Wall clock time and date at job start Sat Apr 11 2020 04:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46508 * 109.46822 * 2 1 4 4 C 1.34772 * 119.99720 * 179.97438 * 3 2 1 5 5 O 1.21281 * 120.00470 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00065 * 180.02562 * 4 3 2 7 7 N 1.46897 * 109.47615 * 180.02562 * 6 4 3 8 8 C 1.46902 * 110.99992 * 66.04255 * 7 6 4 9 9 C 1.46902 * 111.00395 * 190.00083 * 7 6 4 10 10 C 1.53000 * 109.47097 * 169.99719 * 9 7 6 11 11 H 1.08999 * 109.46940 * 60.00499 * 10 9 7 12 12 O 1.42902 * 109.47115 * 300.00204 * 10 9 7 13 13 C 1.52998 * 109.46887 * 180.02562 * 10 9 7 14 14 O 1.42895 * 109.46913 * 185.00078 * 13 10 9 15 15 C 1.35683 * 116.99974 * 180.02562 * 14 13 10 16 16 C 1.39310 * 119.81329 * 359.72235 * 15 14 13 17 17 C 1.36441 * 120.18083 * 179.76069 * 16 15 14 18 18 C 1.40831 * 119.81048 * 0.51619 * 17 16 15 19 19 C 1.41215 * 120.17925 * 179.71659 * 18 17 16 20 20 H 1.08006 * 119.99889 * 24.57267 * 19 18 17 21 21 C 1.39891 * 120.00461 * 204.56900 * 19 18 17 22 22 N 1.30880 * 119.99436 * 17.93843 * 21 19 18 23 23 Si 1.86794 * 120.00456 * 197.93457 * 21 19 18 24 24 H 1.48501 * 109.47280 * 59.99968 * 23 21 19 25 25 H 1.48501 * 109.47373 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47144 * 300.00363 * 23 21 19 27 27 C 1.40832 * 119.64547 * 359.74003 * 18 17 16 28 28 C 1.36435 * 119.80895 * 359.97438 * 27 18 17 29 29 H 1.09002 * 109.47265 * 300.00055 * 1 2 3 30 30 H 1.08999 * 109.47048 * 60.00090 * 1 2 3 31 31 H 1.08999 * 109.46676 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47409 * 240.00354 * 2 1 3 33 33 H 1.08999 * 109.47048 * 119.99910 * 2 1 3 34 34 H 0.96995 * 119.99798 * 359.97438 * 3 2 1 35 35 H 1.09002 * 109.47082 * 60.00030 * 6 4 3 36 36 H 1.08999 * 109.47055 * 300.00103 * 6 4 3 37 37 H 1.08997 * 109.46672 * 60.00707 * 8 7 6 38 38 H 1.08995 * 109.46744 * 180.02562 * 8 7 6 39 39 H 1.08999 * 109.47161 * 300.00646 * 8 7 6 40 40 H 1.08996 * 109.46791 * 290.00085 * 9 7 6 41 41 H 1.09004 * 109.46555 * 49.99743 * 9 7 6 42 42 H 0.96701 * 113.99507 * 299.99747 * 12 10 9 43 43 H 1.09000 * 109.46902 * 305.00322 * 13 10 9 44 44 H 1.09008 * 109.47091 * 65.00116 * 13 10 9 45 45 H 1.07995 * 119.91318 * 0.02562 * 16 15 14 46 46 H 1.08002 * 120.09395 * 180.25658 * 17 16 15 47 47 H 0.97007 * 120.00222 * 179.97438 * 22 21 19 48 48 H 1.07994 * 120.09931 * 179.97438 * 27 18 17 49 49 H 1.08000 * 119.90954 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6276 0.0005 5 8 4.1316 0.7058 0.0005 6 6 3.8457 3.0484 0.0011 7 7 5.3147 3.0485 0.0010 8 6 5.8411 2.4922 -1.2526 9 6 5.8411 4.3990 0.2397 10 6 7.3501 4.3230 0.4805 11 1 7.8366 3.8929 -0.3950 12 8 7.6097 3.5020 1.6211 13 6 7.8983 5.7295 0.7298 14 8 9.3220 5.6733 0.8390 15 6 9.9692 6.8446 1.0629 16 6 9.2423 8.0283 1.1693 17 6 9.8851 9.2097 1.3991 18 6 11.2882 9.2317 1.5180 19 6 11.9620 10.4509 1.7500 20 1 11.4436 11.2733 2.2206 21 6 13.3008 10.5935 1.3704 22 7 13.8277 9.7642 0.5058 23 14 14.3365 11.9676 2.0973 24 1 14.3965 11.8146 3.5732 25 1 15.7099 11.9023 1.5362 26 1 13.7263 13.2788 1.7601 27 6 12.0159 8.0314 1.4038 28 6 11.3574 6.8577 1.1797 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.3880 2.1185 -0.0004 35 1 3.4821 3.5620 0.8911 36 1 3.4827 3.5625 -0.8888 37 1 5.4915 3.0935 -2.0919 38 1 6.9306 2.5037 -1.2259 39 1 5.4916 1.4665 -1.3700 40 1 5.6431 5.0251 -0.6302 41 1 5.3546 4.8290 1.1152 42 1 7.2062 3.8252 2.4383 43 1 7.6229 6.3792 -0.1009 44 1 7.4782 6.1245 1.6548 45 1 8.1668 8.0102 1.0738 46 1 9.3198 10.1259 1.4855 47 1 14.7560 9.8632 0.2422 48 1 13.0921 8.0399 1.4934 49 1 11.9139 5.9363 1.0915 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052188439.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:46 Heat of formation + Delta-G solvation = -121.995587 kcal Electronic energy + Delta-G solvation = -27910.490515 eV Core-core repulsion = 23836.861088 eV Total energy + Delta-G solvation = -4073.629427 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.95787 -40.58524 -39.18808 -37.97236 -36.78692 -36.08163 -35.16681 -32.27029 -31.81488 -31.25198 -30.79868 -28.90493 -27.89489 -26.53333 -24.81415 -23.50825 -22.75433 -22.34615 -21.95915 -21.41080 -19.24347 -18.77033 -18.10503 -17.51340 -17.39638 -17.12421 -17.00933 -16.85322 -16.12025 -16.02549 -15.77885 -15.65826 -15.36297 -15.07571 -14.79591 -14.73519 -14.17187 -14.06542 -13.95022 -13.82935 -13.56416 -13.29040 -13.01349 -12.85448 -12.79101 -12.75438 -12.69212 -12.65263 -12.52653 -12.34887 -12.26380 -11.85371 -11.66253 -11.57036 -11.24083 -11.00700 -10.85948 -10.70036 -10.06801 -9.55017 -9.25308 -8.91309 -8.58497 -6.21707 0.96555 1.04048 1.40357 1.51301 1.55633 1.67602 2.03811 2.23478 2.50006 2.73949 3.08767 3.58621 3.71513 3.81626 3.86319 4.02221 4.03661 4.17177 4.21032 4.27776 4.30503 4.33412 4.37522 4.40411 4.47515 4.52120 4.53626 4.59183 4.70659 4.87927 4.95081 4.99860 5.06155 5.07885 5.14112 5.22975 5.26722 5.29271 5.52265 5.60246 5.65365 5.89447 5.92725 5.98131 6.06800 6.27473 6.57929 6.62826 6.82255 6.93705 6.96106 7.12147 7.33836 8.37897 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.046422 B = 0.001545 C = 0.001522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.019248 B =18116.278856 C =18396.134565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.112 3.888 3 N -0.721 5.721 4 C 0.506 3.494 5 O -0.571 6.571 6 C 0.038 3.962 7 N -0.535 5.535 8 C 0.021 3.979 9 C 0.037 3.963 10 C 0.121 3.879 11 H 0.087 0.913 12 O -0.561 6.561 13 C 0.031 3.969 14 O -0.334 6.334 15 C 0.000 4.000 16 C -0.163 4.163 17 C -0.206 4.206 18 C 0.054 3.946 19 C -0.500 4.500 20 H 0.078 0.922 21 C 0.034 3.966 22 N -0.832 5.832 23 Si 0.982 3.018 24 H -0.261 1.261 25 H -0.270 1.270 26 H -0.258 1.258 27 C -0.153 4.153 28 C -0.136 4.136 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.417 0.583 35 H 0.131 0.869 36 H 0.089 0.911 37 H 0.037 0.963 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.107 0.893 42 H 0.383 0.617 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.133 0.867 46 H 0.108 0.892 47 H 0.287 0.713 48 H 0.108 0.892 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.843 -11.262 -2.121 29.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.012 4.012 3 N -0.376 5.376 4 C 0.293 3.707 5 O -0.449 6.449 6 C -0.092 4.092 7 N -0.259 5.259 8 C -0.127 4.127 9 C -0.091 4.091 10 C 0.061 3.939 11 H 0.105 0.895 12 O -0.367 6.367 13 C -0.045 4.045 14 O -0.249 6.249 15 C -0.044 4.044 16 C -0.182 4.182 17 C -0.226 4.226 18 C 0.052 3.948 19 C -0.530 4.530 20 H 0.096 0.904 21 C -0.180 4.180 22 N -0.459 5.459 23 Si 0.802 3.198 24 H -0.186 1.186 25 H -0.194 1.194 26 H -0.182 1.182 27 C -0.172 4.172 28 C -0.155 4.155 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.254 0.746 35 H 0.149 0.851 36 H 0.107 0.893 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.125 0.875 42 H 0.231 0.769 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.151 0.849 46 H 0.126 0.874 47 H 0.097 0.903 48 H 0.126 0.874 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -25.531 -12.825 -2.341 28.667 hybrid contribution 0.006 1.643 -0.217 1.658 sum -25.525 -11.182 -2.558 27.984 Atomic orbital electron populations 1.21946 0.91844 1.04052 1.03393 1.21308 0.96167 0.82683 1.01044 1.45974 1.06586 1.09709 1.75345 1.21049 0.82479 0.92001 0.75205 1.90698 1.56372 1.47767 1.50071 1.22089 0.88442 0.93108 1.05598 1.61385 1.06382 1.21852 1.36292 1.22485 1.00504 1.00633 0.89057 1.22666 0.93773 0.89158 1.03473 1.21828 0.94300 0.87849 0.89923 0.89531 1.86634 1.78034 1.52705 1.19339 1.23497 0.79836 0.98984 1.02202 1.85890 1.20797 1.29433 1.88829 1.18705 0.91461 0.84886 1.09337 1.20707 0.99202 0.92019 1.06242 1.20816 0.94365 0.97082 1.10348 1.17958 0.92247 0.93544 0.91092 1.19701 0.96901 0.99272 1.37125 0.90429 1.26739 0.98998 0.99601 0.92680 1.69893 1.15425 1.36713 1.23891 0.85261 0.76956 0.78104 0.79430 1.18574 1.19449 1.18247 1.20882 0.99439 0.91376 1.05525 1.20006 0.91876 0.97856 1.05770 0.91017 0.91010 0.90163 0.92992 0.93083 0.74622 0.85120 0.89320 0.94458 0.92349 0.91394 0.91714 0.87473 0.76853 0.91175 0.91038 0.84943 0.87394 0.90258 0.87406 0.87893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 10.03 71.98 0.72 0.11 16 2 C 0.11 1.22 6.39 86.38 0.55 1.77 16 3 N -0.72 -7.36 5.56 -463.05 -2.57 -9.94 16 4 C 0.51 8.83 7.55 87.66 0.66 9.49 16 5 O -0.57 -16.16 14.31 -3.03 -0.04 -16.20 16 6 C 0.04 0.46 5.45 85.56 0.47 0.93 16 7 N -0.53 -10.25 4.37 -927.06 -4.05 -14.30 16 8 C 0.02 0.46 9.01 127.69 1.15 1.61 16 9 C 0.04 0.60 4.62 86.30 0.40 1.00 16 10 C 0.12 2.94 3.13 30.59 0.10 3.04 16 11 H 0.09 2.42 6.47 -2.39 -0.02 2.40 16 12 O -0.56 -15.87 13.17 -144.32 -1.90 -17.77 16 13 C 0.03 0.86 4.36 71.98 0.31 1.18 16 14 O -0.33 -13.46 10.09 -85.35 -0.86 -14.32 16 15 C 0.00 0.00 6.71 22.79 0.15 0.15 16 16 C -0.16 -7.03 8.96 22.11 0.20 -6.84 16 17 C -0.21 -10.02 9.74 22.48 0.22 -9.80 16 18 C 0.05 2.94 5.57 -21.28 -0.12 2.82 16 19 C -0.50 -27.17 9.04 23.40 0.21 -26.96 16 20 H 0.08 4.01 7.91 -2.91 -0.02 3.99 16 21 C 0.03 1.72 5.13 85.24 0.44 2.16 16 22 N -0.83 -44.51 10.96 21.82 0.24 -44.27 16 23 Si 0.98 38.59 29.60 68.60 2.03 40.62 16 24 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 25 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 26 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 27 C -0.15 -8.35 8.64 22.48 0.19 -8.16 16 28 C -0.14 -6.87 9.92 22.11 0.22 -6.65 16 29 H 0.07 0.18 8.14 -2.39 -0.02 0.17 16 30 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.42 1.22 8.47 -92.71 -0.79 0.44 16 35 H 0.13 0.87 7.93 -2.39 -0.02 0.85 16 36 H 0.09 0.64 8.12 -2.39 -0.02 0.62 16 37 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.06 1.42 6.30 -2.39 -0.02 1.41 16 39 H 0.07 1.74 5.88 -2.39 -0.01 1.73 16 40 H 0.06 0.85 8.12 -2.39 -0.02 0.83 16 41 H 0.11 1.20 7.93 -2.38 -0.02 1.18 16 42 H 0.38 7.95 9.04 -74.06 -0.67 7.28 16 43 H 0.07 1.78 7.64 -2.39 -0.02 1.76 16 44 H 0.07 1.75 7.66 -2.38 -0.02 1.73 16 45 H 0.13 4.55 6.27 -2.91 -0.02 4.53 16 46 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 47 H 0.29 13.94 8.30 -92.70 -0.77 13.17 16 48 H 0.11 6.14 6.16 -2.91 -0.02 6.12 16 49 H 0.10 4.91 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -76.04 400.81 -1.76 -77.80 By element: Atomic # 1 Polarization: 33.01 SS G_CDS: -0.48 Total: 32.53 kcal Atomic # 6 Polarization: -40.03 SS G_CDS: 5.88 Total: -34.15 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: -6.38 Total: -68.51 kcal Atomic # 8 Polarization: -45.49 SS G_CDS: -2.80 Total: -48.29 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 2.03 Total: 40.62 kcal Total: -76.04 -1.76 -77.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052188439.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.195 kcal (2) G-P(sol) polarization free energy of solvation -76.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds