Wall clock time and date at job start Sat Apr 11 2020 04:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46900 * 109.47254 * 2 1 4 4 C 1.46896 * 110.99972 * 199.98609 * 3 2 1 5 5 C 1.50699 * 109.47116 * 66.04794 * 4 3 2 6 6 O 1.21280 * 120.00280 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00337 * 179.97438 * 5 4 3 8 8 C 1.46496 * 120.00476 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.47272 * 180.02562 * 8 7 5 10 10 H 1.07998 * 120.00277 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99791 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00258 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99744 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47195 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46908 * 120.00575 * 13 11 9 16 16 H 1.48503 * 109.47099 * 240.00167 * 13 11 9 17 17 C 1.46895 * 110.99865 * 76.03218 * 3 2 1 18 18 C 1.50705 * 109.47150 * 199.69028 * 17 3 2 19 19 C 1.38255 * 119.92405 * 264.49279 * 18 17 3 20 20 C 1.38243 * 120.14435 * 179.76791 * 19 18 17 21 21 C 1.38563 * 119.99761 * 0.46233 * 20 19 18 22 22 O 1.36000 * 120.07041 * 179.79419 * 21 20 19 23 23 C 1.42891 * 117.00176 * 359.72180 * 22 21 20 24 24 C 1.39152 * 119.85297 * 359.51365 * 21 20 19 25 25 O 1.36000 * 120.06931 * 180.23253 * 24 21 20 26 26 C 1.42899 * 116.99894 * 180.02562 * 25 24 21 27 27 C 1.38239 * 119.92622 * 84.46757 * 18 17 3 28 28 H 1.08998 * 109.47270 * 54.86755 * 1 2 3 29 29 H 1.09002 * 109.47124 * 174.87501 * 1 2 3 30 30 H 1.09010 * 109.47105 * 294.86592 * 1 2 3 31 31 H 1.09001 * 109.47139 * 240.00253 * 2 1 3 32 32 H 1.09003 * 109.47188 * 120.00172 * 2 1 3 33 33 H 1.08998 * 109.46918 * 186.04385 * 4 3 2 34 34 H 1.08994 * 109.47529 * 306.04653 * 4 3 2 35 35 H 0.97006 * 119.99467 * 0.02562 * 7 5 4 36 36 H 1.08998 * 109.47202 * 300.00409 * 8 7 5 37 37 H 1.09003 * 109.46542 * 60.00588 * 8 7 5 38 38 H 0.97003 * 119.99861 * 180.02562 * 12 11 9 39 39 H 1.08998 * 109.47297 * 79.68961 * 17 3 2 40 40 H 1.08999 * 109.47358 * 319.69112 * 17 3 2 41 41 H 1.08001 * 119.93020 * 0.02562 * 19 18 17 42 42 H 1.08003 * 119.99782 * 180.22991 * 20 19 18 43 43 H 1.09003 * 109.47198 * 299.99783 * 23 22 21 44 44 H 1.08997 * 109.47222 * 59.99952 * 23 22 21 45 45 H 1.08999 * 109.47230 * 180.02562 * 23 22 21 46 46 H 1.09001 * 109.47605 * 59.99639 * 26 25 24 47 47 H 1.09002 * 109.47217 * 179.97438 * 26 25 24 48 48 H 1.09001 * 109.46994 * 299.99809 * 26 25 24 49 49 H 1.07994 * 120.00440 * 0.02625 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4102 1.4517 -0.4687 5 6 3.4710 1.0500 -1.9199 6 8 2.4559 0.7383 -2.5059 7 7 4.6533 1.0370 -2.5667 8 6 4.7125 0.6460 -3.9773 9 6 6.1390 0.7145 -4.4582 10 1 6.9233 1.0185 -3.7808 11 6 6.4430 0.3891 -5.7631 12 7 5.4880 0.0194 -6.5882 13 14 8.2115 0.4733 -6.3590 14 1 9.0889 0.9130 -5.2446 15 1 8.6408 -0.8692 -6.8264 16 1 8.3105 1.4426 -7.4797 17 6 1.8830 1.9916 1.3308 18 6 1.9237 3.4929 1.2052 19 6 3.1152 4.1686 1.3929 20 6 3.1587 5.5452 1.2740 21 6 2.0046 6.2517 0.9756 22 8 2.0449 7.6063 0.8624 23 6 3.3101 8.2373 1.0700 24 6 0.8056 5.5714 0.7861 25 8 -0.3288 6.2599 0.4884 26 6 -1.5229 5.4960 0.3080 27 6 0.7698 4.1911 0.9020 28 1 -0.3634 0.5914 -0.8404 29 1 -0.3633 -1.0236 -0.0918 30 1 -0.3634 0.4322 0.9325 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.7825 2.4701 -0.3578 34 1 4.0258 0.7734 0.1221 35 1 5.4653 1.2859 -2.0979 36 1 4.3407 -0.3727 -4.0878 37 1 4.0965 1.3238 -4.5683 38 1 5.7019 -0.2099 -7.5061 39 1 2.7020 1.6580 1.9680 40 1 0.9332 1.6896 1.7721 41 1 4.0148 3.6195 1.6288 42 1 4.0915 6.0704 1.4175 43 1 3.6652 8.0169 2.0767 44 1 4.0277 7.8611 0.3410 45 1 3.2022 9.3155 0.9512 46 1 -1.7450 4.9473 1.2233 47 1 -2.3511 6.1656 0.0761 48 1 -1.3835 4.7922 -0.5127 49 1 -0.1596 3.6609 0.7559 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025358239.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:43 Heat of formation + Delta-G solvation = -102.642900 kcal Electronic energy + Delta-G solvation = -29304.871493 eV Core-core repulsion = 25232.081261 eV Total energy + Delta-G solvation = -4072.790232 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.56097 -40.69889 -39.37838 -38.82220 -37.22197 -36.01422 -34.33134 -32.53592 -31.74259 -31.21199 -29.74116 -28.67297 -28.06729 -27.49423 -25.54687 -24.36479 -23.12384 -22.76958 -21.83658 -21.16579 -19.37235 -18.97728 -18.09378 -17.73945 -17.49780 -17.12678 -16.99930 -16.59566 -16.43121 -16.12174 -15.96589 -15.69603 -15.58810 -15.35540 -15.20031 -14.58747 -14.41571 -14.25133 -14.16694 -13.89503 -13.50599 -13.41685 -13.12740 -12.95448 -12.87862 -12.76339 -12.74588 -12.66045 -12.28217 -12.21325 -12.05950 -12.03324 -11.90715 -11.83379 -11.64527 -11.44711 -10.80583 -10.59136 -9.77143 -9.63218 -9.22680 -8.73045 -8.28821 -6.45297 0.33822 0.43939 1.42958 1.44207 1.57628 1.84817 2.28846 2.39023 2.39960 2.46689 2.74866 3.06126 3.21201 3.76379 3.89107 3.98074 4.10009 4.17190 4.23268 4.23797 4.34200 4.38897 4.42158 4.42882 4.44077 4.47632 4.53955 4.61832 4.67731 4.70384 4.72769 4.75577 4.82730 5.00202 5.12388 5.17710 5.19040 5.25760 5.31136 5.41544 5.50854 5.61403 5.72727 5.75989 5.86346 6.04184 6.13785 6.19607 6.64749 6.66599 6.98661 7.24579 7.57291 8.83620 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010330 B = 0.002815 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.826287 B = 9943.932815 C =11452.103287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.051 3.949 3 N -0.535 5.535 4 C 0.049 3.951 5 C 0.493 3.507 6 O -0.582 6.582 7 N -0.711 5.711 8 C 0.270 3.730 9 C -0.553 4.553 10 H 0.084 0.916 11 C 0.002 3.998 12 N -0.932 5.932 13 Si 0.984 3.016 14 H -0.251 1.251 15 H -0.279 1.279 16 H -0.280 1.280 17 C 0.100 3.900 18 C -0.080 4.080 19 C -0.113 4.113 20 C -0.172 4.172 21 C 0.075 3.925 22 O -0.335 6.335 23 C 0.019 3.981 24 C 0.071 3.929 25 O -0.333 6.333 26 C 0.021 3.979 27 C -0.153 4.153 28 H 0.039 0.961 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.407 0.593 36 H -0.014 1.014 37 H -0.018 1.018 38 H 0.268 0.732 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.151 0.849 42 H 0.157 0.843 43 H 0.070 0.930 44 H 0.060 0.940 45 H 0.114 0.886 46 H 0.068 0.932 47 H 0.117 0.883 48 H 0.052 0.948 49 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.767 10.493 23.930 26.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.076 4.076 3 N -0.260 5.260 4 C -0.082 4.082 5 C 0.280 3.720 6 O -0.462 6.462 7 N -0.362 5.362 8 C 0.147 3.853 9 C -0.591 4.591 10 H 0.102 0.898 11 C -0.197 4.197 12 N -0.571 5.571 13 Si 0.808 3.192 14 H -0.175 1.175 15 H -0.205 1.205 16 H -0.206 1.206 17 C -0.026 4.026 18 C -0.081 4.081 19 C -0.131 4.131 20 C -0.190 4.190 21 C 0.030 3.970 22 O -0.250 6.250 23 C -0.076 4.076 24 C 0.026 3.974 25 O -0.248 6.248 26 C -0.073 4.073 27 C -0.172 4.172 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.134 0.866 34 H 0.107 0.893 35 H 0.242 0.758 36 H 0.004 0.996 37 H 0.000 1.000 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.116 0.884 41 H 0.169 0.831 42 H 0.175 0.825 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.132 0.868 46 H 0.087 0.913 47 H 0.135 0.865 48 H 0.070 0.930 49 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.002 10.807 22.943 26.310 hybrid contribution 1.300 -0.612 -0.466 1.511 sum -5.702 10.195 22.477 25.331 Atomic orbital electron populations 1.21649 0.94137 1.01592 1.01814 1.22115 0.97159 0.87859 1.00480 1.61539 1.18765 1.19560 1.26152 1.21952 0.91608 1.04193 0.90467 1.21382 0.82937 0.77234 0.90479 1.90626 1.35589 1.50030 1.69969 1.46190 1.09508 1.67686 1.12866 1.18468 0.96565 0.92644 0.77623 1.21655 0.92914 1.47263 0.97286 0.89763 1.26083 1.03015 0.93975 0.96660 1.70152 1.35077 1.45516 1.06313 0.85115 0.77778 0.77795 0.78552 1.17471 1.20451 1.20573 1.21098 1.03703 0.89292 0.88497 1.19646 0.92774 0.95652 1.00009 1.21102 0.98126 0.93403 1.00495 1.21308 0.97043 0.95480 1.05208 1.18595 0.92605 0.83401 1.02445 1.86117 1.35412 1.16692 1.86753 1.23319 0.83375 0.98987 1.01889 1.18577 0.85798 0.90701 1.02290 1.86104 1.16359 1.36628 1.85704 1.23268 0.84619 0.97794 1.01631 1.21048 1.00862 0.90981 1.04303 0.94177 0.91836 0.91091 0.93019 0.92854 0.86572 0.89281 0.75766 0.99612 1.00005 0.92315 0.91132 0.88368 0.83108 0.82528 0.91194 0.92128 0.86769 0.91332 0.86517 0.92955 0.84104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 9.96 71.98 0.72 -2.37 16 2 C 0.05 1.33 5.18 86.30 0.45 1.77 16 3 N -0.54 -13.85 4.09 -905.40 -3.70 -17.55 16 4 C 0.05 1.30 5.27 85.56 0.45 1.75 16 5 C 0.49 19.83 7.34 87.66 0.64 20.47 16 6 O -0.58 -29.03 14.54 -3.03 -0.04 -29.07 16 7 N -0.71 -30.20 5.55 -466.80 -2.59 -32.79 16 8 C 0.27 15.01 5.43 85.63 0.46 15.48 16 9 C -0.55 -30.25 9.28 25.60 0.24 -30.01 16 10 H 0.08 4.14 7.60 -2.91 -0.02 4.12 16 11 C 0.00 0.11 5.46 84.65 0.46 0.58 16 12 N -0.93 -56.80 13.29 21.45 0.28 -56.51 16 13 Si 0.98 42.44 29.54 68.60 2.03 44.46 16 14 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 15 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 16 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 17 C 0.10 1.83 4.94 85.56 0.42 2.25 16 18 C -0.08 -1.67 5.04 -19.86 -0.10 -1.77 16 19 C -0.11 -2.09 8.39 22.27 0.19 -1.90 16 20 C -0.17 -3.41 9.04 22.35 0.20 -3.21 16 21 C 0.07 1.90 6.70 22.57 0.15 2.05 16 22 O -0.34 -8.37 10.28 -79.69 -0.82 -9.19 16 23 C 0.02 0.27 9.81 113.37 1.11 1.38 16 24 C 0.07 1.91 6.70 22.57 0.15 2.06 16 25 O -0.33 -8.93 10.28 -79.68 -0.82 -9.75 16 26 C 0.02 0.38 9.81 113.37 1.11 1.50 16 27 C -0.15 -3.57 8.71 22.35 0.19 -3.38 16 28 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 1.24 6.91 -2.38 -0.02 1.22 16 31 H 0.05 1.78 5.85 -2.39 -0.01 1.76 16 32 H 0.05 1.09 8.00 -2.39 -0.02 1.07 16 33 H 0.12 2.74 6.32 -2.39 -0.02 2.73 16 34 H 0.09 1.85 8.12 -2.39 -0.02 1.83 16 35 H 0.41 14.08 8.32 -92.70 -0.77 13.31 16 36 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 37 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 38 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 39 H 0.07 0.97 7.90 -2.39 -0.02 0.95 16 40 H 0.10 1.54 6.56 -2.39 -0.02 1.52 16 41 H 0.15 1.94 7.98 -2.91 -0.02 1.92 16 42 H 0.16 2.22 6.30 -2.91 -0.02 2.20 16 43 H 0.07 0.76 7.68 -2.39 -0.02 0.75 16 44 H 0.06 0.81 7.65 -2.39 -0.02 0.79 16 45 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.07 0.98 7.66 -2.39 -0.02 0.96 16 47 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.05 0.98 7.66 -2.39 -0.02 0.96 16 49 H 0.14 2.95 6.30 -2.91 -0.02 2.93 16 Total: -1.00 -80.08 399.91 1.38 -78.70 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: 0.19 Total: 25.06 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 6.86 Total: 6.64 kcal Atomic # 7 Polarization: -100.85 SS G_CDS: -6.01 Total: -106.85 kcal Atomic # 8 Polarization: -46.33 SS G_CDS: -1.68 Total: -48.01 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -80.08 1.38 -78.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025358239.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.947 kcal (2) G-P(sol) polarization free energy of solvation -80.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds