Wall clock time and date at job start Sat Apr 11 2020 04:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47033 * 2 1 4 4 C 1.34783 * 119.99760 * 179.97438 * 3 2 1 5 5 O 1.21282 * 120.00190 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99873 * 179.97438 * 4 3 2 7 7 N 1.46900 * 109.47399 * 180.02562 * 6 4 3 8 8 C 1.46900 * 110.99619 * 293.95645 * 7 6 4 9 9 C 1.46893 * 110.99987 * 170.00000 * 7 6 4 10 10 C 1.53006 * 109.46666 * 189.99941 * 9 7 6 11 11 H 1.09001 * 109.47051 * 304.99405 * 10 9 7 12 12 O 1.42893 * 109.47364 * 65.00147 * 10 9 7 13 13 C 1.53009 * 109.46831 * 184.99889 * 10 9 7 14 14 O 1.42897 * 109.46921 * 174.99581 * 13 10 9 15 15 C 1.35675 * 117.00125 * 180.02562 * 14 13 10 16 16 C 1.39313 * 119.81487 * 359.72422 * 15 14 13 17 17 C 1.36440 * 120.18365 * 179.75720 * 16 15 14 18 18 C 1.40831 * 119.81045 * 0.52339 * 17 16 15 19 19 C 1.41217 * 120.17778 * 179.71623 * 18 17 16 20 20 H 1.08004 * 120.00061 * 24.56411 * 19 18 17 21 21 C 1.39890 * 120.00032 * 204.56166 * 19 18 17 22 22 N 1.30886 * 119.99515 * 17.94615 * 21 19 18 23 23 Si 1.86792 * 120.00234 * 197.94283 * 21 19 18 24 24 H 1.48504 * 109.46983 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47133 * 119.99688 * 23 21 19 26 26 H 1.48495 * 109.47273 * 240.00309 * 23 21 19 27 27 C 1.40834 * 119.64137 * 359.73552 * 18 17 16 28 28 C 1.36430 * 119.81194 * 0.02562 * 27 18 17 29 29 H 1.08995 * 109.47639 * 300.00318 * 1 2 3 30 30 H 1.09003 * 109.46993 * 60.00258 * 1 2 3 31 31 H 1.09000 * 109.46856 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47639 * 239.99682 * 2 1 3 33 33 H 1.09003 * 109.46993 * 119.99742 * 2 1 3 34 34 H 0.96995 * 120.00034 * 0.02562 * 3 2 1 35 35 H 1.08995 * 109.47106 * 60.00034 * 6 4 3 36 36 H 1.09003 * 109.46970 * 300.00435 * 6 4 3 37 37 H 1.09006 * 109.46768 * 296.04353 * 8 7 6 38 38 H 1.08997 * 109.47515 * 56.04039 * 8 7 6 39 39 H 1.09003 * 109.47131 * 176.04774 * 8 7 6 40 40 H 1.09002 * 109.47379 * 70.00184 * 9 7 6 41 41 H 1.08998 * 109.47532 * 309.99336 * 9 7 6 42 42 H 0.96701 * 113.99898 * 59.99440 * 12 10 9 43 43 H 1.09003 * 109.46699 * 55.00020 * 13 10 9 44 44 H 1.08999 * 109.47088 * 295.00279 * 13 10 9 45 45 H 1.08000 * 119.90714 * 0.02972 * 16 15 14 46 46 H 1.08007 * 120.09092 * 180.25554 * 17 16 15 47 47 H 0.96999 * 119.99379 * 180.02562 * 22 21 19 48 48 H 1.08000 * 120.09009 * 179.97438 * 27 18 17 49 49 H 1.08004 * 119.90814 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1316 0.7056 0.0005 6 6 3.8458 3.0483 -0.0001 7 7 5.3148 3.0483 0.0001 8 6 5.8410 2.4920 1.2537 9 6 5.8411 4.3988 -0.2386 10 6 7.3502 4.3227 -0.4794 11 1 7.8264 3.8123 0.3578 12 8 7.6043 3.5993 -1.6852 13 6 7.9188 5.7377 -0.6041 14 8 9.3421 5.6713 -0.7123 15 6 10.0064 6.8484 -0.8306 16 6 9.2955 8.0464 -0.8477 17 6 9.9563 9.2346 -0.9613 18 6 11.3601 9.2472 -1.0725 19 6 12.0515 10.4723 -1.1965 20 1 11.6075 11.3832 -0.8227 21 6 13.3113 10.5062 -1.8036 22 7 13.7008 9.5106 -2.5587 23 14 14.4377 11.9722 -1.5366 24 1 13.7678 12.9558 -0.6482 25 1 15.7021 11.5165 -0.9051 26 1 14.7387 12.6096 -2.8435 27 6 12.0708 8.0314 -1.0598 28 6 11.3952 6.8521 -0.9406 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.3880 2.1184 0.0004 35 1 3.4820 3.5626 0.8894 36 1 3.4828 3.5616 -0.8905 37 1 5.5498 3.1329 2.0860 38 1 5.4354 1.4919 1.4060 39 1 6.9284 2.4388 1.1993 40 1 5.6432 5.0250 0.6313 41 1 5.3548 4.8289 -1.1142 42 1 7.2093 3.9971 -2.4732 43 1 7.6481 6.3171 0.2786 44 1 7.5087 6.2170 -1.4931 45 1 8.2186 8.0346 -0.7664 46 1 9.4039 10.1627 -0.9703 47 1 14.5746 9.5339 -2.9793 48 1 13.1474 8.0325 -1.1450 49 1 11.9385 5.9187 -0.9310 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052188440.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:50 Heat of formation + Delta-G solvation = -122.269454 kcal Electronic energy + Delta-G solvation = -27905.534524 eV Core-core repulsion = 23831.893221 eV Total energy + Delta-G solvation = -4073.641303 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.96381 -40.58920 -39.19016 -37.97344 -36.80952 -36.08915 -35.16945 -32.27517 -31.81500 -31.24960 -30.79958 -28.90318 -27.90641 -26.53853 -24.81019 -23.50936 -22.75791 -22.34708 -21.97807 -21.41189 -19.24844 -18.77159 -18.10823 -17.53139 -17.40310 -17.11058 -17.00979 -16.86420 -16.13050 -16.02722 -15.77510 -15.66961 -15.35642 -15.05496 -14.79864 -14.75197 -14.19750 -14.07509 -13.95902 -13.85280 -13.47761 -13.30109 -13.10942 -12.85942 -12.79665 -12.73908 -12.67644 -12.60350 -12.54396 -12.37741 -12.26196 -11.82348 -11.68950 -11.56156 -11.25177 -11.01293 -10.87167 -10.70213 -10.06857 -9.55224 -9.25456 -8.91493 -8.58815 -6.21905 0.95426 1.03687 1.40417 1.51528 1.55732 1.67216 2.03772 2.23421 2.49691 2.73562 3.08687 3.56798 3.71368 3.81777 3.86605 4.01398 4.03909 4.16993 4.20908 4.27690 4.30574 4.33051 4.37010 4.40913 4.47167 4.51978 4.53046 4.59836 4.69333 4.87624 4.94997 4.99452 5.06082 5.07741 5.14102 5.22829 5.26678 5.29365 5.51947 5.60076 5.65220 5.89235 5.92419 5.98179 6.06914 6.27244 6.57899 6.62541 6.82109 6.92695 6.96030 7.11924 7.33430 8.37904 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.046766 B = 0.001544 C = 0.001522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.582236 B =18134.738493 C =18391.806553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.112 3.888 3 N -0.721 5.721 4 C 0.506 3.494 5 O -0.571 6.571 6 C 0.038 3.962 7 N -0.537 5.537 8 C 0.021 3.979 9 C 0.038 3.962 10 C 0.120 3.880 11 H 0.088 0.912 12 O -0.563 6.563 13 C 0.031 3.969 14 O -0.334 6.334 15 C 0.000 4.000 16 C -0.163 4.163 17 C -0.206 4.206 18 C 0.053 3.947 19 C -0.499 4.499 20 H 0.077 0.923 21 C 0.033 3.967 22 N -0.833 5.833 23 Si 0.982 3.018 24 H -0.257 1.257 25 H -0.267 1.267 26 H -0.267 1.267 27 C -0.152 4.152 28 C -0.136 4.136 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.417 0.583 35 H 0.090 0.910 36 H 0.130 0.870 37 H 0.038 0.962 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.107 0.893 42 H 0.383 0.617 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.133 0.867 46 H 0.108 0.892 47 H 0.287 0.713 48 H 0.108 0.892 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.690 -10.818 5.359 29.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.012 4.012 3 N -0.376 5.376 4 C 0.293 3.707 5 O -0.449 6.449 6 C -0.092 4.092 7 N -0.261 5.261 8 C -0.127 4.127 9 C -0.090 4.090 10 C 0.061 3.939 11 H 0.106 0.894 12 O -0.369 6.369 13 C -0.045 4.045 14 O -0.249 6.249 15 C -0.044 4.044 16 C -0.182 4.182 17 C -0.226 4.226 18 C 0.051 3.949 19 C -0.528 4.528 20 H 0.095 0.905 21 C -0.181 4.181 22 N -0.460 5.460 23 Si 0.803 3.197 24 H -0.180 1.180 25 H -0.191 1.191 26 H -0.192 1.192 27 C -0.172 4.172 28 C -0.155 4.155 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.254 0.746 35 H 0.108 0.892 36 H 0.148 0.852 37 H 0.057 0.943 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.125 0.875 42 H 0.232 0.768 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.151 0.849 46 H 0.126 0.874 47 H 0.097 0.903 48 H 0.126 0.874 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -25.417 -12.453 5.233 28.784 hybrid contribution 0.034 1.651 0.213 1.665 sum -25.384 -10.802 5.446 28.119 Atomic orbital electron populations 1.21944 0.91838 1.04054 1.03397 1.21306 0.96173 0.82684 1.01045 1.45974 1.06584 1.09713 1.75333 1.21055 0.82483 0.92008 0.75194 1.90699 1.56390 1.47760 1.50079 1.22078 0.88432 0.93100 1.05608 1.61390 1.06438 1.21957 1.36328 1.22492 1.00651 1.00465 0.89102 1.22676 0.93708 0.89115 1.03493 1.21848 0.94260 0.89224 0.88609 0.89388 1.86635 1.78913 1.53905 1.17464 1.23503 0.79794 0.98954 1.02282 1.85889 1.20433 1.28521 1.90102 1.18705 0.91377 0.84479 1.09811 1.20709 0.99218 0.91747 1.06497 1.20818 0.93778 0.96912 1.11077 1.17968 0.92103 0.93757 0.91049 1.19741 1.02462 0.94865 1.35771 0.90471 1.26743 0.99233 1.00325 0.91759 1.69907 1.20534 1.33334 1.22189 0.85168 0.77679 0.77767 0.79131 1.18014 1.19142 1.19165 1.20880 0.99322 0.91707 1.05293 1.20004 0.91878 0.97755 1.05866 0.90981 0.91039 0.90163 0.93111 0.92965 0.74614 0.89229 0.85183 0.94334 0.91344 0.92389 0.91582 0.87528 0.76834 0.90937 0.91269 0.84945 0.87395 0.90270 0.87414 0.87892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 10.03 71.98 0.72 0.10 16 2 C 0.11 1.22 6.39 86.38 0.55 1.77 16 3 N -0.72 -7.37 5.56 -463.06 -2.57 -9.94 16 4 C 0.51 8.84 7.52 87.66 0.66 9.50 16 5 O -0.57 -16.18 14.33 -3.03 -0.04 -16.22 16 6 C 0.04 0.46 5.45 85.56 0.47 0.93 16 7 N -0.54 -10.31 4.45 -927.05 -4.12 -14.43 16 8 C 0.02 0.44 8.97 127.69 1.15 1.59 16 9 C 0.04 0.61 4.60 86.31 0.40 1.00 16 10 C 0.12 2.94 3.20 30.60 0.10 3.04 16 11 H 0.09 2.46 6.34 -2.39 -0.02 2.44 16 12 O -0.56 -16.09 13.25 -144.34 -1.91 -18.00 16 13 C 0.03 0.86 4.36 71.99 0.31 1.17 16 14 O -0.33 -13.46 10.09 -85.29 -0.86 -14.32 16 15 C 0.00 0.01 6.71 22.79 0.15 0.16 16 16 C -0.16 -7.03 8.96 22.11 0.20 -6.83 16 17 C -0.21 -10.00 9.74 22.48 0.22 -9.78 16 18 C 0.05 2.92 5.57 -21.28 -0.12 2.81 16 19 C -0.50 -27.09 9.04 23.40 0.21 -26.88 16 20 H 0.08 4.01 7.91 -2.91 -0.02 3.99 16 21 C 0.03 1.69 5.13 85.23 0.44 2.13 16 22 N -0.83 -44.58 10.96 21.82 0.24 -44.34 16 23 Si 0.98 38.64 29.60 68.60 2.03 40.67 16 24 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 25 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 26 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 27 C -0.15 -8.34 8.64 22.48 0.19 -8.14 16 28 C -0.14 -6.87 9.92 22.11 0.22 -6.65 16 29 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.42 1.22 8.47 -92.71 -0.79 0.43 16 35 H 0.09 0.64 8.12 -2.39 -0.02 0.62 16 36 H 0.13 0.89 7.93 -2.39 -0.02 0.87 16 37 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16 38 H 0.07 1.71 5.82 -2.39 -0.01 1.70 16 39 H 0.06 1.40 6.37 -2.39 -0.02 1.39 16 40 H 0.07 0.85 8.12 -2.39 -0.02 0.83 16 41 H 0.11 1.22 7.93 -2.39 -0.02 1.20 16 42 H 0.38 8.04 9.05 -74.06 -0.67 7.37 16 43 H 0.07 1.80 7.66 -2.39 -0.02 1.78 16 44 H 0.07 1.73 7.64 -2.39 -0.02 1.71 16 45 H 0.13 4.55 6.27 -2.91 -0.02 4.53 16 46 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 47 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 48 H 0.11 6.14 6.16 -2.91 -0.02 6.12 16 49 H 0.10 4.91 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -76.35 400.85 -1.86 -78.21 By element: Atomic # 1 Polarization: 32.94 SS G_CDS: -0.48 Total: 32.46 kcal Atomic # 6 Polarization: -39.95 SS G_CDS: 5.87 Total: -34.09 kcal Atomic # 7 Polarization: -62.25 SS G_CDS: -6.46 Total: -68.71 kcal Atomic # 8 Polarization: -45.73 SS G_CDS: -2.82 Total: -48.54 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.67 kcal Total: -76.35 -1.86 -78.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052188440.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.059 kcal (2) G-P(sol) polarization free energy of solvation -76.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds