Wall clock time and date at job start Sat Apr 11 2020 04:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47348 * 2 1 4 4 C 1.50698 * 109.46937 * 120.00114 * 2 1 3 5 5 O 1.33659 * 125.80132 * 299.99414 * 4 2 1 6 6 C 1.34211 * 110.90678 * 180.02562 * 5 4 2 7 7 C 1.34182 * 109.12795 * 359.71592 * 6 5 4 8 8 C 1.36414 * 125.80385 * 120.00394 * 4 2 1 9 9 C 1.47380 * 127.19308 * 359.97438 * 8 4 2 10 10 O 1.21618 * 119.99621 * 322.54297 * 9 8 4 11 11 N 1.34774 * 120.00300 * 142.53778 * 9 8 4 12 12 C 1.47157 * 120.98074 * 354.40528 * 11 9 8 13 13 C 1.53296 * 108.38321 * 230.55782 * 12 11 9 14 14 O 1.42961 * 109.26248 * 307.72196 * 13 12 11 15 15 C 1.42962 * 114.17362 * 62.50028 * 14 13 12 16 16 H 1.08997 * 109.51260 * 57.44725 * 15 14 13 17 17 C 1.52993 * 109.51440 * 177.55162 * 15 14 13 18 18 H 1.09003 * 109.47285 * 174.89627 * 17 15 14 19 19 C 1.53004 * 109.47191 * 54.89950 * 17 15 14 20 20 N 1.46497 * 109.47382 * 294.89831 * 17 15 14 21 21 C 1.36931 * 120.00170 * 204.99884 * 20 17 15 22 22 H 1.08002 * 120.00192 * 0.02562 * 21 20 17 23 23 C 1.38810 * 119.99998 * 179.97438 * 21 20 17 24 24 N 1.31620 * 120.00492 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 120.00316 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46713 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47311 * 119.99849 * 25 23 21 28 28 H 1.48496 * 109.47055 * 240.00208 * 25 23 21 29 29 C 1.47146 * 120.98306 * 174.42590 * 11 9 8 30 30 H 1.08998 * 109.46773 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47080 * 300.00143 * 1 2 3 32 32 H 1.09000 * 109.46713 * 60.00152 * 1 2 3 33 33 H 1.09000 * 109.47360 * 239.99734 * 2 1 3 34 34 H 1.08998 * 109.47443 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47173 * 300.00161 * 3 2 1 36 36 H 1.09000 * 109.47108 * 59.99579 * 3 2 1 37 37 H 1.08003 * 125.43292 * 179.97438 * 6 5 4 38 38 H 1.07996 * 127.02173 * 180.26974 * 7 6 5 39 39 H 1.09002 * 109.67871 * 350.27922 * 12 11 9 40 40 H 1.08998 * 109.68361 * 110.83488 * 12 11 9 41 41 H 1.09003 * 109.51386 * 67.61711 * 13 12 11 42 42 H 1.08993 * 109.51456 * 187.72402 * 13 12 11 43 43 H 1.09003 * 109.46743 * 300.00010 * 19 17 15 44 44 H 1.08999 * 109.46891 * 59.99621 * 19 17 15 45 45 H 1.09002 * 109.47515 * 180.02562 * 19 17 15 46 46 H 0.97003 * 119.99846 * 24.99724 * 20 17 15 47 47 H 0.96997 * 120.00459 * 179.97438 * 24 23 21 48 48 H 1.08997 * 109.68272 * 9.71810 * 29 11 9 49 49 H 1.08999 * 109.71148 * 249.18432 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.7820 -0.3563 2.4947 6 6 2.3773 -1.1974 3.3546 7 6 3.0362 -2.1397 2.6629 8 6 2.8199 -1.8242 1.2433 9 6 3.3403 -2.5608 0.0777 10 8 2.6500 -2.6948 -0.9146 11 7 4.5811 -3.0859 0.1114 12 6 5.4795 -2.8341 1.2493 13 6 6.8287 -2.3534 0.7029 14 8 7.2955 -3.2788 -0.2818 15 6 6.4464 -3.3936 -1.4262 16 1 6.3243 -2.4142 -1.8887 17 6 7.0738 -4.3597 -2.4331 18 1 6.3852 -4.5171 -3.2633 19 6 7.3595 -5.6970 -1.7470 20 7 8.3265 -3.7927 -2.9386 21 6 8.8033 -4.1707 -4.1653 22 1 8.2557 -4.8864 -4.7604 23 6 9.9900 -3.6331 -4.6444 24 7 10.6573 -2.7604 -3.9194 25 14 10.6402 -4.1481 -6.3182 26 1 9.7114 -5.1331 -6.9283 27 1 10.7438 -2.9557 -7.1974 28 1 11.9819 -4.7644 -6.1598 29 6 5.0776 -3.9275 -0.9888 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 2.3298 -1.1293 4.4314 38 1 3.6102 -2.9606 3.0665 39 1 5.0499 -2.0668 1.8934 40 1 5.6200 -3.7541 1.8168 41 1 6.7081 -1.3698 0.2489 42 1 7.5505 -2.2924 1.5173 43 1 8.0481 -5.5396 -0.9168 44 1 6.4274 -6.1188 -1.3709 45 1 7.8069 -6.3852 -2.4642 46 1 8.8182 -3.1496 -2.4042 47 1 11.4867 -2.3850 -4.2541 48 1 4.3819 -3.8844 -1.8267 49 1 5.1775 -4.9578 -0.6473 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485649050.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:33 Heat of formation + Delta-G solvation = -51.609055 kcal Electronic energy + Delta-G solvation = -30187.345323 eV Core-core repulsion = 26116.768085 eV Total energy + Delta-G solvation = -4070.577238 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.91550 -40.18648 -38.31105 -35.87339 -35.47765 -34.53290 -33.18830 -32.36732 -30.26889 -29.48715 -28.43570 -27.47817 -27.28468 -24.96623 -23.67489 -23.47834 -22.80891 -21.80949 -20.65107 -19.63856 -18.92892 -17.80331 -17.17348 -16.72492 -16.29467 -16.21269 -15.80156 -15.40361 -15.15323 -15.01222 -14.78294 -14.40928 -14.29173 -13.83167 -13.45785 -13.43463 -13.33071 -13.19493 -12.89808 -12.81008 -12.50489 -12.45851 -12.14326 -11.96637 -11.57598 -11.54350 -11.32092 -11.23990 -11.11114 -10.83933 -10.71279 -10.51529 -10.26752 -10.15243 -9.98232 -9.80391 -9.76147 -9.62956 -8.89609 -8.87994 -8.44891 -6.91121 -5.71594 -3.00228 1.21255 1.78507 2.49301 2.78801 3.04181 3.46142 3.51825 3.53996 4.00719 4.10604 4.35186 4.52748 4.60082 4.69151 4.77216 4.79223 4.96042 4.98559 5.12528 5.14712 5.22877 5.27882 5.31712 5.36973 5.47644 5.49625 5.54384 5.61649 5.62718 5.69829 5.75034 5.77585 5.82933 5.91480 5.93264 6.00175 6.00589 6.02461 6.23499 6.39862 6.48637 6.67376 6.76050 6.84474 7.18033 7.28694 7.50027 7.74308 8.06142 8.46561 9.58524 10.16285 10.52967 11.50931 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017858 B = 0.002656 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.578319 B =10538.046082 C =11071.234246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.027 4.027 3 C -0.149 4.149 4 C 0.079 3.921 5 O -0.172 6.172 6 C -0.039 4.039 7 C -0.189 4.189 8 C -0.237 4.237 9 C 0.591 3.409 10 O -0.538 6.538 11 N -0.604 5.604 12 C 0.069 3.931 13 C 0.046 3.954 14 O -0.358 6.358 15 C 0.077 3.923 16 H 0.063 0.937 17 C 0.185 3.815 18 H 0.059 0.941 19 C -0.162 4.162 20 N -0.719 5.719 21 C -0.237 4.237 22 H 0.071 0.929 23 C -0.014 4.014 24 N -0.931 5.931 25 Si 0.905 3.095 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 C 0.083 3.917 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.115 0.885 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.208 0.792 38 H 0.158 0.842 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.052 0.948 42 H 0.103 0.897 43 H 0.056 0.944 44 H 0.034 0.966 45 H 0.052 0.948 46 H 0.389 0.611 47 H 0.254 0.746 48 H 0.101 0.899 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.128 5.330 17.528 26.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.045 4.045 3 C -0.206 4.206 4 C 0.026 3.974 5 O -0.068 6.068 6 C -0.104 4.104 7 C -0.208 4.208 8 C -0.241 4.241 9 C 0.380 3.620 10 O -0.416 6.416 11 N -0.338 5.338 12 C -0.054 4.054 13 C -0.032 4.032 14 O -0.276 6.276 15 C 0.017 3.983 16 H 0.081 0.919 17 C 0.074 3.926 18 H 0.077 0.923 19 C -0.222 4.222 20 N -0.361 5.361 21 C -0.369 4.369 22 H 0.089 0.911 23 C -0.210 4.210 24 N -0.579 5.579 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.219 1.219 29 C -0.039 4.039 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.133 0.867 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.225 0.775 38 H 0.176 0.824 39 H 0.116 0.884 40 H 0.094 0.906 41 H 0.070 0.930 42 H 0.121 0.879 43 H 0.076 0.924 44 H 0.053 0.947 45 H 0.071 0.929 46 H 0.223 0.777 47 H 0.064 0.936 48 H 0.119 0.881 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -19.454 5.321 16.919 26.325 hybrid contribution 0.659 -0.215 -0.393 0.797 sum -18.794 5.107 16.526 25.542 Atomic orbital electron populations 1.21813 0.93026 1.02759 1.02523 1.20090 0.97033 0.96091 0.91259 1.21887 1.01679 0.94276 1.02778 1.22711 0.95804 0.94751 0.84110 1.83740 1.59653 1.48351 1.15046 1.23880 0.99215 0.91795 0.95554 1.22900 1.04688 1.02145 0.91056 1.21106 1.07913 1.01030 0.94044 1.17285 0.80864 0.78046 0.85764 1.90779 1.57738 1.59696 1.33427 1.47967 1.13451 1.50657 1.21680 1.22699 0.91377 1.02357 0.88975 1.22906 0.94381 0.93041 0.92869 1.88096 1.47777 1.62047 1.29684 1.22964 0.88238 1.00170 0.86906 0.91874 1.20195 0.89945 0.90565 0.91871 0.92283 1.22415 0.99693 0.98967 1.01145 1.42363 1.22513 1.51608 1.19598 1.19295 1.03817 1.19952 0.93791 0.91115 1.24738 0.97965 0.99680 0.98603 1.69688 1.17513 1.33114 1.37606 0.86138 0.78622 0.77608 0.83963 1.20551 1.21950 1.21927 1.22519 0.96641 0.94262 0.90518 0.91946 0.92218 0.91303 0.86665 0.92128 0.91196 0.92036 0.77547 0.82420 0.88448 0.90605 0.92959 0.87887 0.92448 0.94680 0.92892 0.77682 0.93643 0.88099 0.90044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.18 37.16 0.34 -0.87 16 2 C -0.03 -0.27 3.23 -91.77 -0.30 -0.56 16 3 C -0.15 -1.25 9.18 37.16 0.34 -0.91 16 4 C 0.08 0.87 5.88 -34.97 -0.21 0.67 16 5 O -0.17 -1.65 10.52 7.65 0.08 -1.57 16 6 C -0.04 -0.28 12.03 29.30 0.35 0.07 16 7 C -0.19 -1.67 8.75 -37.45 -0.33 -1.99 16 8 C -0.24 -2.83 5.38 -103.28 -0.56 -3.39 16 9 C 0.59 8.61 7.40 -12.54 -0.09 8.52 16 10 O -0.54 -9.32 15.03 5.26 0.08 -9.24 16 11 N -0.60 -8.26 3.02 -173.56 -0.52 -8.79 16 12 C 0.07 0.76 5.64 -3.53 -0.02 0.74 16 13 C 0.05 0.59 6.98 37.31 0.26 0.85 16 14 O -0.36 -6.16 9.24 -35.23 -0.33 -6.48 16 15 C 0.08 1.34 2.61 -26.58 -0.07 1.27 16 16 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 17 C 0.18 3.75 2.77 -67.93 -0.19 3.56 16 18 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 19 C -0.16 -3.02 9.06 37.16 0.34 -2.68 16 20 N -0.72 -18.43 5.10 -53.43 -0.27 -18.70 16 21 C -0.24 -6.66 9.93 -15.06 -0.15 -6.81 16 22 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 23 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 24 N -0.93 -28.51 13.06 55.49 0.72 -27.78 16 25 Si 0.91 22.64 29.55 -169.99 -5.02 17.61 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 29 C 0.08 1.25 5.84 -3.53 -0.02 1.23 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.12 1.40 6.38 -51.93 -0.33 1.07 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.21 0.66 8.06 -52.48 -0.42 0.24 16 38 H 0.16 1.10 7.41 -52.49 -0.39 0.71 16 39 H 0.10 0.90 4.92 -51.93 -0.26 0.64 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.06 1.12 7.56 -51.93 -0.39 0.73 16 44 H 0.03 0.54 6.42 -51.93 -0.33 0.21 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.39 10.75 7.58 -40.82 -0.31 10.44 16 47 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 48 H 0.10 1.59 7.06 -51.93 -0.37 1.23 16 49 H 0.08 1.16 6.27 -51.93 -0.33 0.83 16 LS Contribution 391.63 15.07 5.90 5.90 Total: -1.00 -33.93 391.63 -7.49 -41.42 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -7.74 Total: 8.45 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -0.39 Total: -0.81 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: -0.07 Total: -55.27 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.17 Total: -17.30 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.93 -7.49 -41.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485649050.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.191 kcal (2) G-P(sol) polarization free energy of solvation -33.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds