Wall clock time and date at job start Sat Apr 11 2020 04:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42901 * 109.47313 * 2 1 4 4 C 1.35969 * 117.00040 * 180.02562 * 3 2 1 5 5 C 1.38719 * 119.98657 * 180.02562 * 4 3 2 6 6 C 1.38087 * 120.01603 * 180.02562 * 5 4 3 7 7 C 1.38847 * 119.98558 * 359.97321 * 6 5 4 8 8 N 1.40109 * 120.01624 * 180.02562 * 7 6 5 9 9 C 1.46497 * 119.99917 * 237.41551 * 8 7 6 10 10 C 1.50701 * 109.47397 * 90.00022 * 9 8 7 11 11 H 1.07999 * 119.99623 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00043 * 180.02562 * 10 9 8 13 13 N 1.31511 * 120.00191 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99663 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47026 * 60.00173 * 14 12 10 16 16 H 1.48499 * 109.46840 * 179.97438 * 14 12 10 17 17 H 1.48492 * 109.47170 * 299.99733 * 14 12 10 18 18 C 1.34773 * 120.00092 * 57.41049 * 8 7 6 19 19 O 1.21300 * 119.99784 * 4.39516 * 18 8 7 20 20 C 1.50694 * 120.00144 * 184.38838 * 18 8 7 21 21 N 1.46904 * 109.47378 * 180.02562 * 20 18 8 22 22 C 1.46897 * 111.00035 * 66.04580 * 21 20 18 23 23 C 1.46900 * 111.00031 * 190.00615 * 21 20 18 24 24 C 1.52995 * 109.47567 * 68.15373 * 23 21 20 25 25 O 1.42903 * 109.47287 * 62.70179 * 24 23 21 26 26 C 1.38849 * 119.96909 * 0.28048 * 7 6 5 27 27 C 1.38089 * 119.98595 * 359.46447 * 26 7 6 28 28 H 1.08992 * 109.47478 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46588 * 299.99811 * 1 2 3 30 30 H 1.09000 * 109.47129 * 59.99322 * 1 2 3 31 31 H 1.09002 * 109.46588 * 240.00189 * 2 1 3 32 32 H 1.09000 * 109.47129 * 120.00678 * 2 1 3 33 33 H 1.08000 * 119.98971 * 0.02562 * 5 4 3 34 34 H 1.07997 * 120.00576 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.47240 * 210.00041 * 9 8 7 36 36 H 1.08998 * 109.47347 * 329.99704 * 9 8 7 37 37 H 0.97001 * 119.99812 * 180.02562 * 13 12 10 38 38 H 1.08996 * 109.47584 * 300.00346 * 20 18 8 39 39 H 1.09002 * 109.47157 * 60.00413 * 20 18 8 40 40 H 1.09006 * 109.46952 * 64.87623 * 22 21 20 41 41 H 1.08998 * 109.47406 * 184.87498 * 22 21 20 42 42 H 1.08999 * 109.47395 * 304.87735 * 22 21 20 43 43 H 1.09001 * 109.46514 * 188.15154 * 23 21 20 44 44 H 1.08998 * 109.46895 * 308.14507 * 23 21 20 45 45 H 1.08991 * 109.47485 * 182.70697 * 24 23 21 46 46 H 1.09005 * 109.46963 * 302.70835 * 24 23 21 47 47 H 0.96703 * 113.99549 * 179.97438 * 25 24 23 48 48 H 1.07997 * 120.00658 * 179.73017 * 26 7 6 49 49 H 1.08001 * 119.99767 * 180.23588 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3544 1.5254 -0.0005 5 6 3.8843 2.8074 0.0000 6 6 5.2532 2.9889 -0.0011 7 6 6.0993 1.8880 -0.0022 8 7 7.4883 2.0715 -0.0027 9 6 8.3034 1.4907 -1.0725 10 6 8.4258 2.4788 -2.2037 11 1 7.9442 3.4429 -2.1330 12 6 9.1518 2.1517 -3.3293 13 7 9.7379 0.9775 -3.4155 14 14 9.3028 3.3763 -4.7318 15 1 9.9487 4.6185 -4.2369 16 1 10.1292 2.7875 -5.8161 17 1 7.9513 3.6964 -5.2572 18 6 8.0745 2.7825 0.9808 19 8 7.4112 3.1957 1.9085 20 6 9.5540 3.0639 0.9281 21 7 9.9454 3.8491 2.1063 22 6 9.7823 3.0663 3.3386 23 6 11.3223 4.3441 1.9754 24 6 11.3844 5.3903 0.8607 25 8 10.5640 6.5072 1.2094 26 6 5.5682 0.6051 -0.0080 27 6 4.1991 0.4249 -0.0016 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.2261 3.6636 0.0012 34 1 5.6656 3.9871 -0.0011 35 1 9.2954 1.2556 -0.6865 36 1 7.8296 0.5790 -1.4361 37 1 10.2489 0.7476 -4.2073 38 1 10.1030 2.1223 0.9207 39 1 9.7849 3.6262 0.0233 40 1 10.4717 2.2220 3.3266 41 1 9.9959 3.6976 4.2011 42 1 8.7583 2.6983 3.4024 43 1 11.6367 4.7964 2.9160 44 1 11.9853 3.5139 1.7319 45 1 12.4143 5.7224 0.7311 46 1 11.0243 4.9515 -0.0699 47 1 10.5559 7.2113 0.5466 48 1 6.2257 -0.2516 -0.0132 49 1 3.7858 -0.5729 -0.0023 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011484223.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:41 Heat of formation + Delta-G solvation = -79.406143 kcal Electronic energy + Delta-G solvation = -29865.870519 eV Core-core repulsion = 25794.087908 eV Total energy + Delta-G solvation = -4071.782610 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.16351 -39.31985 -37.75313 -36.78627 -35.41383 -34.78250 -32.65990 -31.75292 -30.58972 -29.60353 -28.99901 -27.67140 -26.71590 -24.17421 -23.90269 -23.16324 -22.11209 -21.50161 -20.64632 -18.71737 -18.03183 -17.22233 -16.80865 -16.77027 -16.04883 -15.97379 -15.53925 -15.47612 -14.84751 -14.58674 -14.34865 -14.07994 -13.82272 -13.62420 -13.25616 -13.19458 -13.05686 -12.82099 -12.76881 -12.48010 -12.44071 -12.02383 -11.96963 -11.79065 -11.62972 -11.58606 -11.40281 -11.30461 -11.05752 -10.84470 -10.67963 -10.57772 -10.52020 -10.23624 -9.88305 -9.71143 -9.08099 -8.64394 -8.59632 -8.41060 -7.91661 -7.24912 -6.24735 -4.32636 1.75895 1.80122 3.19369 3.25029 3.26341 3.34019 3.35709 3.64852 4.17296 4.27826 4.35261 4.50261 4.85626 4.90471 5.07890 5.13087 5.21804 5.23721 5.25306 5.27415 5.41132 5.44073 5.51640 5.65818 5.67473 5.68420 5.74623 5.79431 5.85281 5.92112 5.94262 5.98191 6.01427 6.15860 6.28758 6.37591 6.39601 6.65642 6.77798 6.89284 7.04208 7.10414 7.24639 7.36213 7.55206 7.68156 7.78060 7.89499 7.96360 8.20405 8.72229 8.98855 9.35172 10.81491 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009007 B = 0.003843 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3108.056937 B = 7284.973267 C = 9305.110708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.320 6.320 4 C 0.107 3.893 5 C -0.139 4.139 6 C -0.070 4.070 7 C 0.146 3.854 8 N -0.558 5.558 9 C 0.238 3.762 10 C -0.538 4.538 11 H 0.062 0.938 12 C 0.067 3.933 13 N -0.891 5.891 14 Si 0.896 3.104 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.275 1.275 18 C 0.524 3.476 19 O -0.538 6.538 20 C 0.041 3.959 21 N -0.516 5.516 22 C 0.022 3.978 23 C 0.057 3.943 24 C 0.076 3.924 25 O -0.557 6.557 26 C -0.091 4.091 27 C -0.196 4.196 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.040 0.960 36 H 0.039 0.961 37 H 0.266 0.734 38 H 0.060 0.940 39 H 0.117 0.883 40 H 0.015 0.985 41 H 0.062 0.938 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.047 0.953 45 H 0.045 0.955 46 H 0.053 0.947 47 H 0.371 0.629 48 H 0.125 0.875 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.737 -0.272 6.721 8.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.235 6.235 4 C 0.062 3.938 5 C -0.158 4.158 6 C -0.090 4.090 7 C 0.054 3.946 8 N -0.286 5.286 9 C 0.119 3.881 10 C -0.576 4.576 11 H 0.081 0.919 12 C -0.136 4.136 13 N -0.529 5.529 14 Si 0.724 3.276 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.200 1.200 18 C 0.313 3.687 19 O -0.416 6.416 20 C -0.089 4.089 21 N -0.241 5.241 22 C -0.126 4.126 23 C -0.071 4.071 24 C -0.003 4.003 25 O -0.361 6.361 26 C -0.111 4.111 27 C -0.215 4.215 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.135 0.865 40 H 0.033 0.967 41 H 0.081 0.919 42 H 0.106 0.894 43 H 0.098 0.902 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.071 0.929 47 H 0.217 0.783 48 H 0.143 0.857 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.472 -0.007 7.654 9.409 hybrid contribution 1.067 -0.166 -1.729 2.039 sum -4.405 -0.173 5.925 7.385 Atomic orbital electron populations 1.21762 0.93145 1.02535 1.03352 1.22703 0.95471 0.82604 1.01306 1.86033 1.19462 1.28640 1.89364 1.18846 0.81756 0.94128 0.99027 1.20180 0.94556 0.94585 1.06494 1.20957 0.91822 0.98871 0.97352 1.17505 0.83856 0.92590 1.00643 1.45971 1.04423 1.52149 1.26061 1.19563 0.90100 0.94565 0.83846 1.21416 1.32881 1.01908 1.01412 0.91941 1.24914 0.95046 0.95435 0.98208 1.69905 1.33174 1.20429 1.29421 0.86572 0.78405 0.81141 0.81506 1.20053 1.21118 1.19993 1.20388 0.89937 0.77112 0.81308 1.90611 1.65609 1.51287 1.34046 1.22035 0.93237 0.97970 0.95645 1.61581 1.22122 1.38566 1.01788 1.22520 1.02876 0.95486 0.91750 1.22141 0.89255 0.96118 0.99586 1.22249 0.93020 0.87480 0.97518 1.86603 1.70695 1.30356 1.48443 1.20882 0.94350 0.96455 0.99410 1.20940 0.93638 0.97647 1.09268 0.90653 0.91682 0.91622 0.92161 0.92282 0.85476 0.85463 0.94236 0.94249 0.92401 0.92183 0.86525 0.96669 0.91881 0.89446 0.90181 0.93465 0.93733 0.92856 0.78317 0.85705 0.85784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 37.16 0.38 -0.89 16 2 C 0.05 0.60 5.46 37.16 0.20 0.80 16 3 O -0.32 -4.75 10.14 -19.64 -0.20 -4.95 16 4 C 0.11 1.78 6.69 -39.22 -0.26 1.52 16 5 C -0.14 -2.42 9.98 -39.46 -0.39 -2.81 16 6 C -0.07 -1.38 8.96 -39.41 -0.35 -1.73 16 7 C 0.15 3.00 5.15 -83.62 -0.43 2.57 16 8 N -0.56 -11.99 2.56 -114.70 -0.29 -12.28 16 9 C 0.24 5.53 4.86 -5.19 -0.03 5.51 16 10 C -0.54 -13.62 9.17 -34.44 -0.32 -13.93 16 11 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 12 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 13 N -0.89 -23.77 13.29 55.43 0.74 -23.04 16 14 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 15 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 16 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 18 C 0.52 11.07 7.15 -10.99 -0.08 10.99 16 19 O -0.54 -12.28 13.72 5.54 0.08 -12.21 16 20 C 0.04 0.78 3.96 -4.98 -0.02 0.76 16 21 N -0.52 -8.94 4.40 -244.38 -1.07 -10.02 16 22 C 0.02 0.34 9.20 60.06 0.55 0.90 16 23 C 0.06 0.81 5.36 -3.83 -0.02 0.79 16 24 C 0.08 1.04 7.12 37.15 0.26 1.30 16 25 O -0.56 -8.29 13.57 -35.23 -0.48 -8.77 16 26 C -0.09 -1.67 9.32 -39.41 -0.37 -2.04 16 27 C -0.20 -3.16 9.03 -39.45 -0.36 -3.51 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.62 7.66 -51.93 -0.40 0.23 16 32 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 33 H 0.13 1.95 8.06 -52.49 -0.42 1.53 16 34 H 0.13 2.55 8.06 -52.49 -0.42 2.12 16 35 H 0.04 0.93 6.47 -51.93 -0.34 0.59 16 36 H 0.04 0.97 7.37 -51.93 -0.38 0.58 16 37 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 38 H 0.06 1.08 7.25 -51.93 -0.38 0.71 16 39 H 0.12 2.29 5.93 -51.93 -0.31 1.99 16 40 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.06 0.90 8.12 -51.93 -0.42 0.48 16 42 H 0.09 1.58 5.82 -51.93 -0.30 1.28 16 43 H 0.08 1.06 8.04 -51.93 -0.42 0.64 16 44 H 0.05 0.61 8.10 -51.93 -0.42 0.19 16 45 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.05 0.80 6.34 -51.93 -0.33 0.47 16 47 H 0.37 3.87 9.12 45.56 0.42 4.29 16 48 H 0.12 2.16 7.84 -52.49 -0.41 1.75 16 49 H 0.12 1.63 6.29 -52.49 -0.33 1.30 16 LS Contribution 400.61 15.07 6.04 6.04 Total: -1.00 -31.08 400.61 -8.46 -39.54 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -6.92 Total: 8.79 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -1.32 Total: 1.85 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: -0.63 Total: -45.33 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.60 Total: -25.93 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.08 -8.46 -39.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011484223.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.871 kcal (2) G-P(sol) polarization free energy of solvation -31.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds