Wall clock time and date at job start Sat Apr 11 2020 04:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42896 * 114.00148 * 2 1 4 4 C 1.53005 * 109.47398 * 179.97438 * 3 2 1 5 5 C 1.50696 * 109.47691 * 59.99111 * 3 2 1 6 6 O 1.21281 * 120.00324 * 228.87332 * 5 3 2 7 7 N 1.34776 * 119.99625 * 48.86826 * 5 3 2 8 8 C 1.46495 * 120.00036 * 4.96884 * 7 5 3 9 9 C 1.46501 * 119.99999 * 184.96335 * 7 5 3 10 10 C 1.53001 * 109.47158 * 90.00343 * 9 7 5 11 11 H 1.09004 * 109.47113 * 59.99446 * 10 9 7 12 12 O 1.42907 * 109.46895 * 300.00189 * 10 9 7 13 13 C 1.52992 * 109.47285 * 180.02562 * 10 9 7 14 14 N 1.46499 * 109.47369 * 184.99876 * 13 10 9 15 15 C 1.36941 * 120.00428 * 180.02562 * 14 13 10 16 16 H 1.07994 * 119.99960 * 359.97438 * 15 14 13 17 17 C 1.38808 * 120.00239 * 180.02562 * 15 14 13 18 18 N 1.31631 * 119.99879 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00392 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46696 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47037 * 119.99657 * 19 17 15 22 22 H 1.48498 * 109.47299 * 239.99930 * 19 17 15 23 23 C 1.50706 * 109.46744 * 299.99193 * 3 2 1 24 24 C 1.38231 * 119.99875 * 346.37466 * 23 3 2 25 25 C 1.38238 * 120.00105 * 179.76462 * 24 23 3 26 26 C 1.38242 * 119.99713 * 0.50276 * 25 24 23 27 27 C 1.38232 * 119.99730 * 359.74998 * 26 25 24 28 28 C 1.38233 * 120.00128 * 166.64039 * 23 3 2 29 29 H 1.09006 * 109.47012 * 60.00963 * 1 2 3 30 30 H 1.08999 * 109.47372 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47647 * 300.01083 * 1 2 3 32 32 H 1.08999 * 109.46697 * 59.99177 * 4 3 2 33 33 H 1.08993 * 109.47182 * 179.97438 * 4 3 2 34 34 H 1.08996 * 109.46575 * 299.99451 * 4 3 2 35 35 H 1.09002 * 109.47681 * 84.57073 * 8 7 5 36 36 H 1.08999 * 109.47115 * 204.57127 * 8 7 5 37 37 H 1.08999 * 109.47229 * 324.57101 * 8 7 5 38 38 H 1.09001 * 109.47465 * 210.00324 * 9 7 5 39 39 H 1.09006 * 109.46939 * 330.00489 * 9 7 5 40 40 H 0.96699 * 113.99844 * 299.99707 * 12 10 9 41 41 H 1.08995 * 109.47443 * 304.99961 * 13 10 9 42 42 H 1.09000 * 109.47675 * 64.99929 * 13 10 9 43 43 H 0.97008 * 119.99743 * 359.97438 * 14 13 10 44 44 H 0.96999 * 119.99889 * 180.02562 * 18 17 15 45 45 H 1.07998 * 120.00273 * 359.97438 * 24 23 3 46 46 H 1.07998 * 120.00294 * 180.22722 * 25 24 23 47 47 H 1.07998 * 120.00137 * 179.72209 * 26 25 24 48 48 H 1.08005 * 120.00081 * 179.97438 * 27 26 25 49 49 H 1.08001 * 119.99763 * 0.02562 * 28 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 1.5655 2.0535 1.2303 6 8 1.1308 3.1813 1.1303 7 7 1.6507 1.4691 2.4418 8 6 2.2754 0.1509 2.5768 9 6 1.1187 2.1521 3.6236 10 6 -0.3471 1.7612 3.8219 11 1 -0.4198 0.6827 3.9621 12 8 -1.1021 2.1438 2.6704 13 6 -0.9029 2.4750 5.0557 14 7 -2.2678 2.0104 5.3153 15 6 -2.9722 2.5135 6.3765 16 1 -2.5214 3.2524 7.0222 17 6 -4.2652 2.0729 6.6227 18 7 -4.8145 1.1718 5.8359 19 14 -5.2259 2.7585 8.0706 20 1 -4.3899 3.7497 8.7944 21 1 -6.4612 3.4185 7.5770 22 1 -5.5900 1.6521 8.9917 23 6 1.5656 2.0532 -1.2306 24 6 0.9616 1.3735 -2.2718 25 6 0.5494 2.0601 -3.3986 26 6 0.7507 3.4248 -3.4885 27 6 1.3594 4.1036 -2.4496 28 6 1.7668 3.4178 -1.3206 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8898 32 1 3.8574 0.6434 -0.8890 33 1 3.9788 2.1803 0.0002 34 1 3.8566 0.6440 0.8909 35 1 3.3554 0.2679 2.6658 36 1 1.8891 -0.3447 3.4675 37 1 2.0464 -0.4515 1.6977 38 1 1.6946 1.8603 4.5019 39 1 1.1914 3.2307 3.4833 40 1 -1.0824 3.0925 2.4846 41 1 -0.2737 2.2537 5.9178 42 1 -0.9126 3.5507 4.8797 43 1 -2.6729 1.3469 4.7351 44 1 -5.7183 0.8641 6.0078 45 1 0.8087 0.3066 -2.2036 46 1 0.0742 1.5296 -4.2105 47 1 0.4327 3.9605 -4.3707 48 1 1.5170 5.1698 -2.5200 49 1 2.2430 3.9481 -0.5091 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700957236.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:02 Heat of formation + Delta-G solvation = -66.614948 kcal Electronic energy + Delta-G solvation = -30784.328178 eV Core-core repulsion = 26713.100236 eV Total energy + Delta-G solvation = -4071.227943 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.26504 -39.05311 -37.71028 -37.16152 -35.22955 -33.99174 -33.02675 -31.31361 -30.97967 -30.11183 -29.14535 -26.97997 -26.43920 -25.79542 -24.18436 -22.95185 -22.67519 -21.50952 -21.01506 -19.42868 -17.80901 -17.17546 -17.14556 -16.54350 -16.15916 -15.87813 -15.56840 -15.50871 -15.03282 -14.56929 -14.46311 -14.36072 -14.16628 -13.82350 -13.54543 -13.36665 -13.07645 -12.92155 -12.81044 -12.71539 -12.55783 -12.36829 -12.28216 -12.12673 -11.91717 -11.70863 -11.50536 -11.17439 -11.04224 -10.93148 -10.82647 -10.66237 -10.34034 -10.12048 -9.79747 -9.70268 -9.26250 -8.89766 -8.89062 -8.84682 -8.46187 -6.90773 -5.74136 -3.03412 1.18612 1.35330 2.45065 2.87351 3.44050 3.46586 3.49215 3.51821 3.69326 4.24058 4.33383 4.58494 4.77540 4.84638 4.89075 4.93143 5.03756 5.06618 5.13904 5.22666 5.27668 5.30359 5.35623 5.42788 5.45625 5.50544 5.52203 5.56004 5.67758 5.74758 5.78553 5.81136 5.84024 5.90129 5.96692 6.02541 6.24673 6.34460 6.37955 6.43157 6.46989 6.53705 6.74750 6.82518 6.89202 7.32383 7.70256 8.08690 8.15990 8.44126 9.55519 10.13430 10.49076 11.48328 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016784 B = 0.002794 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.841901 B =10018.374510 C =10575.078809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 O -0.361 6.361 3 C 0.147 3.853 4 C -0.141 4.141 5 C 0.505 3.495 6 O -0.524 6.524 7 N -0.597 5.597 8 C 0.053 3.947 9 C 0.081 3.919 10 C 0.088 3.912 11 H 0.095 0.905 12 O -0.549 6.549 13 C 0.127 3.873 14 N -0.725 5.725 15 C -0.241 4.241 16 H 0.070 0.930 17 C -0.014 4.014 18 N -0.930 5.930 19 Si 0.907 3.093 20 H -0.281 1.281 21 H -0.291 1.291 22 H -0.291 1.291 23 C -0.109 4.109 24 C -0.103 4.103 25 C -0.131 4.131 26 C -0.114 4.114 27 C -0.129 4.129 28 C -0.070 4.070 29 H 0.058 0.942 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.373 0.627 41 H 0.024 0.976 42 H 0.021 0.979 43 H 0.388 0.612 44 H 0.254 0.746 45 H 0.130 0.870 46 H 0.121 0.879 47 H 0.119 0.881 48 H 0.121 0.879 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.904 -1.352 -17.416 26.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 O -0.280 6.280 3 C 0.105 3.895 4 C -0.198 4.198 5 C 0.292 3.708 6 O -0.400 6.400 7 N -0.329 5.329 8 C -0.089 4.089 9 C -0.042 4.042 10 C 0.027 3.973 11 H 0.113 0.887 12 O -0.354 6.354 13 C -0.002 4.002 14 N -0.370 5.370 15 C -0.372 4.372 16 H 0.088 0.912 17 C -0.210 4.210 18 N -0.578 5.578 19 Si 0.738 3.262 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.219 1.219 23 C -0.109 4.109 24 C -0.121 4.121 25 C -0.149 4.149 26 C -0.132 4.132 27 C -0.147 4.147 28 C -0.088 4.088 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.122 0.878 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.221 0.779 41 H 0.042 0.958 42 H 0.038 0.962 43 H 0.222 0.778 44 H 0.064 0.936 45 H 0.148 0.852 46 H 0.139 0.861 47 H 0.137 0.863 48 H 0.139 0.861 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 19.626 -1.476 -17.321 26.218 hybrid contribution -0.914 0.859 0.875 1.529 sum 18.712 -0.617 -16.446 24.920 Atomic orbital electron populations 1.23278 0.79562 1.03533 1.02976 1.87861 1.21256 1.24885 1.94006 1.20413 0.95636 0.83232 0.90261 1.21929 0.90027 1.03518 1.04317 1.20836 0.78291 0.86911 0.84810 1.90669 1.45101 1.18702 1.85536 1.47627 1.58569 1.19763 1.06948 1.22393 0.96927 0.84294 1.05296 1.22311 0.95723 0.98908 0.87278 1.22478 0.88226 1.00154 0.86454 0.88670 1.86511 1.73199 1.29421 1.46252 1.21223 0.88770 0.96224 0.93977 1.42253 1.10484 1.50354 1.33883 1.19263 0.95605 1.18420 1.03956 0.91248 1.24761 0.97353 0.99556 0.99304 1.69696 1.15078 1.33581 1.39463 0.86115 0.80025 0.78053 0.81977 1.20583 1.21832 1.21860 1.19829 1.01562 0.94501 0.95039 1.21054 0.97690 1.00371 0.93018 1.21070 1.01186 0.94609 0.98039 1.21181 0.98724 0.94599 0.98732 1.21148 0.99759 0.99901 0.93911 1.21114 0.97805 0.93129 0.96795 0.92394 0.89059 0.91482 0.90374 0.90567 0.90458 0.92924 0.91031 0.87774 0.89622 0.89464 0.77919 0.95829 0.96169 0.77775 0.93573 0.85244 0.86098 0.86284 0.86111 0.85235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 9.70 101.05 0.98 1.00 16 2 O -0.36 -3.98 6.69 -35.23 -0.24 -4.22 16 3 C 0.15 1.65 0.53 -92.92 -0.05 1.60 16 4 C -0.14 -1.20 8.57 37.16 0.32 -0.88 16 5 C 0.51 6.68 4.53 -10.99 -0.05 6.63 16 6 O -0.52 -8.27 12.35 3.64 0.05 -8.22 16 7 N -0.60 -7.21 2.81 -181.57 -0.51 -7.72 16 8 C 0.05 0.50 8.99 59.84 0.54 1.04 16 9 C 0.08 1.06 5.15 -4.04 -0.02 1.04 16 10 C 0.09 1.45 3.27 -26.73 -0.09 1.36 16 11 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 12 O -0.55 -10.10 11.39 -37.14 -0.42 -10.52 16 13 C 0.13 2.55 5.90 -4.05 -0.02 2.53 16 14 N -0.73 -18.92 5.55 -59.92 -0.33 -19.26 16 15 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 16 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 17 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 18 N -0.93 -28.86 13.06 55.49 0.72 -28.13 16 19 Si 0.91 22.80 29.55 -169.99 -5.02 17.77 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 C -0.11 -1.29 4.23 -104.62 -0.44 -1.73 16 24 C -0.10 -1.14 7.46 -39.58 -0.30 -1.43 16 25 C -0.13 -1.32 10.05 -39.58 -0.40 -1.71 16 26 C -0.11 -1.14 10.05 -39.58 -0.40 -1.54 16 27 C -0.13 -1.39 10.05 -39.59 -0.40 -1.79 16 28 C -0.07 -0.85 8.08 -39.58 -0.32 -1.17 16 29 H 0.06 0.69 4.99 -51.93 -0.26 0.43 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.99 6.31 -51.93 -0.33 0.66 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.62 8.06 -51.93 -0.42 0.20 16 34 H 0.08 0.57 5.50 -51.93 -0.29 0.29 16 35 H 0.05 0.39 6.98 -51.93 -0.36 0.03 16 36 H 0.07 0.65 8.03 -51.93 -0.42 0.23 16 37 H 0.10 1.00 4.74 -51.93 -0.25 0.76 16 38 H 0.09 0.95 8.07 -51.93 -0.42 0.53 16 39 H 0.09 1.21 7.36 -51.93 -0.38 0.83 16 40 H 0.37 6.61 8.62 45.56 0.39 7.00 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.39 10.89 7.67 -40.82 -0.31 10.58 16 44 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 45 H 0.13 1.30 6.03 -52.49 -0.32 0.98 16 46 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 47 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 48 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 49 H 0.13 1.62 6.63 -52.49 -0.35 1.27 16 LS Contribution 384.79 15.07 5.80 5.80 Total: -1.00 -33.74 384.79 -7.48 -41.22 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: -6.63 Total: 15.90 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -0.89 Total: -2.62 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: -0.12 Total: -55.11 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.61 Total: -22.96 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.74 -7.48 -41.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700957236.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.399 kcal (2) G-P(sol) polarization free energy of solvation -33.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds