Wall clock time and date at job start Sat Apr 11 2020 04:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47170 * 2 1 4 4 C 1.50704 * 109.47067 * 120.00143 * 2 1 3 5 5 O 1.33655 * 125.80080 * 300.13794 * 4 2 1 6 6 C 1.34213 * 110.91072 * 180.26919 * 5 4 2 7 7 C 1.34179 * 109.12247 * 359.76278 * 6 5 4 8 8 C 1.36415 * 125.80398 * 119.99828 * 4 2 1 9 9 C 1.47374 * 127.19136 * 0.02562 * 8 4 2 10 10 O 1.21614 * 120.00477 * 48.05446 * 9 8 4 11 11 N 1.34784 * 119.99902 * 228.06091 * 9 8 4 12 12 C 1.46928 * 120.62744 * 355.78163 * 11 9 8 13 13 C 1.53190 * 108.89304 * 126.46626 * 12 11 9 14 14 C 1.53041 * 109.31250 * 54.55763 * 13 12 11 15 15 C 1.53038 * 109.53842 * 298.63329 * 14 13 12 16 16 C 1.53007 * 109.49427 * 181.31446 * 15 14 13 17 17 O 1.42897 * 109.46945 * 180.02562 * 16 15 14 18 18 N 1.46493 * 109.50242 * 301.41700 * 15 14 13 19 19 C 1.36933 * 120.00073 * 180.02562 * 18 15 14 20 20 H 1.08003 * 120.00201 * 359.97438 * 19 18 15 21 21 C 1.38809 * 120.00088 * 180.02562 * 19 18 15 22 22 N 1.31626 * 120.00422 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 120.00140 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47312 * 90.00235 * 23 21 19 25 25 H 1.48502 * 109.47554 * 210.00662 * 23 21 19 26 26 H 1.48506 * 109.47026 * 330.00487 * 23 21 19 27 27 C 1.46964 * 120.65533 * 175.59782 * 11 9 8 28 28 H 1.09000 * 109.47197 * 300.00175 * 1 2 3 29 29 H 1.08993 * 109.46764 * 60.00497 * 1 2 3 30 30 H 1.09008 * 109.46997 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46677 * 239.99807 * 2 1 3 32 32 H 1.09002 * 109.47011 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46733 * 299.99616 * 3 2 1 34 34 H 1.09000 * 109.47203 * 59.99829 * 3 2 1 35 35 H 1.07995 * 125.44213 * 179.76205 * 6 5 4 36 36 H 1.08003 * 127.02520 * 180.02562 * 7 6 5 37 37 H 1.08998 * 109.58805 * 6.60202 * 12 11 9 38 38 H 1.09001 * 109.58502 * 246.32109 * 12 11 9 39 39 H 1.08991 * 109.49690 * 174.51576 * 13 12 11 40 40 H 1.09004 * 109.49482 * 294.60657 * 13 12 11 41 41 H 1.09001 * 109.45925 * 58.66223 * 14 13 12 42 42 H 1.09006 * 109.45319 * 178.61607 * 14 13 12 43 43 H 1.08997 * 109.47407 * 300.00538 * 16 15 14 44 44 H 1.09000 * 109.46453 * 60.00516 * 16 15 14 45 45 H 0.96697 * 114.00156 * 180.02562 * 17 16 15 46 46 H 0.97000 * 119.99982 * 359.97438 * 18 15 14 47 47 H 0.96999 * 120.00341 * 180.02562 * 22 21 19 48 48 H 1.08992 * 109.46303 * 113.74680 * 27 11 9 49 49 H 1.08997 * 109.59332 * 353.39588 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 1.7798 -0.3579 2.4947 6 6 2.3802 -1.1954 3.3546 7 6 3.0457 -2.1330 2.6629 8 6 2.8199 -1.8243 1.2433 9 6 3.3410 -2.5603 0.0777 10 8 3.8743 -1.9571 -0.8337 11 7 3.2263 -3.9021 0.0217 12 6 2.6683 -4.6536 1.1543 13 6 1.5203 -5.5329 0.6487 14 6 2.0225 -6.4094 -0.5009 15 6 2.4941 -5.5206 -1.6540 16 6 2.9654 -6.3982 -2.8154 17 8 3.4062 -5.5678 -3.8915 18 7 1.3876 -4.6706 -2.1003 19 6 1.5752 -3.7867 -3.1292 20 1 2.5390 -3.7159 -3.6115 21 6 0.5270 -2.9808 -3.5518 22 7 0.7074 -2.1308 -4.5404 23 14 -1.1398 -3.1026 -2.7173 24 1 -1.1943 -2.1502 -1.5791 25 1 -2.2078 -2.7688 -3.6936 26 1 -1.3424 -4.4856 -2.2156 27 6 3.6533 -4.6414 -1.1745 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9562 -0.8901 34 1 1.6767 1.9563 0.8900 35 1 2.3350 -1.1258 4.4314 36 1 3.6279 -2.9482 3.0665 37 1 2.2927 -3.9581 1.9048 38 1 3.4434 -5.2816 1.5935 39 1 1.1628 -6.1666 1.4602 40 1 0.7061 -4.9002 0.2949 41 1 2.8528 -7.0240 -0.1529 42 1 1.2139 -7.0537 -0.8462 43 1 3.7896 -7.0293 -2.4828 44 1 2.1411 -7.0258 -3.1542 45 1 3.7194 -6.0581 -4.6638 46 1 0.5219 -4.7343 -1.6675 47 1 -0.0251 -1.5674 -4.8355 48 1 4.5098 -5.2685 -0.9275 49 1 3.9275 -3.9378 -1.9605 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724913708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:43:53 Heat of formation + Delta-G solvation = -46.558707 kcal Electronic energy + Delta-G solvation = -32367.253256 eV Core-core repulsion = 28296.895018 eV Total energy + Delta-G solvation = -4070.358239 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.44249 -39.69207 -37.66505 -35.73835 -35.18271 -33.92113 -32.72044 -32.05192 -31.08186 -29.25167 -28.90572 -26.90893 -25.76838 -25.30907 -23.19430 -22.62707 -22.36505 -21.58963 -20.37124 -18.86585 -18.13656 -17.74543 -17.09004 -16.30414 -16.16550 -15.71460 -15.53703 -14.93217 -14.74229 -14.39531 -14.29708 -14.05101 -13.87983 -13.43862 -13.35745 -12.99836 -12.87896 -12.79142 -12.67909 -12.45213 -12.22486 -12.05321 -11.94653 -11.77277 -11.26949 -11.14170 -11.01572 -10.94382 -10.72815 -10.68303 -10.56048 -10.45741 -10.11784 -9.91258 -9.59920 -9.43077 -9.23327 -8.91689 -8.81398 -8.39637 -8.01379 -7.07418 -5.50100 -2.85137 1.77983 2.27335 2.97389 3.35070 3.42795 3.44832 3.52362 3.74899 4.59741 4.70811 4.79878 4.92009 5.03770 5.09968 5.11095 5.21505 5.26859 5.37530 5.38314 5.49965 5.53928 5.62811 5.75179 5.75891 5.78302 5.83508 5.86699 5.86926 5.96847 6.04793 6.06355 6.08990 6.10049 6.16961 6.19321 6.24343 6.37125 6.41893 6.53700 6.56479 6.58248 6.58607 6.92056 7.13335 7.25588 7.99894 8.31257 8.41784 8.70220 8.83012 9.48087 10.15033 10.30579 11.68319 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010430 B = 0.006385 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2683.975004 B = 4384.444886 C = 5679.515488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.025 4.025 3 C -0.141 4.141 4 C 0.077 3.923 5 O -0.175 6.175 6 C -0.047 4.047 7 C -0.191 4.191 8 C -0.228 4.228 9 C 0.593 3.407 10 O -0.521 6.521 11 N -0.589 5.589 12 C 0.104 3.896 13 C -0.132 4.132 14 C -0.119 4.119 15 C 0.195 3.805 16 C 0.077 3.923 17 O -0.534 6.534 18 N -0.729 5.729 19 C -0.206 4.206 20 H 0.116 0.884 21 C 0.000 4.000 22 N -0.935 5.935 23 Si 0.860 3.140 24 H -0.281 1.281 25 H -0.296 1.296 26 H -0.285 1.285 27 C 0.114 3.886 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.122 0.878 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.203 0.797 36 H 0.154 0.846 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.025 0.975 44 H 0.038 0.962 45 H 0.355 0.645 46 H 0.357 0.643 47 H 0.253 0.747 48 H 0.046 0.954 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.405 -4.743 16.303 17.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.043 4.043 3 C -0.198 4.198 4 C 0.025 3.975 5 O -0.072 6.072 6 C -0.113 4.113 7 C -0.210 4.210 8 C -0.233 4.233 9 C 0.380 3.620 10 O -0.397 6.397 11 N -0.322 5.322 12 C -0.020 4.020 13 C -0.170 4.170 14 C -0.157 4.157 15 C 0.102 3.898 16 C -0.004 4.004 17 O -0.336 6.336 18 N -0.371 5.371 19 C -0.336 4.336 20 H 0.134 0.866 21 C -0.193 4.193 22 N -0.585 5.585 23 Si 0.692 3.308 24 H -0.208 1.208 25 H -0.223 1.223 26 H -0.212 1.212 27 C -0.010 4.010 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.140 0.860 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.220 0.780 36 H 0.172 0.828 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.043 0.957 44 H 0.057 0.943 45 H 0.200 0.800 46 H 0.191 0.809 47 H 0.063 0.937 48 H 0.065 0.935 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.430 -3.547 16.129 16.867 hybrid contribution -1.218 -0.985 0.372 1.610 sum 2.212 -4.532 16.501 17.254 Atomic orbital electron populations 1.21899 0.93557 1.02865 1.01977 1.20061 0.96427 0.96391 0.91402 1.21791 1.01627 0.94280 1.02117 1.22766 0.96888 0.94193 0.83703 1.83716 1.59671 1.48536 1.15250 1.23752 0.99815 0.92407 0.95365 1.22791 1.04854 1.02078 0.91307 1.21248 1.07832 1.00114 0.94087 1.17114 0.78773 0.81472 0.84623 1.90819 1.43094 1.67475 1.38285 1.47620 1.62375 1.05494 1.16681 1.21828 0.95507 0.95314 0.89319 1.21861 0.98735 0.98464 0.97946 1.21676 1.00980 0.97636 0.95418 1.19908 0.89472 0.90016 0.90435 1.22640 0.95941 0.92632 0.89161 1.86944 1.85470 1.34734 1.26489 1.42803 1.07976 1.45364 1.41005 1.19414 0.99332 1.09230 1.05641 0.86624 1.24589 0.96550 0.99442 0.98760 1.69686 1.31021 1.27481 1.30285 0.86946 0.87289 0.77163 0.79400 1.20765 1.22327 1.21157 1.22095 0.95293 0.96181 0.87454 0.92743 0.91367 0.91999 0.86017 0.92081 0.91341 0.92685 0.78021 0.82846 0.89360 0.92138 0.91332 0.91115 0.91503 0.91604 0.95668 0.94349 0.80024 0.80933 0.93700 0.93535 0.87248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.18 37.16 0.34 -2.18 16 2 C -0.02 -0.45 3.27 -91.77 -0.30 -0.75 16 3 C -0.14 -2.15 9.18 37.16 0.34 -1.81 16 4 C 0.08 1.33 5.88 -34.96 -0.21 1.12 16 5 O -0.18 -2.58 10.52 7.65 0.08 -2.50 16 6 C -0.05 -0.55 12.03 29.30 0.35 -0.19 16 7 C -0.19 -2.48 8.76 -37.45 -0.33 -2.81 16 8 C -0.23 -4.01 5.28 -103.28 -0.55 -4.56 16 9 C 0.59 12.22 7.18 -12.54 -0.09 12.13 16 10 O -0.52 -12.93 15.61 5.27 0.08 -12.85 16 11 N -0.59 -10.68 2.90 -174.03 -0.51 -11.18 16 12 C 0.10 1.43 5.96 -3.71 -0.02 1.40 16 13 C -0.13 -1.80 5.91 -26.61 -0.16 -1.96 16 14 C -0.12 -1.69 4.76 -26.69 -0.13 -1.82 16 15 C 0.19 3.58 0.68 -131.70 -0.09 3.49 16 16 C 0.08 1.32 6.08 37.16 0.23 1.55 16 17 O -0.53 -10.53 10.10 -35.23 -0.36 -10.88 16 18 N -0.73 -16.78 4.56 -47.13 -0.21 -17.00 16 19 C -0.21 -5.77 8.70 -15.06 -0.13 -5.90 16 20 H 0.12 3.60 5.51 -52.48 -0.29 3.31 16 21 C 0.00 0.00 5.50 -17.43 -0.10 -0.09 16 22 N -0.93 -29.98 13.97 55.49 0.78 -29.20 16 23 Si 0.86 22.17 27.74 -169.99 -4.71 17.46 16 24 H -0.28 -7.00 6.01 56.52 0.34 -6.66 16 25 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 26 H -0.28 -6.98 6.52 56.52 0.37 -6.61 16 27 C 0.11 2.18 4.84 -3.69 -0.02 2.16 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 1.19 7.04 -51.92 -0.37 0.82 16 31 H 0.12 2.74 6.78 -51.93 -0.35 2.38 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.20 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.15 1.58 7.70 -52.48 -0.40 1.17 16 37 H 0.09 1.15 4.47 -51.93 -0.23 0.92 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 1.17 6.75 -51.93 -0.35 0.82 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.35 5.27 9.12 45.56 0.42 5.68 16 46 H 0.36 8.28 4.28 -40.82 -0.17 8.10 16 47 H 0.25 7.81 8.31 -40.82 -0.34 7.47 16 48 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.11 2.63 5.74 -51.93 -0.30 2.33 16 LS Contribution 379.68 15.07 5.72 5.72 Total: -1.00 -36.26 379.68 -6.76 -43.02 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: -6.78 Total: 17.63 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -0.85 Total: -0.21 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: 0.06 Total: -57.38 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.19 Total: -26.24 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.71 Total: 17.46 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.26 -6.76 -43.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724913708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.542 kcal (2) G-P(sol) polarization free energy of solvation -36.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds