Wall clock time and date at job start Sat Apr 11 2020 04:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47374 * 2 1 4 4 C 1.53001 * 109.47002 * 239.99754 * 2 1 3 5 5 O 1.45196 * 109.46902 * 120.00296 * 2 1 3 6 6 C 1.34224 * 117.00300 * 59.99701 * 5 2 1 7 7 O 1.20824 * 120.00249 * 0.02562 * 6 5 2 8 8 C 1.50703 * 119.99994 * 179.97438 * 6 5 2 9 9 H 1.09000 * 109.47216 * 305.00130 * 8 6 5 10 10 O 1.42897 * 109.47209 * 184.99986 * 8 6 5 11 11 C 1.53001 * 109.46987 * 65.00328 * 8 6 5 12 12 N 1.46906 * 109.47233 * 184.99998 * 11 8 6 13 13 C 1.46904 * 110.99893 * 66.04207 * 12 11 8 14 14 C 1.50699 * 109.47050 * 62.47083 * 13 12 11 15 15 H 1.08000 * 120.00314 * 5.14139 * 14 13 12 16 16 C 1.37877 * 119.99836 * 185.14533 * 14 13 12 17 17 N 1.31511 * 120.00254 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99904 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47087 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47253 * 119.99697 * 18 16 14 21 21 H 1.48497 * 109.46781 * 239.99596 * 18 16 14 22 22 C 1.46890 * 111.00094 * 189.99596 * 12 11 8 23 23 C 1.50706 * 109.46940 * 163.92687 * 22 12 11 24 24 C 1.38677 * 120.41818 * 275.51441 * 23 22 12 25 25 C 1.38627 * 118.41822 * 179.78634 * 24 23 22 26 26 C 1.38225 * 119.15893 * 0.51223 * 25 24 23 27 27 N 1.31855 * 120.76630 * 359.72925 * 26 25 24 28 28 C 1.31878 * 121.72785 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.46703 * 300.00205 * 1 2 3 30 30 H 1.09001 * 109.46907 * 59.99985 * 1 2 3 31 31 H 1.08996 * 109.46841 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47040 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47116 * 299.99887 * 3 2 1 34 34 H 1.08998 * 109.46936 * 59.99896 * 3 2 1 35 35 H 1.08996 * 109.47106 * 300.00684 * 4 2 1 36 36 H 1.09001 * 109.47076 * 60.00365 * 4 2 1 37 37 H 1.09003 * 109.47095 * 180.02562 * 4 2 1 38 38 H 0.96703 * 114.00359 * 300.00028 * 10 8 6 39 39 H 1.09001 * 109.47503 * 64.99698 * 11 8 6 40 40 H 1.09007 * 109.46949 * 304.99611 * 11 8 6 41 41 H 1.08992 * 109.47275 * 182.46984 * 13 12 11 42 42 H 1.09005 * 109.47121 * 302.46773 * 13 12 11 43 43 H 0.97000 * 120.00314 * 180.02562 * 17 16 14 44 44 H 1.09003 * 109.47507 * 283.92926 * 22 12 11 45 45 H 1.09003 * 109.47198 * 43.92953 * 22 12 11 46 46 H 1.08004 * 120.78864 * 0.02562 * 24 23 22 47 47 H 1.07999 * 120.41791 * 180.22611 * 25 24 23 48 48 H 1.07998 * 119.61622 * 179.75271 * 26 25 24 49 49 H 1.07998 * 119.62236 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6533 -1.9684 1.3378 7 8 0.9566 -2.5028 0.5078 8 6 2.1182 -2.7437 2.5436 9 1 3.2053 -2.6977 2.6081 10 8 1.7055 -4.1064 2.4218 11 6 1.5061 -2.1365 3.8075 12 7 2.0519 -2.8150 4.9906 13 6 3.4891 -2.5473 5.1349 14 6 3.7065 -1.0707 5.3437 15 1 2.8590 -0.4098 5.4500 16 6 4.9874 -0.5636 5.3989 17 7 6.0194 -1.3683 5.2698 18 14 5.2569 1.2666 5.6584 19 1 3.9430 1.9489 5.7741 20 1 6.0375 1.4804 6.9034 21 1 6.0044 1.8255 4.5034 22 6 1.3199 -2.4280 6.2039 23 6 1.6239 -3.4076 7.3080 24 6 0.9129 -4.5939 7.4096 25 6 1.2299 -5.4670 8.4387 26 6 2.2298 -5.1238 9.3292 27 7 2.8819 -3.9845 9.2048 28 6 2.6111 -3.1327 8.2351 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7217 -1.2490 38 1 0.7476 -4.2232 2.3595 39 1 0.4236 -2.2623 3.7836 40 1 1.7476 -1.0745 3.8540 41 1 3.8767 -3.0964 5.9928 42 1 4.0107 -2.8674 4.2328 43 1 6.9206 -1.0116 5.3090 44 1 1.6274 -1.4281 6.5104 45 1 0.2493 -2.4320 5.9992 46 1 0.1333 -4.8335 6.7016 47 1 0.6992 -6.4015 8.5459 48 1 2.4801 -5.7967 10.1360 49 1 3.1669 -2.2094 8.1650 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253675813.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:48:45 Heat of formation + Delta-G solvation = -97.397009 kcal Electronic energy + Delta-G solvation = -30475.058680 eV Core-core repulsion = 26402.495927 eV Total energy + Delta-G solvation = -4072.562753 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 3.91 seconds Orbital eigenvalues (eV) -40.79116 -39.74264 -37.98297 -36.78041 -35.45535 -34.02579 -32.76439 -32.07560 -31.24391 -29.07494 -27.44848 -27.41473 -27.23326 -25.32351 -23.85905 -23.04955 -22.30304 -21.36883 -19.90539 -19.55102 -17.63535 -16.88831 -16.71853 -16.47089 -15.95984 -15.83098 -15.55067 -15.03092 -14.77555 -14.69094 -14.49870 -14.17064 -13.80410 -13.65673 -13.46594 -13.07098 -12.82237 -12.61471 -12.51036 -12.45420 -12.24569 -11.95568 -11.90381 -11.86689 -11.49485 -11.39798 -11.34407 -11.19064 -11.06165 -10.86588 -10.78414 -10.55959 -10.32380 -10.25042 -10.00197 -9.73800 -9.47805 -9.32485 -8.96262 -8.53368 -8.47775 -7.33417 -6.09407 -4.19802 1.56069 1.73982 2.34113 2.79434 3.23252 3.32580 3.33504 4.19329 4.35199 4.49613 4.68846 4.74071 4.77613 4.88970 4.90636 5.15747 5.19020 5.21460 5.29572 5.37989 5.42410 5.43316 5.46801 5.50453 5.58944 5.65858 5.68550 5.78433 5.80922 5.85038 5.98115 5.99199 6.13355 6.19435 6.24394 6.26409 6.35709 6.43581 6.50638 6.64434 6.80970 7.04363 7.20519 7.45484 7.71970 7.80972 7.86375 8.04836 8.05191 8.17464 8.44770 8.89410 9.48110 10.95478 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010283 B = 0.004110 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.298390 B = 6810.739097 C = 8743.886668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.113 3.887 3 C -0.142 4.142 4 C -0.182 4.182 5 O -0.337 6.337 6 C 0.443 3.557 7 O -0.510 6.510 8 C 0.124 3.876 9 H 0.147 0.853 10 O -0.520 6.520 11 C 0.041 3.959 12 N -0.525 5.525 13 C 0.181 3.819 14 C -0.555 4.555 15 H 0.059 0.941 16 C 0.072 3.928 17 N -0.883 5.883 18 Si 0.884 3.116 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.097 3.903 23 C -0.107 4.107 24 C -0.062 4.062 25 C -0.184 4.184 26 C 0.083 3.917 27 N -0.490 5.490 28 C 0.120 3.880 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.373 0.627 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.034 0.966 42 H 0.037 0.963 43 H 0.263 0.737 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.128 0.872 47 H 0.126 0.874 48 H 0.146 0.854 49 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.883 -0.156 -5.119 12.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.077 3.923 3 C -0.199 4.199 4 C -0.240 4.240 5 O -0.254 6.254 6 C 0.286 3.714 7 O -0.399 6.399 8 C 0.063 3.937 9 H 0.164 0.836 10 O -0.324 6.324 11 C -0.088 4.088 12 N -0.249 5.249 13 C 0.056 3.944 14 C -0.594 4.594 15 H 0.077 0.923 16 C -0.132 4.132 17 N -0.521 5.521 18 Si 0.712 3.288 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.031 4.031 23 C -0.109 4.109 24 C -0.089 4.089 25 C -0.204 4.204 26 C -0.074 4.074 27 N -0.198 5.198 28 C -0.037 4.037 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.220 0.780 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.146 0.854 47 H 0.144 0.856 48 H 0.163 0.837 49 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -10.651 -0.696 -4.834 11.717 hybrid contribution -0.788 1.817 -0.636 2.080 sum -11.439 1.121 -5.470 12.729 Atomic orbital electron populations 1.22474 0.94289 1.04506 1.02542 1.22164 0.94193 0.92503 0.83442 1.21845 1.02571 0.92657 1.02795 1.22483 1.01913 1.03018 0.96538 1.86690 1.69282 1.25146 1.44252 1.25014 0.76988 0.80875 0.88535 1.90529 1.35898 1.69918 1.43596 1.21696 1.03000 0.81084 0.87905 0.83594 1.86707 1.28046 1.22092 1.95535 1.22433 0.97229 0.98855 0.90325 1.62506 1.06648 1.55910 0.99833 1.19882 0.81337 0.94900 0.98267 1.21663 0.92235 0.94001 1.51494 0.92325 1.24903 0.96130 0.97463 0.94714 1.69943 0.98505 1.34701 1.48938 0.86665 0.78323 0.85915 0.77901 1.19796 1.20939 1.20937 1.20855 0.96938 0.96190 0.89116 1.20809 0.96739 0.96399 0.97002 1.21400 0.98460 0.92802 0.96223 1.22011 1.00430 1.00731 0.97255 1.22633 0.92737 0.93924 0.98098 1.67711 1.26250 1.03465 1.22390 1.22928 0.93392 0.98379 0.88995 0.91957 0.91344 0.89940 0.91262 0.90692 0.91327 0.89863 0.91354 0.91875 0.77952 0.92214 0.91277 0.94756 0.94540 0.92722 0.91913 0.91954 0.85402 0.85624 0.83675 0.82166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.12 8.37 37.16 0.31 -1.81 16 2 C 0.11 1.48 1.13 -90.62 -0.10 1.38 16 3 C -0.14 -1.58 8.85 37.16 0.33 -1.25 16 4 C -0.18 -2.26 8.37 37.16 0.31 -1.95 16 5 O -0.34 -5.48 9.86 -39.24 -0.39 -5.86 16 6 C 0.44 7.25 6.58 36.01 0.24 7.49 16 7 O -0.51 -8.50 11.83 -25.46 -0.30 -8.80 16 8 C 0.12 2.13 3.45 -27.88 -0.10 2.04 16 9 H 0.15 2.89 6.29 -51.93 -0.33 2.56 16 10 O -0.52 -8.66 12.94 -55.14 -0.71 -9.37 16 11 C 0.04 0.69 4.38 -3.82 -0.02 0.67 16 12 N -0.53 -9.92 4.60 -237.51 -1.09 -11.02 16 13 C 0.18 4.23 4.72 -4.97 -0.02 4.21 16 14 C -0.56 -13.67 7.33 -34.44 -0.25 -13.92 16 15 H 0.06 1.42 5.96 -52.49 -0.31 1.11 16 16 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 17 N -0.88 -24.63 13.29 55.43 0.74 -23.90 16 18 Si 0.88 20.32 29.54 -169.99 -5.02 15.30 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 22 C 0.10 1.66 4.97 -4.98 -0.02 1.64 16 23 C -0.11 -1.83 4.92 -104.48 -0.51 -2.34 16 24 C -0.06 -0.92 9.88 -39.28 -0.39 -1.31 16 25 C -0.18 -2.51 10.11 -39.44 -0.40 -2.91 16 26 C 0.08 1.25 11.18 -17.55 -0.20 1.05 16 27 N -0.49 -8.96 10.36 -13.25 -0.14 -9.10 16 28 C 0.12 2.26 9.67 -17.55 -0.17 2.09 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 1.09 5.89 -51.93 -0.31 0.79 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 1.18 5.89 -51.93 -0.31 0.87 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.37 4.93 8.79 45.56 0.40 5.33 16 39 H 0.06 0.87 7.86 -51.93 -0.41 0.46 16 40 H 0.07 1.29 6.54 -51.93 -0.34 0.95 16 41 H 0.03 0.89 6.59 -51.93 -0.34 0.55 16 42 H 0.04 0.94 6.27 -51.93 -0.33 0.61 16 43 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.06 1.17 6.09 -51.93 -0.32 0.85 16 45 H 0.06 0.91 7.79 -51.93 -0.40 0.50 16 46 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 47 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 48 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 49 H 0.16 3.21 8.06 -52.49 -0.42 2.79 16 LS Contribution 394.61 15.07 5.95 5.95 Total: -1.00 -29.64 394.61 -8.83 -38.47 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -6.77 Total: 11.47 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -1.09 Total: -3.15 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: -0.49 Total: -44.01 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -1.40 Total: -24.03 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -29.64 -8.83 -38.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253675813.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.924 kcal (2) G-P(sol) polarization free energy of solvation -29.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.91 seconds