Wall clock time and date at job start Sat Apr 11 2020 04:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47554 * 2 1 4 4 C 1.53006 * 109.47442 * 120.00693 * 2 1 3 5 5 C 1.50696 * 109.47379 * 174.99915 * 4 2 1 6 6 O 1.21275 * 120.00180 * 0.27027 * 5 4 2 7 7 N 1.34777 * 119.99905 * 179.97438 * 5 4 2 8 8 C 1.46928 * 120.62928 * 359.71433 * 7 5 4 9 9 C 1.52765 * 109.01034 * 233.58384 * 8 7 5 10 10 C 1.53036 * 109.38413 * 305.59337 * 9 8 7 11 11 H 1.09005 * 109.45993 * 301.22253 * 10 9 8 12 12 C 1.52996 * 109.45231 * 181.25171 * 10 9 8 13 13 F 1.39899 * 109.46891 * 306.47684 * 12 10 9 14 14 F 1.39906 * 109.46796 * 66.47211 * 12 10 9 15 15 F 1.39898 * 109.47343 * 186.47682 * 12 10 9 16 16 C 1.53048 * 109.53956 * 61.23537 * 10 9 8 17 17 H 1.08997 * 109.52185 * 178.66631 * 16 10 9 18 18 C 1.52998 * 109.49576 * 58.58996 * 16 10 9 19 19 N 1.46495 * 109.46962 * 179.20784 * 18 16 10 20 20 C 1.36942 * 119.99883 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99884 * 359.97438 * 20 19 18 22 22 C 1.38814 * 119.99657 * 179.97438 * 20 19 18 23 23 N 1.31614 * 120.00230 * 359.97438 * 22 20 19 24 24 Si 1.86810 * 119.99576 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46952 * 90.00160 * 24 22 20 26 26 H 1.48498 * 109.46861 * 209.99989 * 24 22 20 27 27 H 1.48501 * 109.46862 * 330.00239 * 24 22 20 28 28 C 1.46927 * 120.62987 * 179.97438 * 7 5 4 29 29 H 1.08996 * 109.46644 * 299.99732 * 1 2 3 30 30 H 1.08994 * 109.46975 * 59.99715 * 1 2 3 31 31 H 1.08993 * 109.47161 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47301 * 240.00124 * 2 1 3 33 33 H 1.09010 * 109.46899 * 60.00385 * 3 2 1 34 34 H 1.09005 * 109.47371 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.47705 * 300.00330 * 3 2 1 36 36 H 1.08997 * 109.46942 * 54.98880 * 4 2 1 37 37 H 1.09008 * 109.46568 * 294.99760 * 4 2 1 38 38 H 1.08995 * 109.58632 * 353.42273 * 8 7 5 39 39 H 1.09006 * 109.58525 * 113.84455 * 8 7 5 40 40 H 1.08993 * 109.56582 * 185.55215 * 9 8 7 41 41 H 1.09002 * 109.38278 * 65.51567 * 9 8 7 42 42 H 1.09004 * 109.46774 * 299.20151 * 18 16 10 43 43 H 1.09000 * 109.47438 * 59.20171 * 18 16 10 44 44 H 0.97001 * 120.00493 * 359.97438 * 19 18 16 45 45 H 0.97001 * 119.99836 * 179.97438 * 23 22 20 46 46 H 1.09005 * 109.58591 * 246.15317 * 28 7 5 47 47 H 1.08997 * 109.58501 * 6.43585 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 3.5420 -0.8296 1.1888 6 8 4.1455 -0.3701 0.2425 7 7 4.2150 -1.4316 2.1893 8 6 3.4989 -1.9817 3.3484 9 6 4.1019 -1.4022 4.6268 10 6 5.6104 -1.6600 4.6391 11 1 5.7960 -2.7325 4.5812 12 6 6.2111 -1.1078 5.9333 13 9 5.8468 0.2349 6.0807 14 9 5.7303 -1.8437 7.0217 15 9 7.6054 -1.2096 5.8808 16 6 6.2582 -0.9651 3.4391 17 1 7.3356 -1.1291 3.4612 18 6 5.9689 0.5360 3.5009 19 7 6.6051 1.2031 2.3624 20 6 6.4820 2.5581 2.2066 21 1 5.9156 3.1348 2.9228 22 6 7.0854 3.1903 1.1280 23 7 7.7761 2.4876 0.2555 24 14 6.9169 5.0385 0.9151 25 1 8.0311 5.7216 1.6203 26 1 6.9645 5.3766 -0.5301 27 1 5.6212 5.4864 1.4860 28 6 5.6792 -1.5452 2.1444 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6768 1.9563 0.8901 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9564 -0.8899 36 1 1.6053 -1.7199 1.2951 37 1 1.7517 -0.1585 2.1370 38 1 2.4446 -1.7118 3.2883 39 1 3.6003 -3.0669 3.3592 40 1 3.6445 -1.8777 5.4943 41 1 3.9161 -0.3286 4.6601 42 1 4.8919 0.7002 3.4628 43 1 6.3661 0.9447 4.4300 44 1 7.1136 0.6852 1.7188 45 1 8.1974 2.9293 -0.4984 46 1 5.9617 -2.5942 2.0552 47 1 6.0627 -0.9894 1.2888 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707191621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:06 Heat of formation + Delta-G solvation = -207.299303 kcal Electronic energy + Delta-G solvation = -32265.858950 eV Core-core repulsion = 27646.673735 eV Total energy + Delta-G solvation = -4619.185214 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -51.11529 -48.59510 -48.54272 -41.42248 -39.27435 -36.43131 -36.34991 -34.68076 -33.32535 -31.65935 -29.55145 -28.30061 -27.92537 -26.88639 -25.03934 -24.44057 -23.39466 -21.95086 -20.66361 -19.81292 -19.43476 -19.19852 -19.14766 -18.39333 -17.65102 -16.96275 -16.72309 -16.48592 -15.98257 -15.83632 -15.62954 -15.35221 -15.27981 -15.08765 -14.90379 -14.76841 -14.69636 -14.65182 -14.43202 -14.11165 -13.93100 -13.80145 -13.75558 -13.24204 -13.04757 -13.00472 -12.92080 -12.74835 -12.66950 -12.25118 -12.24050 -12.04038 -11.95516 -11.80561 -11.71234 -11.64173 -11.51074 -11.48800 -10.89248 -10.47757 -9.50415 -8.92236 -7.93302 -5.19403 1.39716 1.42688 1.50208 1.77744 1.88397 2.18240 2.53474 2.83983 2.97420 3.09161 3.40449 3.61117 3.68666 3.76946 3.89682 3.96389 4.02974 4.05661 4.14338 4.28359 4.37459 4.44485 4.51587 4.60606 4.65051 4.73182 4.73429 4.75436 4.81555 4.86313 4.88470 5.00566 5.07690 5.12645 5.15439 5.18354 5.29307 5.33353 5.45545 5.48996 5.58177 5.69888 6.28024 6.59360 7.34614 7.46188 8.12732 8.34048 9.30366 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.007592 B = 0.006143 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3687.442718 B = 4557.136828 C = 7286.825081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.079 4.079 3 C -0.152 4.152 4 C -0.125 4.125 5 C 0.497 3.503 6 O -0.572 6.572 7 N -0.611 5.611 8 C 0.110 3.890 9 C -0.137 4.137 10 C -0.111 4.111 11 H 0.153 0.847 12 C 0.451 3.549 13 F -0.188 7.188 14 F -0.179 7.179 15 F -0.193 7.193 16 C -0.103 4.103 17 H 0.085 0.915 18 C 0.149 3.851 19 N -0.734 5.734 20 C -0.235 4.235 21 H 0.065 0.935 22 C -0.072 4.072 23 N -0.965 5.965 24 Si 0.964 3.036 25 H -0.284 1.284 26 H -0.297 1.297 27 H -0.272 1.272 28 C 0.128 3.872 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.031 0.969 35 H 0.049 0.951 36 H 0.129 0.871 37 H 0.107 0.893 38 H 0.116 0.884 39 H 0.107 0.893 40 H 0.121 0.879 41 H 0.064 0.936 42 H 0.019 0.981 43 H 0.027 0.973 44 H 0.371 0.629 45 H 0.248 0.752 46 H 0.095 0.905 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.357 -16.268 10.859 24.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.098 4.098 3 C -0.210 4.210 4 C -0.164 4.164 5 C 0.287 3.713 6 O -0.450 6.450 7 N -0.345 5.345 8 C -0.011 4.011 9 C -0.175 4.175 10 C -0.131 4.131 11 H 0.170 0.830 12 C 0.397 3.603 13 F -0.170 7.170 14 F -0.161 7.161 15 F -0.175 7.175 16 C -0.123 4.123 17 H 0.103 0.897 18 C 0.023 3.977 19 N -0.376 5.376 20 C -0.367 4.367 21 H 0.083 0.917 22 C -0.265 4.265 23 N -0.616 5.616 24 Si 0.794 3.206 25 H -0.211 1.211 26 H -0.223 1.223 27 H -0.198 1.198 28 C 0.004 3.996 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.147 0.853 37 H 0.125 0.875 38 H 0.134 0.866 39 H 0.125 0.875 40 H 0.139 0.861 41 H 0.083 0.917 42 H 0.037 0.963 43 H 0.045 0.955 44 H 0.204 0.796 45 H 0.057 0.943 46 H 0.113 0.887 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.110 -15.844 10.450 24.260 hybrid contribution 1.153 1.585 -0.454 2.011 sum -13.957 -14.260 9.997 22.318 Atomic orbital electron populations 1.21780 0.92259 1.02968 1.02372 1.20835 0.96918 0.94873 0.97127 1.21908 1.00865 0.97222 1.00978 1.21830 0.89330 1.04542 1.00702 1.21493 0.91714 0.76227 0.81848 1.90772 1.71320 1.47295 1.35629 1.48161 1.06443 1.58392 1.21523 1.21924 0.97522 0.99805 0.81827 1.22058 0.91169 1.03303 1.00994 1.22488 0.98547 1.04111 0.87933 0.82979 1.20886 0.76050 0.75718 0.87618 1.93125 1.91419 1.36304 1.96147 1.93170 1.87804 1.76798 1.58303 1.93165 1.31734 1.95874 1.96689 1.21641 1.00765 0.95063 0.94823 0.89700 1.21166 0.95458 0.90819 0.90265 1.42417 1.62366 1.04533 1.28318 1.19440 1.25515 0.85446 1.06326 0.91659 1.25451 1.01340 1.01852 0.97830 1.69817 1.40225 1.35719 1.15798 0.85272 0.77930 0.81048 0.76377 1.21122 1.22327 1.19753 1.21355 0.80680 1.00915 0.96604 0.91640 0.92744 0.90592 0.92668 0.92862 0.94937 0.93206 0.85287 0.87519 0.86552 0.87493 0.86055 0.91714 0.96292 0.95507 0.79646 0.94341 0.88695 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.19 71.98 0.66 -1.60 16 2 C -0.08 -1.96 2.57 -10.79 -0.03 -1.99 16 3 C -0.15 -5.04 8.93 71.98 0.64 -4.39 16 4 C -0.12 -2.62 3.52 29.85 0.11 -2.51 16 5 C 0.50 15.79 7.42 87.66 0.65 16.44 16 6 O -0.57 -25.87 13.37 -3.01 -0.04 -25.91 16 7 N -0.61 -15.62 2.40 -819.65 -1.97 -17.59 16 8 C 0.11 1.48 6.31 86.22 0.54 2.03 16 9 C -0.14 -2.14 4.73 30.53 0.14 -2.00 16 10 C -0.11 -2.19 2.02 -10.77 -0.02 -2.21 16 11 H 0.15 1.89 8.14 -2.38 -0.02 1.87 16 12 C 0.45 10.85 2.59 71.98 0.19 11.03 16 13 F -0.19 -5.61 13.37 44.97 0.60 -5.01 16 14 F -0.18 -3.69 17.03 44.97 0.77 -2.93 16 15 F -0.19 -5.40 16.52 44.97 0.74 -4.66 16 16 C -0.10 -3.09 2.12 -10.70 -0.02 -3.12 16 17 H 0.08 2.70 7.61 -2.39 -0.02 2.68 16 18 C 0.15 6.11 4.53 86.38 0.39 6.50 16 19 N -0.73 -39.49 5.26 -343.45 -1.81 -41.30 16 20 C -0.24 -14.11 9.99 84.03 0.84 -13.27 16 21 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 22 C -0.07 -4.47 5.50 84.86 0.47 -4.00 16 23 N -0.96 -63.28 13.06 21.65 0.28 -62.99 16 24 Si 0.96 49.72 29.55 68.60 2.03 51.74 16 25 H -0.28 -14.20 7.11 99.48 0.71 -13.49 16 26 H -0.30 -15.39 7.11 99.48 0.71 -14.69 16 27 H -0.27 -13.38 7.11 99.48 0.71 -12.67 16 28 C 0.13 3.86 5.73 86.38 0.49 4.35 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.05 1.59 7.96 -2.39 -0.02 1.57 16 33 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.03 1.43 5.94 -2.38 -0.01 1.42 16 35 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.13 1.61 7.95 -2.39 -0.02 1.60 16 37 H 0.11 1.90 7.68 -2.38 -0.02 1.89 16 38 H 0.12 1.00 5.93 -2.39 -0.01 0.99 16 39 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 40 H 0.12 1.10 7.95 -2.39 -0.02 1.08 16 41 H 0.06 1.39 5.91 -2.39 -0.01 1.38 16 42 H 0.02 0.80 6.00 -2.38 -0.01 0.79 16 43 H 0.03 1.17 5.42 -2.39 -0.01 1.16 16 44 H 0.37 21.51 6.58 -92.71 -0.61 20.90 16 45 H 0.25 15.81 8.31 -92.71 -0.77 15.04 16 46 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 47 H 0.06 2.49 5.68 -2.39 -0.01 2.48 16 Total: -1.00 -82.88 368.94 6.05 -76.83 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.38 Total: 26.55 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 5.06 Total: 5.27 kcal Atomic # 7 Polarization: -118.39 SS G_CDS: -3.49 Total: -121.88 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.04 Total: -25.91 kcal Atomic # 9 Polarization: -14.71 SS G_CDS: 2.11 Total: -12.60 kcal Atomic # 14 Polarization: 49.72 SS G_CDS: 2.03 Total: 51.74 kcal Total: -82.88 6.05 -76.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707191621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.470 kcal (2) G-P(sol) polarization free energy of solvation -82.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds