Wall clock time and date at job start Sat Apr 11 2020 04:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47033 * 2 1 4 4 C 1.34783 * 119.99760 * 179.97438 * 3 2 1 5 5 O 1.21282 * 120.00190 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99873 * 179.97438 * 4 3 2 7 7 N 1.46900 * 109.47399 * 180.02562 * 6 4 3 8 8 C 1.46900 * 110.99619 * 293.95645 * 7 6 4 9 9 C 1.46893 * 110.99987 * 170.00000 * 7 6 4 10 10 C 1.53006 * 109.46666 * 189.99941 * 9 7 6 11 11 H 1.09001 * 109.47051 * 304.99405 * 10 9 7 12 12 O 1.42893 * 109.47364 * 65.00147 * 10 9 7 13 13 C 1.53009 * 109.46831 * 184.99889 * 10 9 7 14 14 O 1.42897 * 109.46921 * 174.99581 * 13 10 9 15 15 C 1.35675 * 117.00125 * 180.02562 * 14 13 10 16 16 C 1.39313 * 119.81487 * 359.72422 * 15 14 13 17 17 C 1.36440 * 120.18365 * 179.75720 * 16 15 14 18 18 C 1.40831 * 119.81045 * 0.52339 * 17 16 15 19 19 C 1.41217 * 120.17778 * 179.71623 * 18 17 16 20 20 H 1.08004 * 120.00061 * 24.56411 * 19 18 17 21 21 C 1.39890 * 120.00032 * 204.56166 * 19 18 17 22 22 N 1.30886 * 119.99515 * 17.94615 * 21 19 18 23 23 Si 1.86792 * 120.00234 * 197.94283 * 21 19 18 24 24 H 1.48504 * 109.46983 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47133 * 119.99688 * 23 21 19 26 26 H 1.48495 * 109.47273 * 240.00309 * 23 21 19 27 27 C 1.40834 * 119.64137 * 359.73552 * 18 17 16 28 28 C 1.36430 * 119.81194 * 0.02562 * 27 18 17 29 29 H 1.08995 * 109.47639 * 300.00318 * 1 2 3 30 30 H 1.09003 * 109.46993 * 60.00258 * 1 2 3 31 31 H 1.09000 * 109.46856 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47639 * 239.99682 * 2 1 3 33 33 H 1.09003 * 109.46993 * 119.99742 * 2 1 3 34 34 H 0.96995 * 120.00034 * 0.02562 * 3 2 1 35 35 H 1.08995 * 109.47106 * 60.00034 * 6 4 3 36 36 H 1.09003 * 109.46970 * 300.00435 * 6 4 3 37 37 H 1.09006 * 109.46768 * 296.04353 * 8 7 6 38 38 H 1.08997 * 109.47515 * 56.04039 * 8 7 6 39 39 H 1.09003 * 109.47131 * 176.04774 * 8 7 6 40 40 H 1.09002 * 109.47379 * 70.00184 * 9 7 6 41 41 H 1.08998 * 109.47532 * 309.99336 * 9 7 6 42 42 H 0.96701 * 113.99898 * 59.99440 * 12 10 9 43 43 H 1.09003 * 109.46699 * 55.00020 * 13 10 9 44 44 H 1.08999 * 109.47088 * 295.00279 * 13 10 9 45 45 H 1.08000 * 119.90714 * 0.02972 * 16 15 14 46 46 H 1.08007 * 120.09092 * 180.25554 * 17 16 15 47 47 H 0.96999 * 119.99379 * 180.02562 * 22 21 19 48 48 H 1.08000 * 120.09009 * 179.97438 * 27 18 17 49 49 H 1.08004 * 119.90814 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1316 0.7056 0.0005 6 6 3.8458 3.0483 -0.0001 7 7 5.3148 3.0483 0.0001 8 6 5.8410 2.4920 1.2537 9 6 5.8411 4.3988 -0.2386 10 6 7.3502 4.3227 -0.4794 11 1 7.8264 3.8123 0.3578 12 8 7.6043 3.5993 -1.6852 13 6 7.9188 5.7377 -0.6041 14 8 9.3421 5.6713 -0.7123 15 6 10.0064 6.8484 -0.8306 16 6 9.2955 8.0464 -0.8477 17 6 9.9563 9.2346 -0.9613 18 6 11.3601 9.2472 -1.0725 19 6 12.0515 10.4723 -1.1965 20 1 11.6075 11.3832 -0.8227 21 6 13.3113 10.5062 -1.8036 22 7 13.7008 9.5106 -2.5587 23 14 14.4377 11.9722 -1.5366 24 1 13.7678 12.9558 -0.6482 25 1 15.7021 11.5165 -0.9051 26 1 14.7387 12.6096 -2.8435 27 6 12.0708 8.0314 -1.0598 28 6 11.3952 6.8521 -0.9406 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.3880 2.1184 0.0004 35 1 3.4820 3.5626 0.8894 36 1 3.4828 3.5616 -0.8905 37 1 5.5498 3.1329 2.0860 38 1 5.4354 1.4919 1.4060 39 1 6.9284 2.4388 1.1993 40 1 5.6432 5.0250 0.6313 41 1 5.3548 4.8289 -1.1142 42 1 7.2093 3.9971 -2.4732 43 1 7.6481 6.3171 0.2786 44 1 7.5087 6.2170 -1.4931 45 1 8.2186 8.0346 -0.7664 46 1 9.4039 10.1627 -0.9703 47 1 14.5746 9.5339 -2.9793 48 1 13.1474 8.0325 -1.1450 49 1 11.9385 5.9187 -0.9310 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052188440.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:51 Heat of formation + Delta-G solvation = -96.395676 kcal Electronic energy + Delta-G solvation = -27904.412553 eV Core-core repulsion = 23831.893221 eV Total energy + Delta-G solvation = -4072.519332 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.22215 -39.09069 -38.01021 -36.50633 -35.79623 -35.33359 -33.30261 -31.50020 -30.70874 -29.64618 -28.99758 -28.22531 -26.84000 -24.78043 -23.90280 -22.76422 -21.44903 -20.80809 -20.62091 -20.52291 -17.63613 -17.34971 -16.91060 -16.63269 -16.46761 -16.17751 -16.10604 -15.40260 -15.20126 -15.11650 -14.63505 -14.25703 -14.06879 -13.91811 -13.81275 -13.36880 -13.15489 -12.93617 -12.79704 -12.34998 -12.33837 -12.23776 -12.12964 -12.01436 -11.86341 -11.73916 -11.65610 -11.33528 -11.14754 -10.92538 -10.76551 -10.57795 -10.13653 -9.96576 -9.83573 -9.77446 -9.46473 -9.32246 -9.01178 -8.54924 -7.63280 -7.01999 -6.71335 -4.24567 2.34479 2.64067 2.77874 2.96037 3.09497 3.14475 3.21263 3.49770 3.95946 4.09534 4.33791 4.50508 4.56619 4.58625 4.62990 4.74495 4.82783 4.84424 4.91010 5.00533 5.16261 5.24616 5.31932 5.35361 5.38900 5.41559 5.46436 5.53421 5.61994 5.68266 5.89757 6.03420 6.06483 6.10853 6.24126 6.60806 6.70451 6.75859 6.98658 7.11913 7.12302 7.19598 7.47735 7.56842 7.79858 7.83354 7.93124 8.01769 8.21592 8.46768 8.66688 8.90929 8.99870 10.23085 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.046766 B = 0.001544 C = 0.001522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.582236 B =18134.738493 C =18391.806553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.738 5.738 4 C 0.512 3.488 5 O -0.515 6.515 6 C 0.035 3.965 7 N -0.513 5.513 8 C 0.015 3.985 9 C 0.027 3.973 10 C 0.116 3.884 11 H 0.106 0.894 12 O -0.537 6.537 13 C 0.039 3.961 14 O -0.316 6.316 15 C -0.009 4.009 16 C -0.168 4.168 17 C -0.199 4.199 18 C 0.087 3.913 19 C -0.464 4.464 20 H 0.076 0.924 21 C 0.075 3.925 22 N -0.798 5.798 23 Si 0.906 3.094 24 H -0.261 1.261 25 H -0.272 1.272 26 H -0.275 1.275 27 C -0.133 4.133 28 C -0.119 4.119 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.399 0.601 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.021 0.979 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.047 0.953 41 H 0.082 0.918 42 H 0.369 0.631 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.279 0.721 48 H 0.126 0.874 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.877 -12.179 5.090 27.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.392 5.392 4 C 0.297 3.703 5 O -0.389 6.389 6 C -0.096 4.096 7 N -0.236 5.236 8 C -0.133 4.133 9 C -0.102 4.102 10 C 0.056 3.944 11 H 0.124 0.876 12 O -0.341 6.341 13 C -0.039 4.039 14 O -0.232 6.232 15 C -0.052 4.052 16 C -0.187 4.187 17 C -0.219 4.219 18 C 0.085 3.915 19 C -0.494 4.494 20 H 0.094 0.906 21 C -0.142 4.142 22 N -0.424 5.424 23 Si 0.731 3.269 24 H -0.185 1.185 25 H -0.197 1.197 26 H -0.201 1.201 27 C -0.152 4.152 28 C -0.138 4.138 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.233 0.767 35 H 0.080 0.920 36 H 0.122 0.878 37 H 0.039 0.961 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.066 0.934 41 H 0.100 0.900 42 H 0.216 0.784 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.110 0.890 46 H 0.112 0.888 47 H 0.090 0.910 48 H 0.143 0.857 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -22.524 -13.825 4.967 26.891 hybrid contribution -0.667 2.244 0.299 2.360 sum -23.191 -11.581 5.266 26.451 Atomic orbital electron populations 1.22005 0.94433 1.03307 1.02504 1.21274 0.94154 0.82970 1.02475 1.46066 1.07162 1.08945 1.77059 1.20586 0.81970 0.91626 0.76069 1.90714 1.54855 1.46094 1.47241 1.21982 0.90379 0.94084 1.03140 1.61517 1.04352 1.21318 1.36459 1.22642 1.01868 1.00836 0.87932 1.22797 0.96558 0.89160 1.01637 1.21861 0.91849 0.91030 0.89664 0.87626 1.86669 1.78168 1.52995 1.16253 1.23116 0.82923 0.96993 1.00860 1.85895 1.17158 1.29685 1.90441 1.18635 0.91617 0.83187 1.11754 1.20386 0.97215 0.93000 1.08126 1.20548 0.94408 0.95381 1.11522 1.17603 0.90663 0.93435 0.89798 1.19485 1.00885 0.94778 1.34229 0.90552 1.25876 0.98266 0.97319 0.92724 1.69847 1.19777 1.31314 1.21498 0.86298 0.80039 0.81587 0.78993 1.18500 1.19742 1.20083 1.20982 0.99921 0.90842 1.03480 1.19849 0.90500 0.98052 1.05351 0.92005 0.91925 0.90758 0.91440 0.91592 0.76708 0.91961 0.87815 0.96094 0.89553 0.90567 0.93448 0.89964 0.78420 0.92630 0.92890 0.88990 0.88804 0.90963 0.85667 0.88404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.49 10.03 37.16 0.37 -0.12 16 2 C 0.11 0.67 6.39 -4.04 -0.03 0.64 16 3 N -0.74 -4.41 5.56 -60.29 -0.33 -4.75 16 4 C 0.51 4.79 7.52 -10.98 -0.08 4.71 16 5 O -0.51 -7.16 14.33 5.56 0.08 -7.08 16 6 C 0.04 0.27 5.45 -4.98 -0.03 0.24 16 7 N -0.51 -5.46 4.45 -244.37 -1.09 -6.54 16 8 C 0.01 0.16 8.97 60.06 0.54 0.70 16 9 C 0.03 0.26 4.60 -3.82 -0.02 0.24 16 10 C 0.12 1.53 3.20 -26.72 -0.09 1.44 16 11 H 0.11 1.50 6.34 -51.93 -0.33 1.17 16 12 O -0.54 -7.98 13.25 -40.08 -0.53 -8.51 16 13 C 0.04 0.59 4.36 37.16 0.16 0.75 16 14 O -0.32 -6.59 10.09 -23.58 -0.24 -6.83 16 15 C -0.01 -0.20 6.71 -38.78 -0.26 -0.46 16 16 C -0.17 -3.80 8.96 -39.83 -0.36 -4.16 16 17 C -0.20 -4.89 9.74 -39.25 -0.38 -5.27 16 18 C 0.09 2.35 5.57 -106.80 -0.60 1.75 16 19 C -0.46 -12.36 9.04 -37.83 -0.34 -12.70 16 20 H 0.08 1.96 7.91 -52.48 -0.41 1.54 16 21 C 0.07 1.89 5.13 -17.34 -0.09 1.80 16 22 N -0.80 -20.83 10.96 55.54 0.61 -20.23 16 23 Si 0.91 18.75 29.60 -169.99 -5.03 13.72 16 24 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 25 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 26 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 27 C -0.13 -3.51 8.64 -39.25 -0.34 -3.85 16 28 C -0.12 -2.93 9.92 -39.83 -0.40 -3.33 16 29 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.40 1.18 8.47 -40.82 -0.35 0.83 16 35 H 0.06 0.36 8.12 -51.93 -0.42 -0.07 16 36 H 0.10 0.58 7.93 -51.93 -0.41 0.17 16 37 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.09 1.05 5.82 -51.93 -0.30 0.75 16 39 H 0.08 0.90 6.37 -51.93 -0.33 0.57 16 40 H 0.05 0.41 8.12 -51.93 -0.42 -0.01 16 41 H 0.08 0.67 7.93 -51.93 -0.41 0.25 16 42 H 0.37 4.20 9.05 45.56 0.41 4.61 16 43 H 0.06 0.80 7.66 -51.93 -0.40 0.40 16 44 H 0.05 0.77 7.64 -51.93 -0.40 0.37 16 45 H 0.09 1.77 6.27 -52.49 -0.33 1.44 16 46 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 47 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 48 H 0.13 3.38 6.16 -52.49 -0.32 3.06 16 49 H 0.10 2.26 8.06 -52.48 -0.42 1.84 16 LS Contribution 400.85 15.07 6.04 6.04 Total: -1.00 -33.70 400.85 -9.36 -43.06 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -6.94 Total: 8.73 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -1.93 Total: -17.62 kcal Atomic # 7 Polarization: -30.70 SS G_CDS: -0.81 Total: -31.52 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.69 Total: -22.42 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.70 -9.36 -43.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052188440.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.335 kcal (2) G-P(sol) polarization free energy of solvation -33.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds