Wall clock time and date at job start Sat Apr 11 2020 04:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35910 * 116.99637 * 2 1 4 4 C 1.38732 * 119.95736 * 359.97438 * 3 2 1 5 5 C 1.38728 * 120.18889 * 180.02562 * 4 3 2 6 6 O 1.35912 * 119.95440 * 179.97438 * 5 4 3 7 7 C 1.42908 * 116.99564 * 0.02562 * 6 5 4 8 8 C 1.38508 * 120.09652 * 359.97343 * 5 4 3 9 9 C 1.39522 * 119.90333 * 0.02562 * 8 5 4 10 10 C 1.47869 * 120.09232 * 179.97438 * 9 8 5 11 11 O 1.21556 * 119.99808 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00129 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00423 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47361 * 180.02562 * 13 12 10 15 15 H 1.08994 * 109.47294 * 64.99703 * 14 13 12 16 16 N 1.46505 * 109.47024 * 304.99744 * 14 13 12 17 17 C 1.36931 * 119.99788 * 155.00126 * 16 14 13 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 14 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 14 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48508 * 109.46872 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 119.99997 * 21 19 17 24 24 H 1.48498 * 109.47018 * 240.00044 * 21 19 17 25 25 C 1.53006 * 109.47104 * 185.00342 * 14 13 12 26 26 C 1.52995 * 109.47104 * 179.97438 * 25 14 13 27 27 C 1.53012 * 109.46635 * 299.99583 * 25 14 13 28 28 C 1.38517 * 119.95436 * 180.25340 * 3 2 1 29 29 H 1.09001 * 109.47410 * 300.00187 * 1 2 3 30 30 H 1.08994 * 109.47123 * 59.99967 * 1 2 3 31 31 H 1.08997 * 109.46998 * 180.02562 * 1 2 3 32 32 H 1.07997 * 119.90336 * 359.97438 * 4 3 2 33 33 H 1.08999 * 109.47274 * 300.00481 * 7 6 5 34 34 H 1.08996 * 109.46453 * 60.00591 * 7 6 5 35 35 H 1.09003 * 109.46909 * 180.02562 * 7 6 5 36 36 H 1.07999 * 120.05085 * 179.97438 * 8 5 4 37 37 H 0.96998 * 119.99979 * 359.97438 * 12 10 9 38 38 H 1.09005 * 109.46957 * 59.99705 * 13 12 10 39 39 H 1.09002 * 109.46680 * 300.00186 * 13 12 10 40 40 H 0.97000 * 119.99792 * 334.99921 * 16 14 13 41 41 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 42 42 H 1.08994 * 109.47567 * 59.99528 * 25 14 13 43 43 H 1.09002 * 109.47452 * 59.99616 * 26 25 14 44 44 H 1.09001 * 109.46956 * 179.97438 * 26 25 14 45 45 H 1.08998 * 109.47373 * 299.99661 * 26 25 14 46 46 H 1.08995 * 109.46796 * 60.00032 * 27 25 14 47 47 H 1.08999 * 109.46647 * 180.02562 * 27 25 14 48 48 H 1.08994 * 109.47099 * 300.00232 * 27 25 14 49 49 H 1.08003 * 120.04380 * 0.02628 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2894 2.3739 -0.0005 5 6 1.9141 3.6126 -0.0011 6 8 1.1683 4.7488 -0.0021 7 6 -0.2522 4.5923 -0.0021 8 6 3.2969 3.6930 -0.0005 9 6 4.0616 2.5260 0.0000 10 6 5.5380 2.6071 0.0001 11 8 6.0871 3.6916 0.0001 12 7 6.2749 1.4787 0.0001 13 6 7.7377 1.5589 0.0007 14 6 8.3260 0.1466 -0.0001 15 1 8.0651 -0.3552 -0.9318 16 7 7.7820 -0.6096 1.1307 17 6 7.7284 -1.9768 1.0776 18 1 8.0874 -2.4978 0.2023 19 6 7.2183 -2.6936 2.1514 20 7 6.7812 -2.0587 3.2183 21 14 7.1522 -4.5591 2.0821 22 1 7.6996 -5.0259 0.7830 23 1 7.9603 -5.1246 3.1922 24 1 5.7436 -5.0099 2.2158 25 6 9.8486 0.2283 0.1263 26 6 10.4368 -1.1841 0.1262 27 6 10.4167 1.0180 -1.0547 28 6 3.4292 1.2825 -0.0053 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 0.2110 2.3147 -0.0014 33 1 -0.5570 4.0409 -0.8915 34 1 -0.5570 4.0427 0.8885 35 1 -0.7258 5.5741 -0.0034 36 1 3.7825 4.6577 -0.0014 37 1 5.8367 0.6133 0.0004 38 1 8.0720 2.0917 0.8909 39 1 8.0726 2.0921 -0.8891 40 1 7.4599 -0.1417 1.9170 41 1 6.4244 -2.5596 3.9685 42 1 10.1095 0.7300 1.0581 43 1 10.1760 -1.6863 -0.8054 44 1 11.5216 -1.1259 0.2158 45 1 10.0321 -1.7463 0.9677 46 1 9.9975 2.0241 -1.0542 47 1 11.5014 1.0758 -0.9649 48 1 10.1558 0.5162 -1.9864 49 1 4.0175 0.3767 -0.0099 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753844607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:48 Heat of formation + Delta-G solvation = -78.455185 kcal Electronic energy + Delta-G solvation = -29518.340493 eV Core-core repulsion = 25446.599120 eV Total energy + Delta-G solvation = -4071.741374 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.77214 -39.34907 -38.97355 -37.30318 -36.26614 -33.91799 -33.10062 -30.93532 -30.44212 -30.18596 -28.35356 -27.83180 -26.73911 -26.08693 -24.20222 -23.11442 -22.45849 -21.58592 -20.23498 -19.47913 -18.76007 -17.23486 -17.18225 -16.39376 -16.21561 -16.16886 -16.05111 -15.67133 -15.28319 -15.16086 -14.88490 -14.60941 -14.01023 -13.80937 -13.50372 -13.34201 -13.23453 -12.89323 -12.70871 -12.55034 -12.33282 -12.13494 -12.00376 -11.81088 -11.60602 -11.55341 -11.31701 -11.04682 -10.95088 -10.81111 -10.66684 -10.62787 -10.27788 -10.06640 -9.94547 -9.69842 -9.52361 -8.91891 -8.89193 -8.56520 -8.11362 -7.01396 -5.80110 -3.09385 0.78194 1.37411 2.92435 2.99189 3.09450 3.40513 3.47085 3.48993 3.62249 3.88751 4.55101 4.58749 4.64165 4.77220 4.84187 4.92634 4.96482 5.01874 5.15016 5.18709 5.26540 5.28426 5.36302 5.39963 5.51876 5.56351 5.65564 5.77950 5.92820 6.02532 6.05480 6.08794 6.19762 6.26493 6.30377 6.38755 6.40107 6.47418 6.55827 6.65104 6.69018 6.92816 6.97855 7.09340 7.31443 7.31707 7.69026 7.92110 8.36805 8.52572 9.49148 10.03719 10.39733 11.41575 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010301 B = 0.003458 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.529061 B = 8095.857727 C =10313.372502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.307 6.307 3 C 0.160 3.840 4 C -0.278 4.278 5 C 0.153 3.847 6 O -0.312 6.312 7 C 0.027 3.973 8 C -0.131 4.131 9 C -0.050 4.050 10 C 0.556 3.444 11 O -0.545 6.545 12 N -0.702 5.702 13 C 0.113 3.887 14 C 0.169 3.831 15 H 0.054 0.946 16 N -0.722 5.722 17 C -0.237 4.237 18 H 0.073 0.927 19 C -0.009 4.009 20 N -0.927 5.927 21 Si 0.901 3.099 22 H -0.280 1.280 23 H -0.293 1.293 24 H -0.292 1.292 25 C -0.109 4.109 26 C -0.139 4.139 27 C -0.149 4.149 28 C -0.147 4.147 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.102 0.898 32 H 0.136 0.864 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.101 0.899 36 H 0.145 0.855 37 H 0.411 0.589 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.385 0.615 41 H 0.254 0.746 42 H 0.063 0.937 43 H 0.040 0.960 44 H 0.031 0.969 45 H 0.086 0.914 46 H 0.051 0.949 47 H 0.045 0.955 48 H 0.049 0.951 49 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.466 9.069 -8.489 17.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.219 6.219 3 C 0.115 3.885 4 C -0.298 4.298 5 C 0.108 3.892 6 O -0.225 6.225 7 C -0.068 4.068 8 C -0.150 4.150 9 C -0.054 4.054 10 C 0.342 3.658 11 O -0.424 6.424 12 N -0.354 5.354 13 C -0.012 4.012 14 C 0.059 3.941 15 H 0.072 0.928 16 N -0.363 5.363 17 C -0.368 4.368 18 H 0.091 0.909 19 C -0.206 4.206 20 N -0.575 5.575 21 Si 0.732 3.268 22 H -0.205 1.205 23 H -0.220 1.220 24 H -0.219 1.219 25 C -0.131 4.131 26 C -0.196 4.196 27 C -0.207 4.207 28 C -0.167 4.167 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.121 0.879 32 H 0.154 0.846 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.119 0.881 36 H 0.163 0.837 37 H 0.249 0.751 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.219 0.781 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.050 0.950 45 H 0.105 0.895 46 H 0.070 0.930 47 H 0.064 0.936 48 H 0.068 0.932 49 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.923 9.618 -8.528 17.532 hybrid contribution -0.896 -1.456 0.425 1.762 sum -12.819 8.162 -8.103 17.222 Atomic orbital electron populations 1.23076 0.78513 1.04216 1.01043 1.86181 1.21255 1.26249 1.88247 1.18535 0.91765 0.83785 0.94460 1.21367 1.00534 0.91963 1.15908 1.18504 0.90809 0.84577 0.95328 1.86112 1.18863 1.28920 1.88604 1.23068 0.78613 1.03898 1.01266 1.20322 0.89838 0.99454 1.05409 1.19506 0.93348 0.92305 1.00199 1.18021 0.86129 0.84510 0.77132 1.90745 1.72978 1.27926 1.50746 1.45932 1.07677 1.09032 1.72762 1.21801 0.78658 0.98953 1.01750 1.20559 0.91226 0.89282 0.93068 0.92784 1.42480 1.73577 1.03630 1.16632 1.19231 1.34303 0.82536 1.00718 0.90860 1.24720 1.01735 0.97562 0.96576 1.69671 1.47312 1.34078 1.06430 0.86218 0.77217 0.86146 0.77214 1.20548 1.21990 1.21946 1.21727 0.97372 0.96484 0.97505 1.21818 0.97972 0.96753 1.03095 1.21946 1.00082 0.99872 0.98825 1.20617 0.91748 0.98195 1.06131 0.92694 0.92801 0.87948 0.84639 0.92718 0.92643 0.88079 0.83700 0.75054 0.91614 0.91318 0.78055 0.93560 0.91855 0.94070 0.95018 0.89487 0.92992 0.93576 0.93188 0.83807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -4.06 10.49 -19.46 -0.20 -4.27 16 3 C 0.16 2.21 6.68 -39.30 -0.26 1.95 16 4 C -0.28 -3.30 8.02 -39.22 -0.31 -3.61 16 5 C 0.15 2.00 6.68 -39.30 -0.26 1.74 16 6 O -0.31 -3.61 10.49 -19.46 -0.20 -3.81 16 7 C 0.03 0.19 9.81 101.05 0.99 1.18 16 8 C -0.13 -1.94 9.53 -39.00 -0.37 -2.31 16 9 C -0.05 -0.80 5.87 -105.00 -0.62 -1.41 16 10 C 0.56 9.87 7.77 -12.32 -0.10 9.77 16 11 O -0.54 -10.93 16.34 5.32 0.09 -10.84 16 12 N -0.70 -12.13 5.34 -61.24 -0.33 -12.46 16 13 C 0.11 1.93 4.73 -4.04 -0.02 1.91 16 14 C 0.17 3.10 2.18 -67.93 -0.15 2.95 16 15 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 16 N -0.72 -16.27 4.44 -53.42 -0.24 -16.51 16 17 C -0.24 -5.94 7.57 -15.06 -0.11 -6.05 16 18 H 0.07 1.81 7.39 -52.49 -0.39 1.42 16 19 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 20 N -0.93 -26.57 13.06 55.49 0.72 -25.85 16 21 Si 0.90 21.45 29.55 -169.99 -5.02 16.42 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 C -0.11 -1.85 2.69 -90.61 -0.24 -2.10 16 26 C -0.14 -2.49 8.26 37.16 0.31 -2.18 16 27 C -0.15 -2.10 8.84 37.16 0.33 -1.77 16 28 C -0.15 -2.24 9.48 -39.01 -0.37 -2.61 16 29 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 30 H 0.05 0.36 7.65 -51.93 -0.40 -0.04 16 31 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.14 1.19 4.49 -52.49 -0.24 0.95 16 33 H 0.05 0.32 7.65 -51.93 -0.40 -0.08 16 34 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 35 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.15 2.18 7.64 -52.49 -0.40 1.77 16 37 H 0.41 7.18 6.17 -40.82 -0.25 6.92 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.07 1.10 6.71 -51.93 -0.35 0.75 16 40 H 0.39 9.58 7.80 -40.82 -0.32 9.26 16 41 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.09 1.85 6.01 -51.93 -0.31 1.53 16 46 H 0.05 0.69 6.54 -51.93 -0.34 0.35 16 47 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.14 2.24 6.40 -52.48 -0.34 1.90 16 LS Contribution 395.75 15.07 5.96 5.96 Total: -1.00 -30.82 395.75 -6.97 -37.79 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: -7.46 Total: 15.25 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -0.30 Total: -1.69 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.16 Total: -54.82 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.32 Total: -18.92 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.82 -6.97 -37.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753844607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.664 kcal (2) G-P(sol) polarization free energy of solvation -30.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds