Wall clock time and date at job start Sat Apr 11 2020 04:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46508 * 109.46822 * 2 1 4 4 C 1.34772 * 119.99720 * 179.97438 * 3 2 1 5 5 O 1.21281 * 120.00470 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00065 * 180.02562 * 4 3 2 7 7 N 1.46897 * 109.47615 * 180.02562 * 6 4 3 8 8 C 1.46902 * 110.99992 * 66.04255 * 7 6 4 9 9 C 1.46902 * 111.00395 * 190.00083 * 7 6 4 10 10 C 1.53000 * 109.47097 * 169.99719 * 9 7 6 11 11 H 1.08999 * 109.46940 * 60.00499 * 10 9 7 12 12 O 1.42902 * 109.47115 * 300.00204 * 10 9 7 13 13 C 1.52998 * 109.46887 * 180.02562 * 10 9 7 14 14 O 1.42895 * 109.46913 * 185.00078 * 13 10 9 15 15 C 1.35683 * 116.99974 * 180.02562 * 14 13 10 16 16 C 1.39310 * 119.81329 * 359.72235 * 15 14 13 17 17 C 1.36441 * 120.18083 * 179.76069 * 16 15 14 18 18 C 1.40831 * 119.81048 * 0.51619 * 17 16 15 19 19 C 1.41215 * 120.17925 * 179.71659 * 18 17 16 20 20 H 1.08006 * 119.99889 * 24.57267 * 19 18 17 21 21 C 1.39891 * 120.00461 * 204.56900 * 19 18 17 22 22 N 1.30880 * 119.99436 * 17.93843 * 21 19 18 23 23 Si 1.86794 * 120.00456 * 197.93457 * 21 19 18 24 24 H 1.48501 * 109.47280 * 59.99968 * 23 21 19 25 25 H 1.48501 * 109.47373 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47144 * 300.00363 * 23 21 19 27 27 C 1.40832 * 119.64547 * 359.74003 * 18 17 16 28 28 C 1.36435 * 119.80895 * 359.97438 * 27 18 17 29 29 H 1.09002 * 109.47265 * 300.00055 * 1 2 3 30 30 H 1.08999 * 109.47048 * 60.00090 * 1 2 3 31 31 H 1.08999 * 109.46676 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47409 * 240.00354 * 2 1 3 33 33 H 1.08999 * 109.47048 * 119.99910 * 2 1 3 34 34 H 0.96995 * 119.99798 * 359.97438 * 3 2 1 35 35 H 1.09002 * 109.47082 * 60.00030 * 6 4 3 36 36 H 1.08999 * 109.47055 * 300.00103 * 6 4 3 37 37 H 1.08997 * 109.46672 * 60.00707 * 8 7 6 38 38 H 1.08995 * 109.46744 * 180.02562 * 8 7 6 39 39 H 1.08999 * 109.47161 * 300.00646 * 8 7 6 40 40 H 1.08996 * 109.46791 * 290.00085 * 9 7 6 41 41 H 1.09004 * 109.46555 * 49.99743 * 9 7 6 42 42 H 0.96701 * 113.99507 * 299.99747 * 12 10 9 43 43 H 1.09000 * 109.46902 * 305.00322 * 13 10 9 44 44 H 1.09008 * 109.47091 * 65.00116 * 13 10 9 45 45 H 1.07995 * 119.91318 * 0.02562 * 16 15 14 46 46 H 1.08002 * 120.09395 * 180.25658 * 17 16 15 47 47 H 0.97007 * 120.00222 * 179.97438 * 22 21 19 48 48 H 1.07994 * 120.09931 * 179.97438 * 27 18 17 49 49 H 1.08000 * 119.90954 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6276 0.0005 5 8 4.1316 0.7058 0.0005 6 6 3.8457 3.0484 0.0011 7 7 5.3147 3.0485 0.0010 8 6 5.8411 2.4922 -1.2526 9 6 5.8411 4.3990 0.2397 10 6 7.3501 4.3230 0.4805 11 1 7.8366 3.8929 -0.3950 12 8 7.6097 3.5020 1.6211 13 6 7.8983 5.7295 0.7298 14 8 9.3220 5.6733 0.8390 15 6 9.9692 6.8446 1.0629 16 6 9.2423 8.0283 1.1693 17 6 9.8851 9.2097 1.3991 18 6 11.2882 9.2317 1.5180 19 6 11.9620 10.4509 1.7500 20 1 11.4436 11.2733 2.2206 21 6 13.3008 10.5935 1.3704 22 7 13.8277 9.7642 0.5058 23 14 14.3365 11.9676 2.0973 24 1 14.3965 11.8146 3.5732 25 1 15.7099 11.9023 1.5362 26 1 13.7263 13.2788 1.7601 27 6 12.0159 8.0314 1.4038 28 6 11.3574 6.8577 1.1797 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.3880 2.1185 -0.0004 35 1 3.4821 3.5620 0.8911 36 1 3.4827 3.5625 -0.8888 37 1 5.4915 3.0935 -2.0919 38 1 6.9306 2.5037 -1.2259 39 1 5.4916 1.4665 -1.3700 40 1 5.6431 5.0251 -0.6302 41 1 5.3546 4.8290 1.1152 42 1 7.2062 3.8252 2.4383 43 1 7.6229 6.3792 -0.1009 44 1 7.4782 6.1245 1.6548 45 1 8.1668 8.0102 1.0738 46 1 9.3198 10.1259 1.4855 47 1 14.7560 9.8632 0.2422 48 1 13.0921 8.0399 1.4934 49 1 11.9139 5.9363 1.0915 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052188439.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:47 Heat of formation + Delta-G solvation = -96.347113 kcal Electronic energy + Delta-G solvation = -27909.378314 eV Core-core repulsion = 23836.861088 eV Total energy + Delta-G solvation = -4072.517226 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.21526 -39.08734 -38.00963 -36.49940 -35.78698 -35.32019 -33.30180 -31.49479 -30.71435 -29.64485 -28.99621 -28.22387 -26.82405 -24.77744 -23.90506 -22.76592 -21.43358 -20.80343 -20.61511 -20.52264 -17.63362 -17.34654 -16.90868 -16.60972 -16.48008 -16.16334 -16.11036 -15.39318 -15.21641 -15.10719 -14.62554 -14.25700 -14.07721 -13.91766 -13.80703 -13.36298 -13.14304 -12.93650 -12.78146 -12.34133 -12.32768 -12.23212 -12.12426 -11.99893 -11.95009 -11.67745 -11.63239 -11.36707 -11.10938 -10.93384 -10.74470 -10.61008 -10.12432 -9.97584 -9.82491 -9.78545 -9.46418 -9.31751 -9.00512 -8.54348 -7.63069 -7.01877 -6.71171 -4.24490 2.34891 2.64240 2.80137 2.96270 3.08722 3.10992 3.23386 3.50029 3.95859 4.09805 4.34122 4.52281 4.56702 4.58760 4.63312 4.74956 4.82757 4.84498 4.90843 5.00000 5.17329 5.24565 5.32016 5.35181 5.39993 5.41706 5.47930 5.53504 5.63166 5.68275 5.91041 6.03627 6.06676 6.11600 6.24289 6.61241 6.71083 6.76180 6.98788 7.12134 7.12555 7.19652 7.47885 7.56940 7.80078 7.83830 7.93612 8.01484 8.21771 8.46824 8.66582 8.90894 9.00026 10.23260 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.046422 B = 0.001545 C = 0.001522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.019248 B =18116.278856 C =18396.134565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.738 5.738 4 C 0.512 3.488 5 O -0.515 6.515 6 C 0.035 3.965 7 N -0.512 5.512 8 C 0.015 3.985 9 C 0.026 3.974 10 C 0.116 3.884 11 H 0.105 0.895 12 O -0.536 6.536 13 C 0.039 3.961 14 O -0.316 6.316 15 C -0.009 4.009 16 C -0.168 4.168 17 C -0.199 4.199 18 C 0.088 3.912 19 C -0.465 4.465 20 H 0.076 0.924 21 C 0.075 3.925 22 N -0.799 5.799 23 Si 0.907 3.093 24 H -0.264 1.264 25 H -0.279 1.279 26 H -0.267 1.267 27 C -0.133 4.133 28 C -0.119 4.119 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.399 0.601 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.020 0.980 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.047 0.953 41 H 0.081 0.919 42 H 0.369 0.631 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.281 0.719 48 H 0.126 0.874 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.980 -12.573 -2.348 27.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.009 4.009 3 N -0.392 5.392 4 C 0.298 3.702 5 O -0.389 6.389 6 C -0.096 4.096 7 N -0.236 5.236 8 C -0.133 4.133 9 C -0.102 4.102 10 C 0.056 3.944 11 H 0.123 0.877 12 O -0.340 6.340 13 C -0.039 4.039 14 O -0.232 6.232 15 C -0.052 4.052 16 C -0.187 4.187 17 C -0.219 4.219 18 C 0.086 3.914 19 C -0.495 4.495 20 H 0.094 0.906 21 C -0.141 4.141 22 N -0.425 5.425 23 Si 0.732 3.268 24 H -0.189 1.189 25 H -0.204 1.204 26 H -0.191 1.191 27 C -0.152 4.152 28 C -0.138 4.138 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.233 0.767 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.038 0.962 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.066 0.934 41 H 0.100 0.900 42 H 0.216 0.784 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.110 0.890 46 H 0.112 0.888 47 H 0.091 0.909 48 H 0.143 0.857 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -22.587 -14.148 -2.569 26.776 hybrid contribution -0.712 2.220 -0.114 2.334 sum -23.299 -11.928 -2.683 26.313 Atomic orbital electron populations 1.22007 0.94437 1.03304 1.02503 1.21276 0.94150 0.82971 1.02472 1.46066 1.07164 1.08941 1.77069 1.20582 0.81965 0.91623 0.76074 1.90712 1.54840 1.46105 1.47242 1.21991 0.90390 0.94084 1.03127 1.61510 1.04305 1.21230 1.36513 1.22642 1.01605 1.01194 0.87819 1.22785 0.96585 0.89229 1.01633 1.21851 0.91913 0.89621 0.91005 0.87708 1.86666 1.77286 1.51869 1.18152 1.23109 0.82953 0.97056 1.00754 1.85896 1.17477 1.30609 1.89203 1.18633 0.91715 0.83639 1.11214 1.20384 0.97197 0.93272 1.07864 1.20545 0.94999 0.95579 1.10764 1.17591 0.90793 0.93216 0.89844 1.19425 0.95468 0.98977 1.35606 0.90619 1.25870 0.98299 0.97039 0.92935 1.69827 1.14802 1.34914 1.22932 0.86387 0.78623 0.81332 0.80460 1.18876 1.20382 1.19131 1.20980 1.00036 0.90510 1.03700 1.19850 0.90491 0.98138 1.05272 0.91923 0.92010 0.90759 0.91591 0.91445 0.76714 0.87832 0.91974 0.96159 0.90593 0.89462 0.93440 0.90011 0.78436 0.92612 0.92901 0.88989 0.88811 0.90858 0.85670 0.88408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.49 10.03 37.16 0.37 -0.12 16 2 C 0.11 0.67 6.39 -4.04 -0.03 0.64 16 3 N -0.74 -4.41 5.56 -60.29 -0.33 -4.75 16 4 C 0.51 4.79 7.55 -10.99 -0.08 4.71 16 5 O -0.51 -7.16 14.31 5.56 0.08 -7.08 16 6 C 0.04 0.27 5.45 -4.98 -0.03 0.24 16 7 N -0.51 -5.44 4.37 -244.37 -1.07 -6.51 16 8 C 0.01 0.17 9.01 60.07 0.54 0.71 16 9 C 0.03 0.25 4.62 -3.82 -0.02 0.23 16 10 C 0.12 1.52 3.13 -26.73 -0.08 1.44 16 11 H 0.11 1.49 6.47 -51.93 -0.34 1.15 16 12 O -0.54 -7.89 13.17 -40.11 -0.53 -8.42 16 13 C 0.04 0.59 4.36 37.16 0.16 0.75 16 14 O -0.32 -6.59 10.09 -23.63 -0.24 -6.82 16 15 C -0.01 -0.21 6.71 -38.78 -0.26 -0.47 16 16 C -0.17 -3.80 8.96 -39.83 -0.36 -4.16 16 17 C -0.20 -4.90 9.74 -39.25 -0.38 -5.28 16 18 C 0.09 2.36 5.57 -106.81 -0.60 1.77 16 19 C -0.46 -12.39 9.04 -37.83 -0.34 -12.73 16 20 H 0.08 1.93 7.91 -52.48 -0.41 1.51 16 21 C 0.08 1.91 5.13 -17.34 -0.09 1.82 16 22 N -0.80 -20.82 10.96 55.54 0.61 -20.21 16 23 Si 0.91 18.75 29.60 -169.99 -5.03 13.72 16 24 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 25 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 26 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 27 C -0.13 -3.51 8.64 -39.25 -0.34 -3.85 16 28 C -0.12 -2.93 9.92 -39.83 -0.40 -3.33 16 29 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.40 1.18 8.47 -40.82 -0.35 0.84 16 35 H 0.10 0.58 7.93 -51.93 -0.41 0.17 16 36 H 0.06 0.36 8.12 -51.93 -0.42 -0.06 16 37 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.08 0.91 6.30 -51.93 -0.33 0.58 16 39 H 0.09 1.09 5.88 -51.93 -0.31 0.78 16 40 H 0.05 0.42 8.12 -51.93 -0.42 -0.01 16 41 H 0.08 0.66 7.93 -51.93 -0.41 0.25 16 42 H 0.37 4.17 9.04 45.56 0.41 4.58 16 43 H 0.06 0.81 7.64 -51.93 -0.40 0.42 16 44 H 0.05 0.75 7.66 -51.92 -0.40 0.36 16 45 H 0.09 1.77 6.27 -52.49 -0.33 1.44 16 46 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 47 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 48 H 0.13 3.38 6.16 -52.49 -0.32 3.06 16 49 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 400.81 15.07 6.04 6.04 Total: -1.00 -33.54 400.81 -9.34 -42.88 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -6.95 Total: 8.77 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -1.92 Total: -17.63 kcal Atomic # 7 Polarization: -30.67 SS G_CDS: -0.79 Total: -31.46 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.69 Total: -22.32 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.54 -9.34 -42.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052188439.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.464 kcal (2) G-P(sol) polarization free energy of solvation -33.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds