Wall clock time and date at job start Sat Apr 11 2020 04:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46900 * 109.47254 * 2 1 4 4 C 1.46896 * 110.99972 * 199.98609 * 3 2 1 5 5 C 1.50699 * 109.47116 * 66.04794 * 4 3 2 6 6 O 1.21280 * 120.00280 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00337 * 179.97438 * 5 4 3 8 8 C 1.46496 * 120.00476 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.47272 * 180.02562 * 8 7 5 10 10 H 1.07998 * 120.00277 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99791 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00258 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99744 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47195 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46908 * 120.00575 * 13 11 9 16 16 H 1.48503 * 109.47099 * 240.00167 * 13 11 9 17 17 C 1.46895 * 110.99865 * 76.03218 * 3 2 1 18 18 C 1.50705 * 109.47150 * 199.69028 * 17 3 2 19 19 C 1.38255 * 119.92405 * 264.49279 * 18 17 3 20 20 C 1.38243 * 120.14435 * 179.76791 * 19 18 17 21 21 C 1.38563 * 119.99761 * 0.46233 * 20 19 18 22 22 O 1.36000 * 120.07041 * 179.79419 * 21 20 19 23 23 C 1.42891 * 117.00176 * 359.72180 * 22 21 20 24 24 C 1.39152 * 119.85297 * 359.51365 * 21 20 19 25 25 O 1.36000 * 120.06931 * 180.23253 * 24 21 20 26 26 C 1.42899 * 116.99894 * 180.02562 * 25 24 21 27 27 C 1.38239 * 119.92622 * 84.46757 * 18 17 3 28 28 H 1.08998 * 109.47270 * 54.86755 * 1 2 3 29 29 H 1.09002 * 109.47124 * 174.87501 * 1 2 3 30 30 H 1.09010 * 109.47105 * 294.86592 * 1 2 3 31 31 H 1.09001 * 109.47139 * 240.00253 * 2 1 3 32 32 H 1.09003 * 109.47188 * 120.00172 * 2 1 3 33 33 H 1.08998 * 109.46918 * 186.04385 * 4 3 2 34 34 H 1.08994 * 109.47529 * 306.04653 * 4 3 2 35 35 H 0.97006 * 119.99467 * 0.02562 * 7 5 4 36 36 H 1.08998 * 109.47202 * 300.00409 * 8 7 5 37 37 H 1.09003 * 109.46542 * 60.00588 * 8 7 5 38 38 H 0.97003 * 119.99861 * 180.02562 * 12 11 9 39 39 H 1.08998 * 109.47297 * 79.68961 * 17 3 2 40 40 H 1.08999 * 109.47358 * 319.69112 * 17 3 2 41 41 H 1.08001 * 119.93020 * 0.02562 * 19 18 17 42 42 H 1.08003 * 119.99782 * 180.22991 * 20 19 18 43 43 H 1.09003 * 109.47198 * 299.99783 * 23 22 21 44 44 H 1.08997 * 109.47222 * 59.99952 * 23 22 21 45 45 H 1.08999 * 109.47230 * 180.02562 * 23 22 21 46 46 H 1.09001 * 109.47605 * 59.99639 * 26 25 24 47 47 H 1.09002 * 109.47217 * 179.97438 * 26 25 24 48 48 H 1.09001 * 109.46994 * 299.99809 * 26 25 24 49 49 H 1.07994 * 120.00440 * 0.02625 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4102 1.4517 -0.4687 5 6 3.4710 1.0500 -1.9199 6 8 2.4559 0.7383 -2.5059 7 7 4.6533 1.0370 -2.5667 8 6 4.7125 0.6460 -3.9773 9 6 6.1390 0.7145 -4.4582 10 1 6.9233 1.0185 -3.7808 11 6 6.4430 0.3891 -5.7631 12 7 5.4880 0.0194 -6.5882 13 14 8.2115 0.4733 -6.3590 14 1 9.0889 0.9130 -5.2446 15 1 8.6408 -0.8692 -6.8264 16 1 8.3105 1.4426 -7.4797 17 6 1.8830 1.9916 1.3308 18 6 1.9237 3.4929 1.2052 19 6 3.1152 4.1686 1.3929 20 6 3.1587 5.5452 1.2740 21 6 2.0046 6.2517 0.9756 22 8 2.0449 7.6063 0.8624 23 6 3.3101 8.2373 1.0700 24 6 0.8056 5.5714 0.7861 25 8 -0.3288 6.2599 0.4884 26 6 -1.5229 5.4960 0.3080 27 6 0.7698 4.1911 0.9020 28 1 -0.3634 0.5914 -0.8404 29 1 -0.3633 -1.0236 -0.0918 30 1 -0.3634 0.4322 0.9325 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.7825 2.4701 -0.3578 34 1 4.0258 0.7734 0.1221 35 1 5.4653 1.2859 -2.0979 36 1 4.3407 -0.3727 -4.0878 37 1 4.0965 1.3238 -4.5683 38 1 5.7019 -0.2099 -7.5061 39 1 2.7020 1.6580 1.9680 40 1 0.9332 1.6896 1.7721 41 1 4.0148 3.6195 1.6288 42 1 4.0915 6.0704 1.4175 43 1 3.6652 8.0169 2.0767 44 1 4.0277 7.8611 0.3410 45 1 3.2022 9.3155 0.9512 46 1 -1.7450 4.9473 1.2233 47 1 -2.3511 6.1656 0.0761 48 1 -1.3835 4.7922 -0.5127 49 1 -0.1596 3.6609 0.7559 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025358239.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:44 Heat of formation + Delta-G solvation = -77.597321 kcal Electronic energy + Delta-G solvation = -29303.785435 eV Core-core repulsion = 25232.081261 eV Total energy + Delta-G solvation = -4071.704174 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.71225 -39.25417 -38.54267 -37.70397 -36.19881 -34.08059 -32.32740 -31.62571 -30.67694 -30.33664 -28.37232 -27.44663 -27.37218 -26.26353 -24.42884 -22.54695 -22.25926 -21.79071 -20.74602 -19.56828 -18.53975 -17.37842 -17.10664 -16.76978 -16.20115 -15.87013 -15.62177 -15.36761 -15.31542 -14.92140 -14.84317 -14.63017 -14.56583 -14.17425 -13.80712 -13.60144 -13.45758 -12.90836 -12.72590 -12.48606 -12.40777 -12.23816 -11.98076 -11.85157 -11.73171 -11.67946 -11.33196 -11.30894 -11.24366 -11.05955 -11.00820 -10.92512 -10.86556 -10.60161 -10.29880 -9.36438 -8.96385 -8.77365 -8.71939 -8.22984 -7.86972 -7.80907 -6.15756 -4.22406 1.19194 1.30247 3.13529 3.16984 3.23566 3.30517 3.33494 3.42797 3.48521 3.90334 4.28436 4.43759 4.59166 4.68724 4.83150 4.93225 4.97367 4.98527 5.07365 5.08139 5.20221 5.20973 5.24608 5.29637 5.30771 5.37050 5.38125 5.41133 5.55085 5.59171 5.62201 5.68911 5.69902 5.93723 6.01361 6.13217 6.21612 6.40599 6.47512 6.55784 6.92109 7.03907 7.15448 7.35248 7.46478 7.48840 7.54685 7.69743 7.98820 8.67097 8.81357 9.16684 9.44555 10.94491 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010330 B = 0.002815 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.826287 B = 9943.932815 C =11452.103287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.049 3.951 3 N -0.513 5.513 4 C 0.033 3.967 5 C 0.499 3.501 6 O -0.537 6.537 7 N -0.716 5.716 8 C 0.252 3.748 9 C -0.542 4.542 10 H 0.063 0.937 11 C 0.063 3.937 12 N -0.885 5.885 13 Si 0.903 3.097 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.282 1.282 17 C 0.095 3.905 18 C -0.070 4.070 19 C -0.113 4.113 20 C -0.171 4.171 21 C 0.096 3.904 22 O -0.309 6.309 23 C 0.027 3.973 24 C 0.098 3.902 25 O -0.309 6.309 26 C 0.026 3.974 27 C -0.146 4.146 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.044 0.956 31 H 0.092 0.908 32 H 0.026 0.974 33 H 0.099 0.901 34 H 0.056 0.944 35 H 0.389 0.611 36 H 0.025 0.975 37 H 0.026 0.974 38 H 0.265 0.735 39 H 0.045 0.955 40 H 0.085 0.915 41 H 0.125 0.875 42 H 0.134 0.866 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.098 0.902 46 H 0.053 0.947 47 H 0.098 0.902 48 H 0.058 0.942 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.009 10.123 21.372 24.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.078 4.078 3 N -0.238 5.238 4 C -0.099 4.099 5 C 0.283 3.717 6 O -0.415 6.415 7 N -0.365 5.365 8 C 0.131 3.869 9 C -0.580 4.580 10 H 0.081 0.919 11 C -0.141 4.141 12 N -0.523 5.523 13 Si 0.730 3.270 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.032 4.032 18 C -0.071 4.071 19 C -0.131 4.131 20 C -0.190 4.190 21 C 0.050 3.950 22 O -0.222 6.222 23 C -0.068 4.068 24 C 0.052 3.948 25 O -0.222 6.222 26 C -0.069 4.069 27 C -0.165 4.165 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.111 0.889 32 H 0.045 0.955 33 H 0.117 0.883 34 H 0.074 0.926 35 H 0.221 0.779 36 H 0.043 0.957 37 H 0.044 0.956 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.103 0.897 41 H 0.143 0.857 42 H 0.152 0.848 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.116 0.884 46 H 0.071 0.929 47 H 0.116 0.884 48 H 0.077 0.923 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.256 10.420 20.323 24.643 hybrid contribution 2.096 -0.531 0.311 2.185 sum -7.160 9.889 20.634 23.975 Atomic orbital electron populations 1.21695 0.95029 1.01327 1.01672 1.22196 0.96369 0.87924 1.01297 1.61626 1.19216 1.19198 1.23731 1.22067 0.90166 1.02766 0.94856 1.20281 0.84333 0.78903 0.88217 1.90641 1.34076 1.48446 1.68325 1.46451 1.07849 1.67356 1.14871 1.19067 0.97148 0.95916 0.74766 1.21267 0.92623 1.47525 0.96597 0.91911 1.24956 0.97857 0.94777 0.96468 1.69987 1.32137 1.44391 1.05755 0.86375 0.84006 0.77789 0.78818 1.19651 1.20825 1.20788 1.21051 1.01926 0.90227 0.90032 1.19448 0.92650 0.95108 0.99853 1.20760 0.97506 0.93343 1.01535 1.20997 0.96773 0.95127 1.06103 1.18240 0.91938 0.82947 1.01864 1.86158 1.32998 1.16568 1.86516 1.23049 0.84719 0.98301 1.00779 1.18230 0.85346 0.89985 1.01207 1.86149 1.15400 1.35254 1.85446 1.23068 0.85321 0.97421 1.01092 1.20884 1.00068 0.91223 1.04302 0.91421 0.92641 0.93698 0.88943 0.95545 0.88318 0.92578 0.77928 0.95683 0.95596 0.92527 0.93672 0.89691 0.85732 0.84836 0.92866 0.92580 0.88363 0.92865 0.88370 0.92292 0.84660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.96 37.15 0.37 -1.30 16 2 C 0.05 0.67 5.18 -3.83 -0.02 0.65 16 3 N -0.51 -7.15 4.09 -237.53 -0.97 -8.12 16 4 C 0.03 0.48 5.27 -4.98 -0.03 0.45 16 5 C 0.50 9.98 7.34 -10.99 -0.08 9.90 16 6 O -0.54 -12.82 14.54 5.56 0.08 -12.74 16 7 N -0.72 -15.12 5.55 -61.47 -0.34 -15.46 16 8 C 0.25 6.72 5.43 -5.20 -0.03 6.69 16 9 C -0.54 -14.75 9.28 -34.44 -0.32 -15.07 16 10 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 13 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 14 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 17 C 0.09 1.03 4.94 -4.98 -0.02 1.00 16 18 C -0.07 -0.81 5.04 -104.61 -0.53 -1.33 16 19 C -0.11 -1.22 8.39 -39.57 -0.33 -1.55 16 20 C -0.17 -1.88 9.04 -39.46 -0.36 -2.23 16 21 C 0.10 1.24 6.70 -39.12 -0.26 0.97 16 22 O -0.31 -3.89 10.28 -34.24 -0.35 -4.24 16 23 C 0.03 0.21 9.81 101.05 0.99 1.21 16 24 C 0.10 1.30 6.70 -39.12 -0.26 1.04 16 25 O -0.31 -4.04 10.28 -34.24 -0.35 -4.39 16 26 C 0.03 0.23 9.81 101.05 0.99 1.23 16 27 C -0.15 -1.76 8.71 -39.46 -0.34 -2.10 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.04 0.44 6.91 -51.92 -0.36 0.09 16 31 H 0.09 1.57 5.85 -51.93 -0.30 1.26 16 32 H 0.03 0.31 8.00 -51.93 -0.42 -0.11 16 33 H 0.10 1.33 6.32 -51.93 -0.33 1.00 16 34 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 35 H 0.39 7.01 8.32 -40.82 -0.34 6.67 16 36 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.05 0.43 7.90 -51.93 -0.41 0.02 16 40 H 0.08 0.82 6.56 -51.93 -0.34 0.48 16 41 H 0.12 1.10 7.98 -52.49 -0.42 0.68 16 42 H 0.13 1.14 6.30 -52.48 -0.33 0.81 16 43 H 0.05 0.34 7.68 -51.93 -0.40 -0.05 16 44 H 0.06 0.42 7.65 -51.93 -0.40 0.02 16 45 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 47 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.06 0.53 7.66 -51.93 -0.40 0.14 16 49 H 0.14 1.45 6.30 -52.49 -0.33 1.12 16 LS Contribution 399.91 15.07 6.03 6.03 Total: -1.00 -34.65 399.91 -8.18 -42.83 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -7.66 Total: 4.51 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -0.33 Total: 1.20 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -0.58 Total: -49.07 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.62 Total: -21.37 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.65 -8.18 -42.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025358239.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.768 kcal (2) G-P(sol) polarization free energy of solvation -34.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds