Wall clock time and date at job start Sat Apr 11 2020 04:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42901 * 109.47313 * 2 1 4 4 C 1.35969 * 117.00040 * 180.02562 * 3 2 1 5 5 C 1.38719 * 119.98657 * 180.02562 * 4 3 2 6 6 C 1.38087 * 120.01603 * 180.02562 * 5 4 3 7 7 C 1.38847 * 119.98558 * 359.97321 * 6 5 4 8 8 N 1.40109 * 120.01624 * 180.02562 * 7 6 5 9 9 C 1.46497 * 119.99917 * 237.41551 * 8 7 6 10 10 C 1.50701 * 109.47397 * 90.00022 * 9 8 7 11 11 H 1.07999 * 119.99623 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00043 * 180.02562 * 10 9 8 13 13 N 1.31511 * 120.00191 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99663 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47026 * 60.00173 * 14 12 10 16 16 H 1.48499 * 109.46840 * 179.97438 * 14 12 10 17 17 H 1.48492 * 109.47170 * 299.99733 * 14 12 10 18 18 C 1.34773 * 120.00092 * 57.41049 * 8 7 6 19 19 O 1.21300 * 119.99784 * 4.39516 * 18 8 7 20 20 C 1.50694 * 120.00144 * 184.38838 * 18 8 7 21 21 N 1.46904 * 109.47378 * 180.02562 * 20 18 8 22 22 C 1.46897 * 111.00035 * 66.04580 * 21 20 18 23 23 C 1.46900 * 111.00031 * 190.00615 * 21 20 18 24 24 C 1.52995 * 109.47567 * 68.15373 * 23 21 20 25 25 O 1.42903 * 109.47287 * 62.70179 * 24 23 21 26 26 C 1.38849 * 119.96909 * 0.28048 * 7 6 5 27 27 C 1.38089 * 119.98595 * 359.46447 * 26 7 6 28 28 H 1.08992 * 109.47478 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46588 * 299.99811 * 1 2 3 30 30 H 1.09000 * 109.47129 * 59.99322 * 1 2 3 31 31 H 1.09002 * 109.46588 * 240.00189 * 2 1 3 32 32 H 1.09000 * 109.47129 * 120.00678 * 2 1 3 33 33 H 1.08000 * 119.98971 * 0.02562 * 5 4 3 34 34 H 1.07997 * 120.00576 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.47240 * 210.00041 * 9 8 7 36 36 H 1.08998 * 109.47347 * 329.99704 * 9 8 7 37 37 H 0.97001 * 119.99812 * 180.02562 * 13 12 10 38 38 H 1.08996 * 109.47584 * 300.00346 * 20 18 8 39 39 H 1.09002 * 109.47157 * 60.00413 * 20 18 8 40 40 H 1.09006 * 109.46952 * 64.87623 * 22 21 20 41 41 H 1.08998 * 109.47406 * 184.87498 * 22 21 20 42 42 H 1.08999 * 109.47395 * 304.87735 * 22 21 20 43 43 H 1.09001 * 109.46514 * 188.15154 * 23 21 20 44 44 H 1.08998 * 109.46895 * 308.14507 * 23 21 20 45 45 H 1.08991 * 109.47485 * 182.70697 * 24 23 21 46 46 H 1.09005 * 109.46963 * 302.70835 * 24 23 21 47 47 H 0.96703 * 113.99549 * 179.97438 * 25 24 23 48 48 H 1.07997 * 120.00658 * 179.73017 * 26 7 6 49 49 H 1.08001 * 119.99767 * 180.23588 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3544 1.5254 -0.0005 5 6 3.8843 2.8074 0.0000 6 6 5.2532 2.9889 -0.0011 7 6 6.0993 1.8880 -0.0022 8 7 7.4883 2.0715 -0.0027 9 6 8.3034 1.4907 -1.0725 10 6 8.4258 2.4788 -2.2037 11 1 7.9442 3.4429 -2.1330 12 6 9.1518 2.1517 -3.3293 13 7 9.7379 0.9775 -3.4155 14 14 9.3028 3.3763 -4.7318 15 1 9.9487 4.6185 -4.2369 16 1 10.1292 2.7875 -5.8161 17 1 7.9513 3.6964 -5.2572 18 6 8.0745 2.7825 0.9808 19 8 7.4112 3.1957 1.9085 20 6 9.5540 3.0639 0.9281 21 7 9.9454 3.8491 2.1063 22 6 9.7823 3.0663 3.3386 23 6 11.3223 4.3441 1.9754 24 6 11.3844 5.3903 0.8607 25 8 10.5640 6.5072 1.2094 26 6 5.5682 0.6051 -0.0080 27 6 4.1991 0.4249 -0.0016 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.2261 3.6636 0.0012 34 1 5.6656 3.9871 -0.0011 35 1 9.2954 1.2556 -0.6865 36 1 7.8296 0.5790 -1.4361 37 1 10.2489 0.7476 -4.2073 38 1 10.1030 2.1223 0.9207 39 1 9.7849 3.6262 0.0233 40 1 10.4717 2.2220 3.3266 41 1 9.9959 3.6976 4.2011 42 1 8.7583 2.6983 3.4024 43 1 11.6367 4.7964 2.9160 44 1 11.9853 3.5139 1.7319 45 1 12.4143 5.7224 0.7311 46 1 11.0243 4.9515 -0.0699 47 1 10.5559 7.2113 0.5466 48 1 6.2257 -0.2516 -0.0132 49 1 3.7858 -0.5729 -0.0023 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000011484223.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:40 Heat of formation + Delta-G solvation = -100.696337 kcal Electronic energy + Delta-G solvation = -29866.793731 eV Core-core repulsion = 25794.087908 eV Total energy + Delta-G solvation = -4072.705822 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.64362 -40.67787 -39.01779 -38.10372 -36.67360 -36.45292 -34.53576 -32.73270 -31.94601 -30.88735 -30.29486 -29.36325 -28.28671 -25.43175 -25.16270 -24.79862 -23.47571 -22.74296 -21.89493 -20.24367 -19.26055 -18.69932 -18.37466 -18.29653 -17.66496 -17.01851 -16.94478 -16.79695 -16.39808 -16.08942 -15.74859 -15.48585 -15.23618 -14.84871 -14.52414 -14.39674 -14.33464 -14.23997 -14.09914 -13.89055 -13.63581 -13.45311 -13.23208 -13.14831 -12.97486 -12.93015 -12.79535 -12.65953 -12.61838 -12.50341 -12.13525 -11.92999 -11.76529 -11.69598 -11.58277 -10.80507 -10.75354 -10.58689 -10.04879 -9.97015 -9.22437 -8.76852 -8.20430 -6.36297 0.35059 0.36489 1.41028 1.43195 1.50054 1.69494 2.07888 2.28858 2.40246 2.76282 3.00546 3.08560 3.49588 3.75500 3.82815 3.89228 4.09552 4.09816 4.19482 4.22068 4.30005 4.31535 4.33715 4.39471 4.41022 4.53057 4.54499 4.66385 4.71617 4.73698 4.75684 4.91529 4.92447 4.97376 4.97904 5.08673 5.09726 5.11864 5.21536 5.33012 5.47192 5.59752 5.68129 5.88179 6.01695 6.06868 6.14050 6.46018 6.50205 6.75542 6.99088 7.28422 7.38796 8.83318 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009007 B = 0.003843 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3108.056937 B = 7284.973267 C = 9305.110708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.041 3.959 3 O -0.328 6.328 4 C 0.114 3.886 5 C -0.144 4.144 6 C -0.086 4.086 7 C 0.108 3.892 8 N -0.558 5.558 9 C 0.254 3.746 10 C -0.545 4.545 11 H 0.049 0.951 12 C 0.029 3.971 13 N -0.916 5.916 14 Si 0.952 3.048 15 H -0.266 1.266 16 H -0.279 1.279 17 H -0.278 1.278 18 C 0.518 3.482 19 O -0.559 6.559 20 C 0.053 3.947 21 N -0.535 5.535 22 C 0.026 3.974 23 C 0.054 3.946 24 C 0.075 3.925 25 O -0.580 6.580 26 C -0.099 4.099 27 C -0.187 4.187 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.145 0.855 34 H 0.111 0.889 35 H 0.036 0.964 36 H 0.024 0.976 37 H 0.269 0.731 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.032 0.968 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.094 0.906 44 H 0.063 0.937 45 H 0.077 0.923 46 H 0.034 0.966 47 H 0.388 0.612 48 H 0.130 0.870 49 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.204 -0.632 6.652 8.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.034 4.034 3 O -0.242 6.242 4 C 0.069 3.931 5 C -0.163 4.163 6 C -0.106 4.106 7 C 0.017 3.983 8 N -0.286 5.286 9 C 0.135 3.865 10 C -0.584 4.584 11 H 0.068 0.932 12 C -0.172 4.172 13 N -0.555 5.555 14 Si 0.777 3.223 15 H -0.191 1.191 16 H -0.204 1.204 17 H -0.204 1.204 18 C 0.308 3.692 19 O -0.438 6.438 20 C -0.077 4.077 21 N -0.260 5.260 22 C -0.122 4.122 23 C -0.074 4.074 24 C -0.003 4.003 25 O -0.387 6.387 26 C -0.119 4.119 27 C -0.206 4.206 28 H 0.120 0.880 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.162 0.838 34 H 0.130 0.870 35 H 0.054 0.946 36 H 0.042 0.958 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.123 0.877 40 H 0.050 0.950 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.112 0.888 44 H 0.081 0.919 45 H 0.095 0.905 46 H 0.053 0.947 47 H 0.236 0.764 48 H 0.148 0.852 49 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.950 -0.361 7.584 9.646 hybrid contribution 1.071 -0.091 -1.671 1.987 sum -4.879 -0.452 5.913 7.680 Atomic orbital electron populations 1.21796 0.91155 1.04217 1.03205 1.23110 0.97112 0.80840 1.02300 1.86051 1.18018 1.31339 1.88837 1.18910 0.82881 0.93804 0.97549 1.20352 0.93847 0.96021 1.06051 1.20907 0.92913 0.98012 0.98750 1.17849 0.83494 0.93896 1.03076 1.45904 1.04975 1.52107 1.25581 1.19223 0.89916 0.93524 0.83858 1.21531 1.32796 1.01698 1.02363 0.93248 1.25547 0.94658 0.96864 1.00127 1.69983 1.33703 1.21693 1.30124 0.85704 0.78132 0.79548 0.78938 1.19089 1.20433 1.20392 1.20840 0.90900 0.76640 0.80827 1.90584 1.66366 1.52136 1.34716 1.21862 0.91593 0.98160 0.96135 1.61585 1.24402 1.38567 1.01450 1.22451 1.01658 0.96305 0.91770 1.22296 0.87752 0.96743 1.00582 1.22313 0.94444 0.87179 0.96392 1.86549 1.71297 1.31200 1.49677 1.21042 0.95598 0.95733 0.99495 1.21248 0.92565 0.99244 1.07531 0.88041 0.91752 0.91874 0.91283 0.91077 0.83764 0.87045 0.94634 0.95807 0.92191 0.91743 0.87696 0.94970 0.90248 0.92143 0.88807 0.91870 0.90531 0.94747 0.76391 0.85182 0.82422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 10.28 71.98 0.74 -1.32 16 2 C 0.04 0.78 5.46 71.98 0.39 1.18 16 3 O -0.33 -9.07 10.14 -93.20 -0.94 -10.01 16 4 C 0.11 3.65 6.69 22.50 0.15 3.80 16 5 C -0.14 -5.01 9.98 22.35 0.22 -4.78 16 6 C -0.09 -3.49 8.96 22.38 0.20 -3.29 16 7 C 0.11 4.60 5.15 38.11 0.20 4.79 16 8 N -0.56 -24.92 2.56 -635.18 -1.63 -26.55 16 9 C 0.25 12.21 4.86 85.63 0.42 12.63 16 10 C -0.55 -28.26 9.17 25.60 0.23 -28.02 16 11 H 0.05 2.65 7.81 -2.91 -0.02 2.62 16 12 C 0.03 1.49 5.46 84.66 0.46 1.95 16 13 N -0.92 -49.07 13.29 21.45 0.28 -48.78 16 14 Si 0.95 41.06 29.54 68.60 2.03 43.08 16 15 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 16 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 17 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 18 C 0.52 22.74 7.15 87.66 0.63 23.37 16 19 O -0.56 -26.51 13.72 -3.09 -0.04 -26.56 16 20 C 0.05 2.03 3.96 85.55 0.34 2.37 16 21 N -0.54 -18.47 4.40 -927.07 -4.08 -22.55 16 22 C 0.03 0.81 9.20 127.69 1.17 1.99 16 23 C 0.05 1.45 5.36 86.30 0.46 1.91 16 24 C 0.07 1.97 7.12 71.98 0.51 2.49 16 25 O -0.58 -16.88 13.57 -148.98 -2.02 -18.90 16 26 C -0.10 -3.64 9.32 22.38 0.21 -3.43 16 27 C -0.19 -5.77 9.03 22.35 0.20 -5.57 16 28 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 1.22 7.66 -2.39 -0.02 1.20 16 32 H 0.07 1.21 7.66 -2.39 -0.02 1.19 16 33 H 0.14 4.38 8.06 -2.91 -0.02 4.35 16 34 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 35 H 0.04 1.72 6.47 -2.39 -0.02 1.71 16 36 H 0.02 1.21 7.37 -2.39 -0.02 1.19 16 37 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 38 H 0.06 2.37 7.25 -2.39 -0.02 2.36 16 39 H 0.11 4.27 5.93 -2.39 -0.01 4.26 16 40 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.08 2.18 8.12 -2.39 -0.02 2.16 16 42 H 0.06 2.23 5.82 -2.39 -0.01 2.21 16 43 H 0.09 2.28 8.04 -2.39 -0.02 2.26 16 44 H 0.06 1.51 8.10 -2.39 -0.02 1.49 16 45 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.03 1.03 6.34 -2.38 -0.02 1.02 16 47 H 0.39 7.84 9.12 -74.06 -0.68 7.16 16 48 H 0.13 4.54 7.84 -2.91 -0.02 4.51 16 49 H 0.16 3.70 6.29 -2.91 -0.02 3.68 16 Total: -1.00 -67.26 400.61 0.42 -66.84 By element: Atomic # 1 Polarization: 33.09 SS G_CDS: 0.28 Total: 33.37 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 6.54 Total: 10.06 kcal Atomic # 7 Polarization: -92.47 SS G_CDS: -5.42 Total: -97.89 kcal Atomic # 8 Polarization: -52.46 SS G_CDS: -3.01 Total: -55.47 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.08 kcal Total: -67.26 0.42 -66.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011484223.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.854 kcal (2) G-P(sol) polarization free energy of solvation -67.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds