Wall clock time and date at job start Sat Apr 11 2020 04:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47170 * 2 1 4 4 C 1.50704 * 109.47067 * 120.00143 * 2 1 3 5 5 O 1.33655 * 125.80080 * 300.13794 * 4 2 1 6 6 C 1.34213 * 110.91072 * 180.26919 * 5 4 2 7 7 C 1.34179 * 109.12247 * 359.76278 * 6 5 4 8 8 C 1.36415 * 125.80398 * 119.99828 * 4 2 1 9 9 C 1.47374 * 127.19136 * 0.02562 * 8 4 2 10 10 O 1.21614 * 120.00477 * 48.05446 * 9 8 4 11 11 N 1.34784 * 119.99902 * 228.06091 * 9 8 4 12 12 C 1.46928 * 120.62744 * 355.78163 * 11 9 8 13 13 C 1.53190 * 108.89304 * 126.46626 * 12 11 9 14 14 C 1.53041 * 109.31250 * 54.55763 * 13 12 11 15 15 C 1.53038 * 109.53842 * 298.63329 * 14 13 12 16 16 C 1.53007 * 109.49427 * 181.31446 * 15 14 13 17 17 O 1.42897 * 109.46945 * 180.02562 * 16 15 14 18 18 N 1.46493 * 109.50242 * 301.41700 * 15 14 13 19 19 C 1.36933 * 120.00073 * 180.02562 * 18 15 14 20 20 H 1.08003 * 120.00201 * 359.97438 * 19 18 15 21 21 C 1.38809 * 120.00088 * 180.02562 * 19 18 15 22 22 N 1.31626 * 120.00422 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 120.00140 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47312 * 90.00235 * 23 21 19 25 25 H 1.48502 * 109.47554 * 210.00662 * 23 21 19 26 26 H 1.48506 * 109.47026 * 330.00487 * 23 21 19 27 27 C 1.46964 * 120.65533 * 175.59782 * 11 9 8 28 28 H 1.09000 * 109.47197 * 300.00175 * 1 2 3 29 29 H 1.08993 * 109.46764 * 60.00497 * 1 2 3 30 30 H 1.09008 * 109.46997 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46677 * 239.99807 * 2 1 3 32 32 H 1.09002 * 109.47011 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46733 * 299.99616 * 3 2 1 34 34 H 1.09000 * 109.47203 * 59.99829 * 3 2 1 35 35 H 1.07995 * 125.44213 * 179.76205 * 6 5 4 36 36 H 1.08003 * 127.02520 * 180.02562 * 7 6 5 37 37 H 1.08998 * 109.58805 * 6.60202 * 12 11 9 38 38 H 1.09001 * 109.58502 * 246.32109 * 12 11 9 39 39 H 1.08991 * 109.49690 * 174.51576 * 13 12 11 40 40 H 1.09004 * 109.49482 * 294.60657 * 13 12 11 41 41 H 1.09001 * 109.45925 * 58.66223 * 14 13 12 42 42 H 1.09006 * 109.45319 * 178.61607 * 14 13 12 43 43 H 1.08997 * 109.47407 * 300.00538 * 16 15 14 44 44 H 1.09000 * 109.46453 * 60.00516 * 16 15 14 45 45 H 0.96697 * 114.00156 * 180.02562 * 17 16 15 46 46 H 0.97000 * 119.99982 * 359.97438 * 18 15 14 47 47 H 0.96999 * 120.00341 * 180.02562 * 22 21 19 48 48 H 1.08992 * 109.46303 * 113.74680 * 27 11 9 49 49 H 1.08997 * 109.59332 * 353.39588 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 1.7798 -0.3579 2.4947 6 6 2.3802 -1.1954 3.3546 7 6 3.0457 -2.1330 2.6629 8 6 2.8199 -1.8243 1.2433 9 6 3.3410 -2.5603 0.0777 10 8 3.8743 -1.9571 -0.8337 11 7 3.2263 -3.9021 0.0217 12 6 2.6683 -4.6536 1.1543 13 6 1.5203 -5.5329 0.6487 14 6 2.0225 -6.4094 -0.5009 15 6 2.4941 -5.5206 -1.6540 16 6 2.9654 -6.3982 -2.8154 17 8 3.4062 -5.5678 -3.8915 18 7 1.3876 -4.6706 -2.1003 19 6 1.5752 -3.7867 -3.1292 20 1 2.5390 -3.7159 -3.6115 21 6 0.5270 -2.9808 -3.5518 22 7 0.7074 -2.1308 -4.5404 23 14 -1.1398 -3.1026 -2.7173 24 1 -1.1943 -2.1502 -1.5791 25 1 -2.2078 -2.7688 -3.6936 26 1 -1.3424 -4.4856 -2.2156 27 6 3.6533 -4.6414 -1.1745 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9562 -0.8901 34 1 1.6767 1.9563 0.8900 35 1 2.3350 -1.1258 4.4314 36 1 3.6279 -2.9482 3.0665 37 1 2.2927 -3.9581 1.9048 38 1 3.4434 -5.2816 1.5935 39 1 1.1628 -6.1666 1.4602 40 1 0.7061 -4.9002 0.2949 41 1 2.8528 -7.0240 -0.1529 42 1 1.2139 -7.0537 -0.8462 43 1 3.7896 -7.0293 -2.4828 44 1 2.1411 -7.0258 -3.1542 45 1 3.7194 -6.0581 -4.6638 46 1 0.5219 -4.7343 -1.6675 47 1 -0.0251 -1.5674 -4.8355 48 1 4.5098 -5.2685 -0.9275 49 1 3.9275 -3.9378 -1.9605 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724913708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:43:53 Heat of formation + Delta-G solvation = -75.229556 kcal Electronic energy + Delta-G solvation = -32368.496518 eV Core-core repulsion = 28296.895018 eV Total energy + Delta-G solvation = -4071.601500 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.57843 -41.13070 -39.22268 -37.18784 -36.54646 -35.64897 -34.24567 -33.48367 -32.66754 -31.01050 -30.09327 -28.24610 -27.22491 -26.56258 -25.25538 -23.95991 -23.52439 -22.83790 -21.64016 -20.34732 -19.67550 -19.46704 -18.40558 -17.88039 -17.46232 -17.01174 -16.95874 -16.44375 -16.13691 -16.09039 -15.75180 -15.49426 -15.33008 -14.88770 -14.71469 -14.54180 -14.20951 -14.18160 -14.11426 -13.87086 -13.53271 -13.44477 -13.38912 -13.25650 -12.96672 -12.76426 -12.57580 -12.30559 -12.24295 -12.11670 -12.00767 -11.91300 -11.76650 -11.41073 -11.36517 -11.04798 -10.84222 -10.58077 -10.50974 -9.64491 -9.47834 -9.04859 -7.80029 -5.11347 0.53273 1.23224 1.29524 1.35751 1.40683 1.77491 1.96797 2.38846 2.57282 3.35943 3.46481 3.53595 3.66167 3.70626 3.82057 3.95431 4.00231 4.05070 4.08567 4.15040 4.24948 4.28560 4.52452 4.53656 4.58812 4.59499 4.62045 4.67353 4.72475 4.73859 4.78882 4.82062 4.87473 4.93567 4.99803 5.01077 5.05872 5.12968 5.16495 5.19249 5.39300 5.41259 5.46279 5.73409 6.10764 6.14552 6.46414 6.57422 7.11899 7.32419 7.33081 8.00587 8.16892 9.42608 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010430 B = 0.006385 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2683.975004 B = 4384.444886 C = 5679.515488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.026 4.026 3 C -0.133 4.133 4 C 0.056 3.944 5 O -0.175 6.175 6 C -0.021 4.021 7 C -0.194 4.194 8 C -0.251 4.251 9 C 0.579 3.421 10 O -0.587 6.587 11 N -0.588 5.588 12 C 0.096 3.904 13 C -0.130 4.130 14 C -0.112 4.112 15 C 0.180 3.820 16 C 0.074 3.926 17 O -0.574 6.574 18 N -0.731 5.731 19 C -0.167 4.167 20 H 0.076 0.924 21 C -0.079 4.079 22 N -0.993 5.993 23 Si 0.926 3.074 24 H -0.274 1.274 25 H -0.309 1.309 26 H -0.258 1.258 27 C 0.118 3.882 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.260 0.740 36 H 0.186 0.814 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.035 0.965 41 H 0.107 0.893 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.041 0.959 45 H 0.373 0.627 46 H 0.358 0.642 47 H 0.245 0.755 48 H 0.079 0.921 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.879 -7.500 21.764 23.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.045 4.045 3 C -0.190 4.190 4 C 0.004 3.996 5 O -0.071 6.071 6 C -0.086 4.086 7 C -0.213 4.213 8 C -0.255 4.255 9 C 0.368 3.632 10 O -0.468 6.468 11 N -0.318 5.318 12 C -0.025 4.025 13 C -0.168 4.168 14 C -0.150 4.150 15 C 0.090 3.910 16 C -0.006 4.006 17 O -0.379 6.379 18 N -0.373 5.373 19 C -0.299 4.299 20 H 0.093 0.907 21 C -0.268 4.268 22 N -0.647 5.647 23 Si 0.757 3.243 24 H -0.201 1.201 25 H -0.237 1.237 26 H -0.183 1.183 27 C -0.006 4.006 28 H 0.106 0.894 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.275 0.725 36 H 0.203 0.797 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.132 0.868 40 H 0.054 0.946 41 H 0.125 0.875 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.060 0.940 45 H 0.221 0.779 46 H 0.192 0.808 47 H 0.054 0.946 48 H 0.097 0.903 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.913 -6.418 21.668 22.785 hybrid contribution -0.858 -0.225 -1.273 1.552 sum 2.055 -6.643 20.394 21.547 Atomic orbital electron populations 1.21830 0.92942 1.01526 1.03201 1.19804 0.96900 0.97451 0.90351 1.21737 1.00940 0.92798 1.03517 1.22398 0.98216 0.94542 0.84486 1.83718 1.59974 1.49169 1.14239 1.24854 0.96776 0.90038 0.96914 1.23062 1.06000 1.03879 0.88380 1.21290 1.08433 1.00371 0.95424 1.17767 0.78139 0.82408 0.84895 1.90778 1.46204 1.68978 1.40888 1.47798 1.61529 1.05049 1.17464 1.22239 0.96743 0.95651 0.87844 1.21898 0.97444 0.98406 0.99089 1.21706 1.02752 0.97065 0.93469 1.20412 0.87730 0.90100 0.92798 1.22717 0.97614 0.92219 0.88019 1.86899 1.85872 1.36990 1.28164 1.42788 1.09565 1.45241 1.39726 1.19209 0.97133 1.08431 1.05098 0.90662 1.25301 1.00900 1.00189 1.00376 1.69906 1.31912 1.29670 1.33226 0.85832 0.81925 0.78498 0.78085 1.20084 1.23656 1.18312 1.21903 0.96875 0.95142 0.86689 0.89420 0.92108 0.94465 0.92017 0.93081 0.91261 0.89821 0.72466 0.79684 0.88391 0.88063 0.86752 0.94610 0.87469 0.90638 0.91316 0.94042 0.77927 0.80836 0.94625 0.90294 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.90 9.18 71.98 0.66 -4.24 16 2 C -0.03 -1.02 3.27 -11.54 -0.04 -1.06 16 3 C -0.13 -4.22 9.18 71.98 0.66 -3.56 16 4 C 0.06 1.94 5.88 25.26 0.15 2.09 16 5 O -0.17 -4.65 10.52 4.47 0.05 -4.60 16 6 C -0.02 -0.38 12.03 66.89 0.80 0.43 16 7 C -0.19 -4.31 8.76 23.65 0.21 -4.10 16 8 C -0.25 -8.75 5.28 -18.99 -0.10 -8.85 16 9 C 0.58 24.92 7.18 86.65 0.62 25.54 16 10 O -0.59 -32.08 15.61 -4.07 -0.06 -32.14 16 11 N -0.59 -21.01 2.90 -822.75 -2.39 -23.40 16 12 C 0.10 2.27 5.96 86.36 0.51 2.78 16 13 C -0.13 -2.98 5.91 30.67 0.18 -2.80 16 14 C -0.11 -2.67 4.76 30.62 0.15 -2.53 16 15 C 0.18 6.41 0.68 3.68 0.00 6.41 16 16 C 0.07 2.43 6.08 71.98 0.44 2.87 16 17 O -0.57 -23.50 10.10 -148.98 -1.50 -25.01 16 18 N -0.73 -34.14 4.56 -303.01 -1.38 -35.52 16 19 C -0.17 -9.92 8.70 84.03 0.73 -9.19 16 20 H 0.08 5.10 5.51 -2.91 -0.02 5.08 16 21 C -0.08 -4.99 5.50 84.86 0.47 -4.52 16 22 N -0.99 -68.68 13.97 21.65 0.30 -68.37 16 23 Si 0.93 48.20 27.74 68.60 1.90 50.11 16 24 H -0.27 -13.80 6.01 99.48 0.60 -13.20 16 25 H -0.31 -16.59 7.11 99.48 0.71 -15.88 16 26 H -0.26 -12.06 6.52 99.48 0.65 -11.41 16 27 C 0.12 4.55 4.84 86.35 0.42 4.97 16 28 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.04 1.46 7.04 -2.38 -0.02 1.45 16 31 H 0.06 3.12 6.78 -2.39 -0.02 3.10 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 34 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.26 1.57 8.06 -2.91 -0.02 1.55 16 36 H 0.19 2.80 7.70 -2.91 -0.02 2.77 16 37 H 0.10 2.15 4.47 -2.39 -0.01 2.14 16 38 H 0.10 1.63 8.14 -2.39 -0.02 1.62 16 39 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.04 1.08 6.75 -2.38 -0.02 1.07 16 41 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 43 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.37 11.52 9.12 -74.06 -0.68 10.84 16 46 H 0.36 16.46 4.28 -92.71 -0.40 16.06 16 47 H 0.24 16.36 8.31 -92.71 -0.77 15.59 16 48 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 49 H 0.05 2.43 5.74 -2.39 -0.01 2.42 16 Total: -1.00 -92.98 379.68 2.52 -90.46 By element: Atomic # 1 Polarization: 44.49 SS G_CDS: -0.26 Total: 44.23 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 5.86 Total: 4.24 kcal Atomic # 7 Polarization: -123.82 SS G_CDS: -3.47 Total: -127.29 kcal Atomic # 8 Polarization: -60.22 SS G_CDS: -1.52 Total: -61.74 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 1.90 Total: 50.11 kcal Total: -92.98 2.52 -90.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724913708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.228 kcal (2) G-P(sol) polarization free energy of solvation -92.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds