C -0.376 4.376 16 H 0.107 0.893 17 C -0.191 4.191 18 N -0.582 5.582 19 Si 0.717 3.283 20 H -0.210 1.210 21 H -0.218 1.218 22 H -0.203 1.203 23 C -0.107 4.107 24 C -0.115 4.115 25 C -0.146 4.146 26 C -0.129 4.129 27 C -0.144 4.144 28 C -0.096 4.096 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.112 0.888 40 H 0.216 0.784 41 H 0.046 0.954 42 H 0.053 0.947 43 H 0.200 0.800 44 H 0.070 0.930 45 H 0.145 0.855 46 H 0.141 0.859 47 H 0.139 0.861 48 H 0.141 0.859 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.197 -15.778 26.051 31.295 hybrid contribution 0.554 -0.143 -0.165 0.596 sum -6.643 -15.921 25.885 31.107 Atomic orbital electron populations 1.22989 0.80910 1.03209 1.00882 1.88071 1.20186 1.25009 1.94523 1.20458 0.96081 0.83046 0.89924 1.21940 0.89790 1.03998 1.04207 1.21055 0.78176 0.87920 0.85045 1.90761 1.48566 1.15278 1.85223 1.47754 1.66199 1.10842 1.08151 1.22080 1.01275 0.79474 1.03420 1.22243 0.97547 0.97746 0.86360 1.22584 0.91603 0.88123 0.95385 0.88280 1.86585 1.42409 1.42117 1.64758 1.21187 0.91257 0.95369 0.91926 1.42572 1.02811 1.59469 1.34676 1.19049 0.94997 1.20942 1.02572 0.89319 1.24661 0.97459 0.99438 0.97525 1.69704 1.29467 1.37232 1.21834 0.86499 0.85728 0.77530 0.78517 1.21015 1.21782 1.20277 1.19774 0.95962 1.00113 0.94850 1.21071 0.99377 0.98617 0.92412 1.21113 0.96844 0.98378 0.98268 1.21204 0.94654 0.98853 0.98239 1.21140 1.00238 0.99768 0.93289 1.21118 0.95588 0.95201 0.97727 0.93079 0.93600 0.88948 0.89980 0.90052 0.90400 0.92816 0.90982 0.89684 0.89848 0.88803 0.78385 0.95369 0.94721 0.80042 0.93050 0.85477 0.85878 0.86053 0.85945 0.86094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 8.65 101.05 0.87 1.01 16 2 O -0.36 -3.39 7.62 -35.23 -0.27 -3.66 16 3 C 0.15 1.59 0.62 -92.92 -0.06 1.53 16 4 C -0.14 -1.35 7.74 37.16 0.29 -1.06 16 5 C 0.49 6.46 4.75 -10.99 -0.05 6.40 16 6 O -0.52 -8.66 13.99 5.56 0.08 -8.58 16 7 N -0.60 -6.90 2.44 -181.57 -0.44 -7.34 16 8 C 0.08 0.71 8.55 59.85 0.51 1.23 16 9 C 0.08 1.04 5.06 -4.04 -0.02 1.02 16 10 C 0.08 1.32 3.30 -26.73 -0.09 1.23 16 11 H 0.10 1.84 8.14 -51.93 -0.42 1.41 16 12 O -0.55 -8.39 11.91 -35.23 -0.42 -8.81 16 13 C 0.13 2.54 5.92 -4.04 -0.02 2.51 16 14 N -0.75 -18.56 5.30 -59.91 -0.32 -18.88 16 15 C -0.25 -7.18 10.47 -15.06 -0.16 -7.34 16 16 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 17 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 18 N -0.93 -30.01 13.97 55.49 0.78 -29.23 16 19 Si 0.89 23.13 27.74 -169.99 -4.71 18.42 16 20 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 21 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 22 H -0.28 -6.98 6.52 56.52 0.37 -6.61 16 23 C -0.11 -1.18 4.25 -104.62 -0.45 -1.63 16 24 C -0.10 -0.93 9.13 -39.58 -0.36 -1.29 16 25 C -0.13 -1.12 10.05 -39.59 -0.40 -1.52 16 26 C -0.11 -0.99 10.05 -39.59 -0.40 -1.38 16 27 C -0.13 -1.25 10.05 -39.59 -0.40 -1.65 16 28 C -0.08 -0.89 6.31 -39.58 -0.25 -1.14 16 29 H 0.05 0.43 5.94 -51.93 -0.31 0.12 16 30 H 0.05 0.40 6.33 -51.93 -0.33 0.07 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.60 6.57 -51.93 -0.34 0.26 16 34 H 0.08 0.72 6.46 -51.93 -0.34 0.38 16 35 H 0.05 0.41 6.73 -51.93 -0.35 0.06 16 36 H 0.07 0.61 7.11 -51.93 -0.37 0.24 16 37 H 0.08 0.76 4.30 -51.93 -0.22 0.53 16 38 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 39 H 0.09 1.26 7.42 -51.93 -0.39 0.88 16 40 H 0.37 4.33 9.04 45.56 0.41 4.74 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.37 9.15 5.41 -40.82 -0.22 8.93 16 44 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 45 H 0.13 0.98 6.04 -52.48 -0.32 0.66 16 46 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 47 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 48 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 49 H 0.12 1.46 6.38 -52.49 -0.33 1.13 16 LS Contribution 381.14 15.07 5.74 5.74 Total: -1.00 -36.06 381.14 -7.13 -43.19 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -6.49 Total: 11.18 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -1.07 Total: -2.03 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: 0.01 Total: -55.45 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.61 Total: -21.05 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -4.71 Total: 18.42 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.06 -7.13 -43.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700957231.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.744 kcal (2) G-P(sol) polarization free energy of solvation -36.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds