Wall clock time and date at job start Sat Apr 11 2020 04:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35910 * 116.99637 * 2 1 4 4 C 1.38732 * 119.95736 * 359.97438 * 3 2 1 5 5 C 1.38728 * 120.18889 * 180.02562 * 4 3 2 6 6 O 1.35912 * 119.95440 * 179.97438 * 5 4 3 7 7 C 1.42908 * 116.99564 * 0.02562 * 6 5 4 8 8 C 1.38508 * 120.09652 * 359.97343 * 5 4 3 9 9 C 1.39522 * 119.90333 * 0.02562 * 8 5 4 10 10 C 1.47869 * 120.09232 * 179.97438 * 9 8 5 11 11 O 1.21556 * 119.99808 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00129 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00423 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47361 * 180.02562 * 13 12 10 15 15 H 1.08994 * 109.47294 * 64.99703 * 14 13 12 16 16 N 1.46505 * 109.47024 * 304.99744 * 14 13 12 17 17 C 1.36931 * 119.99788 * 155.00126 * 16 14 13 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 14 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 14 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48508 * 109.46872 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 119.99997 * 21 19 17 24 24 H 1.48498 * 109.47018 * 240.00044 * 21 19 17 25 25 C 1.53006 * 109.47104 * 185.00342 * 14 13 12 26 26 C 1.52995 * 109.47104 * 179.97438 * 25 14 13 27 27 C 1.53012 * 109.46635 * 299.99583 * 25 14 13 28 28 C 1.38517 * 119.95436 * 180.25340 * 3 2 1 29 29 H 1.09001 * 109.47410 * 300.00187 * 1 2 3 30 30 H 1.08994 * 109.47123 * 59.99967 * 1 2 3 31 31 H 1.08997 * 109.46998 * 180.02562 * 1 2 3 32 32 H 1.07997 * 119.90336 * 359.97438 * 4 3 2 33 33 H 1.08999 * 109.47274 * 300.00481 * 7 6 5 34 34 H 1.08996 * 109.46453 * 60.00591 * 7 6 5 35 35 H 1.09003 * 109.46909 * 180.02562 * 7 6 5 36 36 H 1.07999 * 120.05085 * 179.97438 * 8 5 4 37 37 H 0.96998 * 119.99979 * 359.97438 * 12 10 9 38 38 H 1.09005 * 109.46957 * 59.99705 * 13 12 10 39 39 H 1.09002 * 109.46680 * 300.00186 * 13 12 10 40 40 H 0.97000 * 119.99792 * 334.99921 * 16 14 13 41 41 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 42 42 H 1.08994 * 109.47567 * 59.99528 * 25 14 13 43 43 H 1.09002 * 109.47452 * 59.99616 * 26 25 14 44 44 H 1.09001 * 109.46956 * 179.97438 * 26 25 14 45 45 H 1.08998 * 109.47373 * 299.99661 * 26 25 14 46 46 H 1.08995 * 109.46796 * 60.00032 * 27 25 14 47 47 H 1.08999 * 109.46647 * 180.02562 * 27 25 14 48 48 H 1.08994 * 109.47099 * 300.00232 * 27 25 14 49 49 H 1.08003 * 120.04380 * 0.02628 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2894 2.3739 -0.0005 5 6 1.9141 3.6126 -0.0011 6 8 1.1683 4.7488 -0.0021 7 6 -0.2522 4.5923 -0.0021 8 6 3.2969 3.6930 -0.0005 9 6 4.0616 2.5260 0.0000 10 6 5.5380 2.6071 0.0001 11 8 6.0871 3.6916 0.0001 12 7 6.2749 1.4787 0.0001 13 6 7.7377 1.5589 0.0007 14 6 8.3260 0.1466 -0.0001 15 1 8.0651 -0.3552 -0.9318 16 7 7.7820 -0.6096 1.1307 17 6 7.7284 -1.9768 1.0776 18 1 8.0874 -2.4978 0.2023 19 6 7.2183 -2.6936 2.1514 20 7 6.7812 -2.0587 3.2183 21 14 7.1522 -4.5591 2.0821 22 1 7.6996 -5.0259 0.7830 23 1 7.9603 -5.1246 3.1922 24 1 5.7436 -5.0099 2.2158 25 6 9.8486 0.2283 0.1263 26 6 10.4368 -1.1841 0.1262 27 6 10.4167 1.0180 -1.0547 28 6 3.4292 1.2825 -0.0053 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 0.2110 2.3147 -0.0014 33 1 -0.5570 4.0409 -0.8915 34 1 -0.5570 4.0427 0.8885 35 1 -0.7258 5.5741 -0.0034 36 1 3.7825 4.6577 -0.0014 37 1 5.8367 0.6133 0.0004 38 1 8.0720 2.0917 0.8909 39 1 8.0726 2.0921 -0.8891 40 1 7.4599 -0.1417 1.9170 41 1 6.4244 -2.5596 3.9685 42 1 10.1095 0.7300 1.0581 43 1 10.1760 -1.6863 -0.8054 44 1 11.5216 -1.1259 0.2158 45 1 10.0321 -1.7463 0.9677 46 1 9.9975 2.0241 -1.0542 47 1 11.5014 1.0758 -0.9649 48 1 10.1558 0.5162 -1.9864 49 1 4.0175 0.3767 -0.0099 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753844607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:47 Heat of formation + Delta-G solvation = -99.168004 kcal Electronic energy + Delta-G solvation = -29519.238669 eV Core-core repulsion = 25446.599120 eV Total energy + Delta-G solvation = -4072.639549 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.82118 -40.66781 -39.86214 -38.80016 -37.35737 -35.38274 -34.89977 -32.32458 -31.72291 -31.39573 -29.53892 -28.83790 -27.51078 -27.41143 -25.83668 -24.54829 -23.55827 -22.95607 -21.51234 -20.80376 -20.00845 -19.05233 -18.12597 -17.60332 -17.41971 -17.12752 -17.02889 -16.88294 -16.43199 -16.40916 -16.16069 -15.69580 -15.62421 -15.33831 -14.97825 -14.89099 -14.30143 -14.18985 -13.86566 -13.53204 -13.44324 -13.41586 -13.20666 -12.88843 -12.86630 -12.69949 -12.50177 -12.44641 -12.33522 -12.25842 -12.21767 -11.95123 -11.75425 -11.60829 -11.43985 -11.26812 -11.15446 -10.80477 -10.13173 -9.80200 -9.16044 -8.93995 -7.85223 -5.12342 -0.35145 0.30007 1.50053 1.52198 1.59882 1.73018 1.93814 2.24462 2.42257 2.61441 2.69971 3.47576 3.56048 3.78119 3.86623 3.90080 3.94946 4.03745 4.14177 4.28817 4.31192 4.32892 4.36451 4.37737 4.39029 4.40744 4.47229 4.66543 4.71660 4.73332 4.77989 4.94705 4.98658 5.01211 5.03468 5.08389 5.16621 5.17848 5.28388 5.30512 5.35159 5.50866 5.62851 5.67633 5.79737 6.11640 6.34539 6.40287 6.49718 7.10870 7.42683 8.13606 8.38952 9.37763 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010301 B = 0.003458 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.529061 B = 8095.857727 C =10313.372502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.330 6.330 3 C 0.158 3.842 4 C -0.262 4.262 5 C 0.160 3.840 6 O -0.325 6.325 7 C 0.013 3.987 8 C -0.146 4.146 9 C -0.063 4.063 10 C 0.555 3.445 11 O -0.573 6.573 12 N -0.702 5.702 13 C 0.120 3.880 14 C 0.172 3.828 15 H 0.058 0.942 16 N -0.728 5.728 17 C -0.213 4.213 18 H 0.080 0.920 19 C -0.071 4.071 20 N -0.966 5.966 21 Si 0.956 3.044 22 H -0.266 1.266 23 H -0.302 1.302 24 H -0.299 1.299 25 C -0.106 4.106 26 C -0.134 4.134 27 C -0.141 4.141 28 C -0.164 4.164 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.172 0.828 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.124 0.876 36 H 0.136 0.864 37 H 0.410 0.590 38 H 0.053 0.947 39 H 0.087 0.913 40 H 0.372 0.628 41 H 0.246 0.754 42 H 0.051 0.949 43 H 0.046 0.954 44 H 0.051 0.949 45 H 0.049 0.951 46 H 0.058 0.942 47 H 0.061 0.939 48 H 0.059 0.941 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.883 9.316 -10.197 19.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.243 6.243 3 C 0.112 3.888 4 C -0.281 4.281 5 C 0.114 3.886 6 O -0.239 6.239 7 C -0.081 4.081 8 C -0.165 4.165 9 C -0.066 4.066 10 C 0.343 3.657 11 O -0.455 6.455 12 N -0.352 5.352 13 C -0.005 4.005 14 C 0.063 3.937 15 H 0.076 0.924 16 N -0.368 5.368 17 C -0.345 4.345 18 H 0.098 0.902 19 C -0.263 4.263 20 N -0.618 5.618 21 Si 0.787 3.213 22 H -0.190 1.190 23 H -0.230 1.230 24 H -0.227 1.227 25 C -0.127 4.127 26 C -0.192 4.192 27 C -0.199 4.199 28 C -0.184 4.184 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.136 0.864 32 H 0.189 0.811 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.142 0.858 36 H 0.154 0.846 37 H 0.248 0.752 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.204 0.796 41 H 0.055 0.945 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.077 0.923 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.329 9.864 -10.294 19.517 hybrid contribution -0.551 -1.462 0.890 1.798 sum -13.880 8.402 -9.404 18.753 Atomic orbital electron populations 1.23462 0.75908 1.05981 1.02730 1.86159 1.24044 1.26057 1.88066 1.18583 0.91380 0.84822 0.94011 1.21620 1.02155 0.90544 1.13830 1.18482 0.90320 0.85607 0.94218 1.86114 1.21276 1.28342 1.88150 1.23478 0.75991 1.06014 1.02636 1.20325 0.91091 0.98656 1.06469 1.19300 0.92143 0.93097 1.02044 1.18338 0.87098 0.83997 0.76284 1.90713 1.73740 1.28739 1.52263 1.45937 1.07750 1.08979 1.72550 1.21740 0.78649 0.98092 1.01971 1.20704 0.92201 0.89347 0.91466 0.92424 1.42593 1.73783 1.03136 1.17267 1.19500 1.31312 0.83637 1.00043 0.90225 1.25341 1.03163 1.00942 0.96843 1.69817 1.49746 1.35036 1.07157 0.85312 0.76432 0.82233 0.77274 1.18997 1.23007 1.22702 1.21619 0.95948 0.96573 0.98586 1.21730 0.99165 0.96618 1.01668 1.21858 1.00931 0.99657 0.97446 1.20546 0.92870 0.97374 1.07564 0.91283 0.90675 0.86401 0.81054 0.91064 0.91398 0.85819 0.84589 0.75179 0.92846 0.89528 0.79608 0.94512 0.93074 0.93453 0.93017 0.93187 0.92270 0.92037 0.92197 0.85069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.81 113.37 1.11 1.29 16 2 O -0.33 -8.34 10.49 -92.54 -0.97 -9.31 16 3 C 0.16 4.24 6.68 22.45 0.15 4.39 16 4 C -0.26 -5.65 8.02 22.51 0.18 -5.47 16 5 C 0.16 3.97 6.68 22.45 0.15 4.12 16 6 O -0.33 -6.89 10.49 -92.56 -0.97 -7.86 16 7 C 0.01 0.13 9.81 113.37 1.11 1.25 16 8 C -0.15 -4.40 9.53 22.64 0.22 -4.18 16 9 C -0.06 -2.05 5.87 -20.11 -0.12 -2.17 16 10 C 0.56 20.43 7.77 86.79 0.67 21.10 16 11 O -0.57 -23.70 16.34 -3.89 -0.06 -23.76 16 12 N -0.70 -24.96 5.34 -465.95 -2.49 -27.44 16 13 C 0.12 4.12 4.73 86.38 0.41 4.52 16 14 C 0.17 6.24 2.18 44.99 0.10 6.34 16 15 H 0.06 2.09 8.08 -2.39 -0.02 2.07 16 16 N -0.73 -33.42 4.44 -322.93 -1.43 -34.85 16 17 C -0.21 -10.76 7.57 84.04 0.64 -10.13 16 18 H 0.08 3.88 7.39 -2.91 -0.02 3.86 16 19 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 20 N -0.97 -57.14 13.06 21.65 0.28 -56.86 16 21 Si 0.96 44.78 29.55 68.60 2.03 46.81 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 24 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 25 C -0.11 -3.48 2.69 -10.79 -0.03 -3.51 16 26 C -0.13 -4.65 8.26 71.98 0.59 -4.05 16 27 C -0.14 -3.61 8.84 71.99 0.64 -2.98 16 28 C -0.16 -5.12 9.48 22.64 0.21 -4.91 16 29 H 0.07 0.77 7.66 -2.39 -0.02 0.75 16 30 H 0.07 0.72 7.65 -2.39 -0.02 0.71 16 31 H 0.12 1.25 8.14 -2.39 -0.02 1.24 16 32 H 0.17 2.32 4.49 -2.91 -0.01 2.31 16 33 H 0.07 0.54 7.65 -2.39 -0.02 0.52 16 34 H 0.07 0.57 7.66 -2.39 -0.02 0.55 16 35 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.14 4.25 7.64 -2.91 -0.02 4.23 16 37 H 0.41 14.88 6.17 -92.71 -0.57 14.31 16 38 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 39 H 0.09 2.69 6.71 -2.39 -0.02 2.67 16 40 H 0.37 19.15 7.80 -92.71 -0.72 18.42 16 41 H 0.25 14.37 8.31 -92.70 -0.77 13.60 16 42 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.05 2.10 6.01 -2.39 -0.01 2.09 16 46 H 0.06 1.44 6.54 -2.39 -0.02 1.42 16 47 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.13 4.32 6.40 -2.91 -0.02 4.30 16 Total: -1.00 -68.39 395.75 2.57 -65.81 By element: Atomic # 1 Polarization: 45.53 SS G_CDS: -0.31 Total: 45.21 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 6.50 Total: 2.24 kcal Atomic # 7 Polarization: -115.52 SS G_CDS: -3.64 Total: -119.15 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -2.01 Total: -40.93 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -68.39 2.57 -65.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753844607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.354 kcal (2) G-P(sol) polarization free energy of solvation -68.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds