Wall clock time and date at job start Sat Apr 11 2020 04:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47076 * 2 1 4 4 H 1.08994 * 109.47024 * 54.80737 * 3 2 1 5 5 C 1.50699 * 109.46966 * 174.80733 * 3 2 1 6 6 H 1.07999 * 119.99666 * 119.99862 * 5 3 2 7 7 C 1.37873 * 120.00353 * 300.00153 * 5 3 2 8 8 N 1.31514 * 120.00297 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 119.99731 * 359.97438 * 7 5 3 10 10 H 1.48499 * 109.47342 * 90.00238 * 9 7 5 11 11 H 1.48505 * 109.47131 * 209.99983 * 9 7 5 12 12 H 1.48497 * 109.47318 * 329.99847 * 9 7 5 13 13 N 1.46899 * 109.46711 * 294.80914 * 3 2 1 14 14 C 1.46905 * 110.99676 * 153.67656 * 13 3 2 15 15 C 1.50705 * 109.47181 * 176.21612 * 14 13 3 16 16 C 1.34438 * 125.71784 * 90.29583 * 15 14 13 17 17 C 1.41433 * 106.92119 * 180.15142 * 16 15 14 18 18 C 1.35360 * 106.77247 * 359.57808 * 17 16 15 19 19 N 1.39244 * 125.85762 * 180.24551 * 18 17 16 20 20 C 1.46854 * 110.99616 * 304.20229 * 19 18 17 21 21 C 1.53041 * 109.52119 * 174.16612 * 20 19 18 22 22 C 1.53116 * 109.27907 * 59.17833 * 21 20 19 23 23 C 1.53123 * 109.16165 * 302.34490 * 22 21 20 24 24 H 1.09000 * 109.50215 * 297.71410 * 23 22 21 25 25 C 1.50695 * 109.50237 * 177.59683 * 23 22 21 26 26 O 1.20829 * 119.99889 * 240.19574 * 25 23 22 27 27 O 1.34228 * 120.00027 * 60.19996 * 25 23 22 28 28 C 1.46847 * 111.00034 * 179.97438 * 19 18 17 29 29 O 1.34372 * 108.28036 * 0.25589 * 18 17 16 30 30 H 1.08998 * 109.47050 * 186.16855 * 1 2 3 31 31 H 1.08996 * 109.46916 * 306.17208 * 1 2 3 32 32 H 1.08997 * 109.46657 * 66.17125 * 1 2 3 33 33 H 1.09000 * 109.46950 * 239.99756 * 2 1 3 34 34 H 1.09001 * 109.46958 * 120.00051 * 2 1 3 35 35 H 0.97000 * 120.00265 * 179.97438 * 8 7 5 36 36 H 1.00894 * 111.00447 * 29.71631 * 13 3 2 37 37 H 1.09000 * 109.47257 * 56.21192 * 14 13 3 38 38 H 1.08999 * 109.46777 * 296.21491 * 14 13 3 39 39 H 1.07994 * 126.54586 * 359.97438 * 16 15 14 40 40 H 1.07994 * 126.61032 * 179.83030 * 17 16 15 41 41 H 1.08996 * 109.46120 * 294.17592 * 20 19 18 42 42 H 1.08997 * 109.46460 * 54.14649 * 20 19 18 43 43 H 1.08996 * 109.49934 * 299.23696 * 21 20 19 44 44 H 1.09001 * 109.53290 * 179.13935 * 21 20 19 45 45 H 1.09001 * 109.52252 * 182.44131 * 22 21 20 46 46 H 1.09001 * 109.52599 * 62.25247 * 22 21 20 47 47 H 0.96699 * 117.00263 * 179.97438 * 27 25 23 48 48 H 1.08998 * 109.46096 * 305.85279 * 28 19 18 49 49 H 1.09008 * 109.46063 * 65.81844 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6028 1.9825 0.8398 5 6 3.5415 1.4444 0.1286 6 1 4.1492 1.8881 -0.6462 7 6 4.1395 0.8798 1.2352 8 7 5.4498 0.8810 1.3472 9 14 3.0882 0.1129 2.5755 10 1 2.8673 -1.3235 2.2703 11 1 3.7820 0.2403 3.8824 12 1 1.7799 0.8124 2.6394 13 7 1.6553 2.0978 -1.2572 14 6 1.5454 3.5520 -1.0806 15 6 1.2413 4.1977 -2.4080 16 6 0.0138 4.4346 -2.9026 17 6 0.1900 5.0465 -4.1655 18 6 1.5245 5.1559 -4.3638 19 7 2.1401 5.7086 -5.4838 20 6 1.6911 5.0428 -6.7133 21 6 2.2731 5.7675 -7.9291 22 6 3.8019 5.7482 -7.8451 23 6 4.2414 6.4041 -6.5332 24 1 3.9215 7.4461 -6.5222 25 6 5.7422 6.3365 -6.4150 26 8 6.2494 5.7537 -5.4860 27 8 6.5155 6.9237 -7.3418 28 6 3.6024 5.6615 -5.3576 29 8 2.1533 4.6394 -3.2944 30 1 -0.3633 -1.0217 0.1104 31 1 -0.3633 0.6065 0.8296 32 1 -0.3632 0.4152 -0.9401 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 5.8705 0.4840 2.1259 36 1 0.7961 1.7114 -1.6182 37 1 2.4862 3.9432 -0.6933 38 1 0.7429 3.7729 -0.3768 39 1 -0.9272 4.1997 -2.4277 40 1 -0.5899 5.3684 -4.8396 41 1 2.0313 4.0073 -6.7106 42 1 0.6025 5.0671 -6.7628 43 1 1.9222 6.7993 -7.9401 44 1 1.9524 5.2643 -8.8413 45 1 4.2199 6.3008 -8.6866 46 1 4.1553 4.7175 -7.8734 47 1 7.4727 6.8539 -7.2232 48 1 3.9016 6.1351 -4.4226 49 1 3.9339 4.6230 -5.3610 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589463513.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:51 Heat of formation + Delta-G solvation = -67.015976 kcal Electronic energy + Delta-G solvation = -29471.944905 eV Core-core repulsion = 25400.699573 eV Total energy + Delta-G solvation = -4071.245332 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.40157 -40.79748 -38.86224 -36.76776 -36.36967 -34.18384 -33.20165 -32.28073 -31.73843 -31.50480 -28.74072 -27.00227 -25.28803 -25.14920 -23.35520 -22.33852 -22.22274 -20.99176 -20.34174 -19.91606 -19.71373 -18.40979 -17.85445 -16.75466 -16.54891 -16.08797 -16.02386 -15.52180 -15.13225 -14.96601 -14.87075 -14.28043 -14.00119 -13.83412 -13.80448 -13.49238 -13.22827 -13.00621 -12.94230 -12.66878 -12.52302 -12.45382 -12.02534 -11.93262 -11.80349 -11.77120 -11.43547 -11.30598 -11.20785 -11.00273 -10.90299 -10.59830 -10.50724 -10.30137 -10.06206 -10.00187 -9.51518 -9.40825 -9.20324 -8.51754 -7.63665 -7.40247 -6.01908 -3.99667 1.90215 1.95257 2.54836 2.80376 2.96376 3.26169 3.35815 3.38774 3.81158 4.15214 4.32069 4.41316 4.46293 4.67324 4.89481 5.00616 5.03271 5.11606 5.20779 5.24596 5.28513 5.29554 5.33768 5.39876 5.49601 5.62558 5.63973 5.71009 5.75667 5.81207 5.82097 5.90248 5.93746 5.96635 6.07458 6.23156 6.26941 6.43717 6.50231 6.57613 6.66623 6.74991 6.77404 6.99080 7.13206 7.52344 7.63440 7.70477 7.88336 8.20796 8.74875 9.11698 9.60030 11.11478 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013019 B = 0.002837 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.245060 B = 9868.530857 C =11482.887845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.136 4.136 3 C 0.191 3.809 4 H 0.004 0.996 5 C -0.499 4.499 6 H 0.082 0.918 7 C 0.067 3.933 8 N -0.899 5.899 9 Si 0.882 3.118 10 H -0.279 1.279 11 H -0.297 1.297 12 H -0.267 1.267 13 N -0.670 5.670 14 C 0.139 3.861 15 C 0.019 3.981 16 C -0.205 4.205 17 C -0.219 4.219 18 C 0.157 3.843 19 N -0.436 5.436 20 C 0.048 3.952 21 C -0.114 4.114 22 C -0.116 4.116 23 C -0.075 4.075 24 H 0.120 0.880 25 C 0.481 3.519 26 O -0.501 6.501 27 O -0.517 6.517 28 C 0.061 3.939 29 O -0.179 6.179 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.263 0.737 36 H 0.323 0.677 37 H 0.096 0.904 38 H 0.052 0.948 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.051 0.949 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.070 0.930 47 H 0.411 0.589 48 H 0.097 0.903 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.633 11.806 -19.472 24.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.174 4.174 3 C 0.083 3.917 4 H 0.021 0.979 5 C -0.537 4.537 6 H 0.100 0.900 7 C -0.134 4.134 8 N -0.538 5.538 9 Si 0.712 3.288 10 H -0.206 1.206 11 H -0.225 1.225 12 H -0.193 1.193 13 N -0.302 5.302 14 C 0.010 3.990 15 C -0.033 4.033 16 C -0.226 4.226 17 C -0.241 4.241 18 C 0.011 3.989 19 N -0.158 5.158 20 C -0.077 4.077 21 C -0.152 4.152 22 C -0.153 4.153 23 C -0.095 4.095 24 H 0.138 0.862 25 C 0.322 3.678 26 O -0.388 6.388 27 O -0.329 6.329 28 C -0.066 4.066 29 O -0.074 6.074 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.140 0.860 37 H 0.114 0.886 38 H 0.070 0.930 39 H 0.162 0.838 40 H 0.162 0.838 41 H 0.069 0.931 42 H 0.108 0.892 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.103 0.897 46 H 0.089 0.911 47 H 0.271 0.729 48 H 0.115 0.885 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.896 12.106 -19.378 24.175 hybrid contribution -0.474 -1.189 1.419 1.911 sum -8.370 10.917 -17.959 22.622 Atomic orbital electron populations 1.21922 0.98113 1.00681 1.00779 1.22126 0.93008 1.00264 1.01959 1.19639 0.97042 0.89309 0.85684 0.97881 1.21050 0.88985 1.37553 1.06152 0.90027 1.24965 0.94757 0.95962 0.97734 1.69892 1.08694 1.45648 1.29547 0.86951 0.80672 0.79806 0.81339 1.20576 1.22463 1.19256 1.60454 1.36967 1.00789 1.32038 1.20322 1.02493 0.89428 0.86758 1.22494 0.86269 1.00876 0.93649 1.21364 0.97723 1.06803 0.96702 1.21052 0.93487 1.10024 0.99568 1.20346 0.90568 1.00333 0.87635 1.59769 1.07498 1.49388 0.99157 1.22477 1.01387 0.96397 0.87440 1.21612 0.94244 1.02229 0.97081 1.21640 0.96770 1.01484 0.95438 1.20982 0.86711 1.04132 0.97639 0.86168 1.23269 0.90694 0.74812 0.79021 1.90829 1.75639 1.39818 1.32485 1.84491 1.24439 1.72201 1.51781 1.21963 0.85048 1.01221 0.98331 1.84109 1.37591 1.59929 1.25741 0.93534 0.93497 0.93095 0.91253 0.92657 0.92704 0.85950 0.88603 0.93006 0.83750 0.83849 0.93110 0.89151 0.90193 0.89916 0.89740 0.91132 0.72948 0.88484 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.63 37.16 0.36 -2.29 16 2 C -0.14 -2.89 5.01 -26.73 -0.13 -3.03 16 3 C 0.19 4.47 1.62 -68.86 -0.11 4.36 16 4 H 0.00 0.09 6.88 -51.93 -0.36 -0.27 16 5 C -0.50 -14.26 9.20 -34.44 -0.32 -14.58 16 6 H 0.08 2.62 8.06 -52.49 -0.42 2.20 16 7 C 0.07 1.96 5.45 -17.82 -0.10 1.86 16 8 N -0.90 -28.02 13.96 55.43 0.77 -27.25 16 9 Si 0.88 21.91 24.41 -169.99 -4.15 17.76 16 10 H -0.28 -6.74 6.83 56.52 0.39 -6.35 16 11 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 12 H -0.27 -6.30 6.53 56.52 0.37 -5.93 16 13 N -0.67 -13.85 6.27 -109.22 -0.68 -14.53 16 14 C 0.14 2.61 5.98 -4.97 -0.03 2.58 16 15 C 0.02 0.32 6.87 -35.65 -0.24 0.08 16 16 C -0.21 -3.01 10.80 -39.71 -0.43 -3.44 16 17 C -0.22 -2.98 10.16 -39.39 -0.40 -3.38 16 18 C 0.16 2.34 6.57 -15.21 -0.10 2.24 16 19 N -0.44 -5.24 4.73 -173.76 -0.82 -6.06 16 20 C 0.05 0.44 5.32 -3.83 -0.02 0.42 16 21 C -0.11 -0.72 6.09 -26.65 -0.16 -0.88 16 22 C -0.12 -0.82 5.22 -26.61 -0.14 -0.96 16 23 C -0.08 -0.69 2.79 -91.70 -0.26 -0.95 16 24 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 25 C 0.48 5.14 7.63 36.00 0.27 5.41 16 26 O -0.50 -7.60 16.74 -18.75 -0.31 -7.92 16 27 O -0.52 -3.89 13.36 -39.25 -0.52 -4.41 16 28 C 0.06 0.77 3.50 -3.84 -0.01 0.76 16 29 O -0.18 -3.26 9.81 4.61 0.05 -3.22 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.76 6.65 -51.93 -0.35 0.41 16 33 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.06 1.26 3.22 -51.93 -0.17 1.10 16 35 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 36 H 0.32 5.86 6.60 -39.30 -0.26 5.61 16 37 H 0.10 2.02 7.99 -51.93 -0.41 1.60 16 38 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 39 H 0.14 1.79 8.06 -52.49 -0.42 1.36 16 40 H 0.14 1.57 7.84 -52.49 -0.41 1.16 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.09 0.73 7.37 -51.93 -0.38 0.35 16 43 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.41 1.58 9.10 45.56 0.41 2.00 16 48 H 0.10 1.41 7.93 -51.93 -0.41 1.00 16 49 H 0.06 0.94 8.08 -51.92 -0.42 0.52 16 LS Contribution 389.06 15.07 5.86 5.86 Total: -1.00 -34.92 389.06 -8.65 -43.57 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -7.01 Total: 7.98 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -1.82 Total: -11.79 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: -0.73 Total: -47.84 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.79 Total: -15.55 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.15 Total: 17.76 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.92 -8.65 -43.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589463513.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.447 kcal (2) G-P(sol) polarization free energy of solvation -34.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds