Wall clock time and date at job start Sat Apr 11 2020 04:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47554 * 2 1 4 4 C 1.53006 * 109.47442 * 120.00693 * 2 1 3 5 5 C 1.50696 * 109.47379 * 174.99915 * 4 2 1 6 6 O 1.21275 * 120.00180 * 0.27027 * 5 4 2 7 7 N 1.34777 * 119.99905 * 179.97438 * 5 4 2 8 8 C 1.46928 * 120.62928 * 359.71433 * 7 5 4 9 9 C 1.52765 * 109.01034 * 233.58384 * 8 7 5 10 10 C 1.53036 * 109.38413 * 305.59337 * 9 8 7 11 11 H 1.09005 * 109.45993 * 301.22253 * 10 9 8 12 12 C 1.52996 * 109.45231 * 181.25171 * 10 9 8 13 13 F 1.39899 * 109.46891 * 306.47684 * 12 10 9 14 14 F 1.39906 * 109.46796 * 66.47211 * 12 10 9 15 15 F 1.39898 * 109.47343 * 186.47682 * 12 10 9 16 16 C 1.53048 * 109.53956 * 61.23537 * 10 9 8 17 17 H 1.08997 * 109.52185 * 178.66631 * 16 10 9 18 18 C 1.52998 * 109.49576 * 58.58996 * 16 10 9 19 19 N 1.46495 * 109.46962 * 179.20784 * 18 16 10 20 20 C 1.36942 * 119.99883 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99884 * 359.97438 * 20 19 18 22 22 C 1.38814 * 119.99657 * 179.97438 * 20 19 18 23 23 N 1.31614 * 120.00230 * 359.97438 * 22 20 19 24 24 Si 1.86810 * 119.99576 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46952 * 90.00160 * 24 22 20 26 26 H 1.48498 * 109.46861 * 209.99989 * 24 22 20 27 27 H 1.48501 * 109.46862 * 330.00239 * 24 22 20 28 28 C 1.46927 * 120.62987 * 179.97438 * 7 5 4 29 29 H 1.08996 * 109.46644 * 299.99732 * 1 2 3 30 30 H 1.08994 * 109.46975 * 59.99715 * 1 2 3 31 31 H 1.08993 * 109.47161 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47301 * 240.00124 * 2 1 3 33 33 H 1.09010 * 109.46899 * 60.00385 * 3 2 1 34 34 H 1.09005 * 109.47371 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.47705 * 300.00330 * 3 2 1 36 36 H 1.08997 * 109.46942 * 54.98880 * 4 2 1 37 37 H 1.09008 * 109.46568 * 294.99760 * 4 2 1 38 38 H 1.08995 * 109.58632 * 353.42273 * 8 7 5 39 39 H 1.09006 * 109.58525 * 113.84455 * 8 7 5 40 40 H 1.08993 * 109.56582 * 185.55215 * 9 8 7 41 41 H 1.09002 * 109.38278 * 65.51567 * 9 8 7 42 42 H 1.09004 * 109.46774 * 299.20151 * 18 16 10 43 43 H 1.09000 * 109.47438 * 59.20171 * 18 16 10 44 44 H 0.97001 * 120.00493 * 359.97438 * 19 18 16 45 45 H 0.97001 * 119.99836 * 179.97438 * 23 22 20 46 46 H 1.09005 * 109.58591 * 246.15317 * 28 7 5 47 47 H 1.08997 * 109.58501 * 6.43585 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 3.5420 -0.8296 1.1888 6 8 4.1455 -0.3701 0.2425 7 7 4.2150 -1.4316 2.1893 8 6 3.4989 -1.9817 3.3484 9 6 4.1019 -1.4022 4.6268 10 6 5.6104 -1.6600 4.6391 11 1 5.7960 -2.7325 4.5812 12 6 6.2111 -1.1078 5.9333 13 9 5.8468 0.2349 6.0807 14 9 5.7303 -1.8437 7.0217 15 9 7.6054 -1.2096 5.8808 16 6 6.2582 -0.9651 3.4391 17 1 7.3356 -1.1291 3.4612 18 6 5.9689 0.5360 3.5009 19 7 6.6051 1.2031 2.3624 20 6 6.4820 2.5581 2.2066 21 1 5.9156 3.1348 2.9228 22 6 7.0854 3.1903 1.1280 23 7 7.7761 2.4876 0.2555 24 14 6.9169 5.0385 0.9151 25 1 8.0311 5.7216 1.6203 26 1 6.9645 5.3766 -0.5301 27 1 5.6212 5.4864 1.4860 28 6 5.6792 -1.5452 2.1444 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6768 1.9563 0.8901 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9564 -0.8899 36 1 1.6053 -1.7199 1.2951 37 1 1.7517 -0.1585 2.1370 38 1 2.4446 -1.7118 3.2883 39 1 3.6003 -3.0669 3.3592 40 1 3.6445 -1.8777 5.4943 41 1 3.9161 -0.3286 4.6601 42 1 4.8919 0.7002 3.4628 43 1 6.3661 0.9447 4.4300 44 1 7.1136 0.6852 1.7188 45 1 8.1974 2.9293 -0.4984 46 1 5.9617 -2.5942 2.0552 47 1 6.0627 -0.9894 1.2888 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707191621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:07 Heat of formation + Delta-G solvation = -185.281913 kcal Electronic energy + Delta-G solvation = -32264.904204 eV Core-core repulsion = 27646.673735 eV Total energy + Delta-G solvation = -4618.230469 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.04646 -47.53632 -47.44869 -40.29378 -38.07889 -35.32909 -34.63348 -33.33770 -31.76351 -30.01946 -28.52757 -27.05820 -26.83751 -25.31900 -23.58301 -23.26581 -21.99405 -20.84567 -19.51726 -18.71764 -18.27205 -18.12165 -17.59673 -16.82614 -16.57077 -15.80797 -15.38011 -15.11056 -14.71476 -14.49614 -14.26485 -14.11346 -14.02478 -13.87245 -13.69691 -13.63231 -13.60441 -13.45099 -13.12819 -12.99489 -12.78769 -12.49932 -12.34967 -12.11687 -12.04138 -11.79188 -11.67884 -11.26994 -10.97114 -10.86989 -10.76913 -10.68980 -10.61434 -10.56229 -10.48622 -10.38531 -9.94193 -9.57183 -9.24325 -8.72959 -8.39736 -6.76810 -5.63330 -2.90612 2.81651 3.01177 3.21825 3.51083 3.55694 3.57678 3.84567 3.99051 4.09518 4.58889 4.63967 4.68835 4.83495 4.87515 4.94090 5.02006 5.05805 5.17142 5.27040 5.34882 5.38697 5.51671 5.56801 5.59964 5.62278 5.70103 5.72939 5.82458 5.87528 5.90797 6.05471 6.09944 6.15221 6.17462 6.32990 6.52245 6.53185 6.67531 6.78602 6.85015 6.93503 7.66328 7.80442 8.54372 8.59887 9.65939 10.22914 10.57145 11.59547 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.007592 B = 0.006143 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3687.442718 B = 4557.136828 C = 7286.825081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 C -0.156 4.156 4 C -0.134 4.134 5 C 0.511 3.489 6 O -0.504 6.504 7 N -0.614 5.614 8 C 0.116 3.884 9 C -0.140 4.140 10 C -0.122 4.122 11 H 0.112 0.888 12 C 0.454 3.546 13 F -0.171 7.171 14 F -0.191 7.191 15 F -0.181 7.181 16 C -0.113 4.113 17 H 0.094 0.906 18 C 0.146 3.854 19 N -0.723 5.723 20 C -0.233 4.233 21 H 0.066 0.934 22 C -0.010 4.010 23 N -0.929 5.929 24 Si 0.902 3.098 25 H -0.292 1.292 26 H -0.292 1.292 27 H -0.283 1.283 28 C 0.125 3.875 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.086 0.914 35 H 0.047 0.953 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.022 0.978 43 H 0.035 0.965 44 H 0.383 0.617 45 H 0.253 0.747 46 H 0.060 0.940 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.481 -14.058 8.614 20.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.099 4.099 3 C -0.213 4.213 4 C -0.174 4.174 5 C 0.299 3.701 6 O -0.377 6.377 7 N -0.349 5.349 8 C -0.008 4.008 9 C -0.178 4.178 10 C -0.142 4.142 11 H 0.130 0.870 12 C 0.400 3.600 13 F -0.152 7.152 14 F -0.172 7.172 15 F -0.163 7.163 16 C -0.132 4.132 17 H 0.112 0.888 18 C 0.019 3.981 19 N -0.368 5.368 20 C -0.364 4.364 21 H 0.084 0.916 22 C -0.206 4.206 23 N -0.577 5.577 24 Si 0.733 3.267 25 H -0.219 1.219 26 H -0.218 1.218 27 H -0.209 1.209 28 C 0.002 3.998 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.067 0.933 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.109 0.891 42 H 0.040 0.960 43 H 0.053 0.947 44 H 0.217 0.783 45 H 0.063 0.937 46 H 0.078 0.922 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.195 -13.605 8.115 19.991 hybrid contribution 0.249 0.926 0.154 0.971 sum -11.946 -12.679 8.268 19.283 Atomic orbital electron populations 1.21858 0.95433 1.01180 1.01849 1.20862 0.94515 0.97449 0.97048 1.21977 1.04484 0.94245 1.00566 1.21782 0.92640 1.02070 1.00883 1.20600 0.89862 0.77259 0.82365 1.90784 1.69726 1.44409 1.32762 1.48014 1.07094 1.59193 1.20601 1.21484 0.96794 0.97904 0.84569 1.22001 0.92441 1.04372 0.98970 1.22443 0.97859 1.02662 0.91244 0.87028 1.20611 0.76505 0.76318 0.86571 1.93160 1.91340 1.34713 1.96019 1.93150 1.88063 1.77300 1.58731 1.93184 1.30597 1.95888 1.96584 1.21828 1.00693 0.98198 0.92501 0.88766 1.21071 0.96458 0.87645 0.92936 1.42231 1.62198 1.05316 1.27036 1.19091 1.26743 0.83772 1.06801 0.91644 1.24657 1.00750 0.97470 0.97684 1.69647 1.38703 1.34161 1.15208 0.86272 0.77486 0.86073 0.76855 1.21922 1.21847 1.20928 1.21552 0.79256 0.99956 0.98995 0.92803 0.92551 0.93060 0.90636 0.93585 0.89495 0.93348 0.89628 0.89260 0.89237 0.91317 0.89803 0.89115 0.96050 0.94727 0.78305 0.93701 0.92223 0.86799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.19 37.16 0.34 -1.09 16 2 C -0.08 -1.03 2.57 -90.62 -0.23 -1.26 16 3 C -0.16 -2.47 8.93 37.16 0.33 -2.14 16 4 C -0.13 -1.57 3.52 -27.88 -0.10 -1.67 16 5 C 0.51 8.15 7.42 -10.99 -0.08 8.07 16 6 O -0.50 -10.64 13.37 5.56 0.07 -10.57 16 7 N -0.61 -8.36 2.40 -173.00 -0.42 -8.77 16 8 C 0.12 1.06 6.31 -3.93 -0.02 1.04 16 9 C -0.14 -1.38 4.73 -26.83 -0.13 -1.51 16 10 C -0.12 -1.39 2.02 -90.58 -0.18 -1.58 16 11 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 12 C 0.45 5.94 2.59 37.16 0.10 6.04 16 13 F -0.17 -2.62 13.37 2.25 0.03 -2.59 16 14 F -0.19 -2.29 17.03 2.25 0.04 -2.25 16 15 F -0.18 -2.64 16.52 2.25 0.04 -2.60 16 16 C -0.11 -1.71 2.12 -90.48 -0.19 -1.90 16 17 H 0.09 1.48 7.61 -51.93 -0.40 1.09 16 18 C 0.15 2.92 4.53 -4.05 -0.02 2.91 16 19 N -0.72 -18.50 5.26 -59.91 -0.32 -18.81 16 20 C -0.23 -6.71 9.99 -15.06 -0.15 -6.86 16 21 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 22 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 23 N -0.93 -28.99 13.06 55.49 0.72 -28.27 16 24 Si 0.90 23.38 29.55 -169.99 -5.02 18.36 16 25 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 26 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 27 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 28 C 0.12 1.90 5.73 -3.69 -0.02 1.88 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 1.07 7.96 -51.93 -0.41 0.65 16 33 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 34 H 0.09 1.79 5.94 -51.93 -0.31 1.48 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 0.76 7.95 -51.93 -0.41 0.34 16 37 H 0.09 0.96 7.68 -51.92 -0.40 0.56 16 38 H 0.09 0.65 5.93 -51.93 -0.31 0.34 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.63 7.95 -51.93 -0.41 0.22 16 41 H 0.09 1.09 5.91 -51.93 -0.31 0.79 16 42 H 0.02 0.44 6.00 -51.93 -0.31 0.13 16 43 H 0.04 0.73 5.42 -51.93 -0.28 0.45 16 44 H 0.38 10.37 6.58 -40.82 -0.27 10.10 16 45 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 46 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.11 2.26 5.68 -51.93 -0.29 1.97 16 LS Contribution 368.94 15.07 5.56 5.56 Total: -1.00 -34.08 368.94 -6.79 -40.87 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -7.04 Total: 7.53 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -0.45 Total: 1.54 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: -0.01 Total: -55.85 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.07 Total: -10.57 kcal Atomic # 9 Polarization: -7.54 SS G_CDS: 0.11 Total: -7.43 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -5.02 Total: 18.36 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.08 -6.79 -40.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707191621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.416 kcal (2) G-P(sol) polarization free energy of solvation -34.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds