Wall clock time and date at job start Sat Apr 11 2020 04:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46900 * 109.47115 * 2 1 4 4 C 1.46900 * 111.00068 * 298.42183 * 3 2 1 5 5 C 1.50696 * 109.46953 * 288.01819 * 4 3 2 6 6 O 1.21289 * 120.00659 * 357.91445 * 5 4 3 7 7 N 1.34780 * 120.00264 * 177.91020 * 5 4 3 8 8 C 1.46492 * 120.00426 * 179.97438 * 7 5 4 9 9 C 1.46897 * 111.00128 * 62.37659 * 3 2 1 10 10 C 1.52999 * 109.47052 * 76.96667 * 9 3 2 11 11 H 1.09009 * 109.46985 * 54.05456 * 10 9 3 12 12 O 1.42901 * 109.47575 * 294.05756 * 10 9 3 13 13 C 1.53007 * 109.47073 * 174.05113 * 10 9 3 14 14 O 1.42896 * 109.47004 * 185.00307 * 13 10 9 15 15 C 1.35677 * 117.00040 * 180.02562 * 14 13 10 16 16 C 1.39312 * 119.81879 * 179.97438 * 15 14 13 17 17 C 1.36440 * 120.18128 * 179.72242 * 16 15 14 18 18 C 1.40820 * 119.81544 * 0.28395 * 17 16 15 19 19 C 1.41218 * 120.18405 * 180.02562 * 18 17 16 20 20 H 1.07996 * 120.00391 * 209.17317 * 19 18 17 21 21 C 1.39894 * 119.99614 * 29.17027 * 19 18 17 22 22 N 1.30876 * 120.00005 * 11.86876 * 21 19 18 23 23 Si 1.86801 * 119.99944 * 191.86806 * 21 19 18 24 24 H 1.48506 * 109.46926 * 59.99877 * 23 21 19 25 25 H 1.48497 * 109.47065 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47095 * 300.00327 * 23 21 19 27 27 C 1.40832 * 119.64217 * 359.97438 * 18 17 16 28 28 C 1.36443 * 119.81186 * 0.02562 * 27 18 17 29 29 H 1.09004 * 109.47488 * 180.11624 * 1 2 3 30 30 H 1.09006 * 109.47265 * 300.11826 * 1 2 3 31 31 H 1.09003 * 109.47237 * 60.11775 * 1 2 3 32 32 H 1.08995 * 109.46809 * 239.99845 * 2 1 3 33 33 H 1.08998 * 109.46827 * 120.00606 * 2 1 3 34 34 H 1.08996 * 109.46871 * 48.01302 * 4 3 2 35 35 H 1.08993 * 109.47242 * 168.01796 * 4 3 2 36 36 H 0.97003 * 119.99677 * 0.02562 * 7 5 4 37 37 H 1.08999 * 109.47651 * 300.00293 * 8 7 5 38 38 H 1.09001 * 109.47224 * 60.00350 * 8 7 5 39 39 H 1.09001 * 109.47115 * 180.02562 * 8 7 5 40 40 H 1.08998 * 109.47158 * 316.97712 * 9 3 2 41 41 H 1.08996 * 109.47049 * 196.97027 * 9 3 2 42 42 H 0.96704 * 113.99634 * 299.99751 * 12 10 9 43 43 H 1.08997 * 109.46812 * 65.00520 * 13 10 9 44 44 H 1.08993 * 109.47140 * 305.00107 * 13 10 9 45 45 H 1.07998 * 119.90998 * 0.02562 * 16 15 14 46 46 H 1.08009 * 120.08825 * 180.30006 * 17 16 15 47 47 H 0.97005 * 119.99929 * 179.97438 * 22 21 19 48 48 H 1.08003 * 120.09691 * 180.02562 * 27 18 17 49 49 H 1.07998 * 119.90811 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5797 2.0989 -1.2061 5 6 2.3422 1.5851 -2.4001 6 8 3.1972 0.7372 -2.2548 7 7 2.0740 2.0677 -3.6296 8 6 2.8156 1.5687 -4.7903 9 6 1.5956 2.0933 1.2151 10 6 2.4702 1.6558 2.3918 11 1 3.5205 1.7956 2.1356 12 8 2.2292 0.2766 2.6777 13 6 2.1288 2.4990 3.6221 14 8 3.0236 2.1717 4.6871 15 6 2.8552 2.8347 5.8588 16 6 3.6947 2.5611 6.9363 17 6 3.5357 3.2275 8.1163 18 6 2.5157 4.1898 8.2449 19 6 2.3444 4.8845 9.4624 20 1 1.3653 5.2386 9.7490 21 6 3.4433 5.1140 10.2972 22 7 4.6564 4.8981 9.8563 23 14 3.1789 5.7286 12.0413 24 1 2.3562 4.7468 12.7928 25 1 4.4931 5.8913 12.7133 26 1 2.4771 7.0368 12.0041 27 6 1.6679 4.4564 7.1524 28 6 1.8403 3.7813 5.9794 29 1 -0.3634 -1.0277 0.0021 30 1 -0.3634 0.5157 0.8890 31 1 -0.3634 0.5120 -0.8911 32 1 1.8932 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8899 34 1 0.5131 1.9334 -1.3575 35 1 1.7685 3.1656 -1.0861 36 1 1.3904 2.7461 -3.7459 37 1 3.8787 1.7678 -4.6554 38 1 2.6568 0.4948 -4.8886 39 1 2.4633 2.0723 -5.6905 40 1 0.5536 1.8559 1.4291 41 1 1.7001 3.1677 1.0644 42 1 1.3127 0.0783 2.9141 43 1 1.1044 2.2919 3.9316 44 1 2.2276 3.5564 3.3767 45 1 4.4767 1.8230 6.8359 46 1 4.1905 3.0176 8.9492 47 1 5.4184 5.0576 10.4351 48 1 0.8834 5.1933 7.2429 49 1 1.1913 3.9848 5.1405 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056509675.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:54 Heat of formation + Delta-G solvation = -90.443767 kcal Electronic energy + Delta-G solvation = -28490.995953 eV Core-core repulsion = 24418.734715 eV Total energy + Delta-G solvation = -4072.261238 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.26530 -39.14890 -38.26643 -36.60915 -35.72879 -34.83298 -33.26360 -31.45817 -30.57719 -29.74738 -29.03489 -28.26858 -26.25926 -25.15112 -24.51179 -22.65143 -21.25907 -20.66015 -20.58393 -20.28224 -17.54078 -17.33442 -17.04053 -16.86930 -16.55384 -16.23723 -15.90998 -15.35422 -15.19250 -15.07287 -14.43587 -14.23591 -14.00030 -13.88542 -13.74369 -13.30035 -13.27188 -12.91750 -12.77977 -12.65408 -12.31905 -12.20722 -12.14067 -11.87387 -11.77227 -11.73992 -11.41270 -11.14970 -11.02995 -10.90460 -10.75529 -10.64868 -10.21154 -9.91883 -9.80472 -9.68922 -9.47352 -9.29652 -9.05555 -8.47270 -7.63521 -6.95587 -6.65493 -4.25753 2.38877 2.71513 2.80997 2.95373 3.10071 3.12668 3.22519 3.53662 3.98391 4.08836 4.39739 4.45970 4.67513 4.70398 4.74249 4.82494 4.90396 4.97895 5.05026 5.10173 5.13751 5.13964 5.25760 5.33566 5.35028 5.40822 5.61958 5.67183 5.70839 5.80479 6.00951 6.05572 6.09200 6.22571 6.25233 6.67673 6.74382 6.81732 6.98381 7.12591 7.14052 7.21330 7.47115 7.57635 7.67517 7.78860 7.96999 8.02697 8.22492 8.46784 8.67266 8.93047 9.00129 10.29896 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.030486 B = 0.001740 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.242562 B =16084.697842 C =16240.357594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.033 3.967 3 N -0.508 5.508 4 C 0.027 3.973 5 C 0.511 3.489 6 O -0.514 6.514 7 N -0.743 5.743 8 C 0.089 3.911 9 C 0.022 3.978 10 C 0.118 3.882 11 H 0.115 0.885 12 O -0.543 6.543 13 C 0.040 3.960 14 O -0.316 6.316 15 C -0.002 4.002 16 C -0.123 4.123 17 C -0.125 4.125 18 C 0.086 3.914 19 C -0.466 4.466 20 H 0.075 0.925 21 C 0.073 3.927 22 N -0.808 5.808 23 Si 0.910 3.090 24 H -0.265 1.265 25 H -0.279 1.279 26 H -0.267 1.267 27 C -0.193 4.193 28 C -0.173 4.173 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.400 0.600 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.051 0.949 41 H 0.084 0.916 42 H 0.366 0.634 43 H 0.051 0.949 44 H 0.058 0.942 45 H 0.098 0.902 46 H 0.126 0.874 47 H 0.279 0.721 48 H 0.094 0.906 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.915 -4.090 -23.832 25.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.094 4.094 3 N -0.231 5.231 4 C -0.104 4.104 5 C 0.296 3.704 6 O -0.387 6.387 7 N -0.397 5.397 8 C -0.055 4.055 9 C -0.106 4.106 10 C 0.059 3.941 11 H 0.133 0.867 12 O -0.347 6.347 13 C -0.038 4.038 14 O -0.231 6.231 15 C -0.045 4.045 16 C -0.141 4.141 17 C -0.144 4.144 18 C 0.084 3.916 19 C -0.497 4.497 20 H 0.093 0.907 21 C -0.143 4.143 22 N -0.434 5.434 23 Si 0.735 3.265 24 H -0.190 1.190 25 H -0.204 1.204 26 H -0.192 1.192 27 C -0.213 4.213 28 C -0.192 4.192 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.127 0.873 34 H 0.086 0.914 35 H 0.120 0.880 36 H 0.233 0.767 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.069 0.931 41 H 0.103 0.897 42 H 0.213 0.787 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.117 0.883 46 H 0.144 0.856 47 H 0.090 0.910 48 H 0.112 0.888 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.709 -4.903 -23.824 25.231 hybrid contribution -2.137 1.214 0.651 2.542 sum -8.845 -3.688 -23.172 25.076 Atomic orbital electron populations 1.22481 0.99027 1.02550 1.01316 1.22617 0.91776 0.89363 1.05686 1.61729 1.59489 1.02445 0.99462 1.22087 0.98046 0.99927 0.90327 1.20651 0.83696 0.82120 0.83903 1.90729 1.31944 1.30922 1.85120 1.45824 1.41940 1.44604 1.07307 1.21497 0.97060 0.99894 0.87051 1.22824 0.97887 0.99132 0.90792 1.21908 1.01419 0.81014 0.89788 0.86739 1.86657 1.32921 1.24743 1.90398 1.23099 0.93695 0.98960 0.88030 1.85905 1.54905 1.62611 1.19700 1.18658 1.00408 0.99453 0.85976 1.19875 0.99550 1.02327 0.92388 1.21002 1.01018 0.96135 0.96242 1.17600 0.91150 0.90619 0.92201 1.19398 0.95201 1.32475 1.02635 0.90735 1.25846 0.94639 0.93891 0.99905 1.69791 0.98970 1.38058 1.36629 0.86348 0.78330 0.79908 0.81932 1.18989 1.20425 1.19208 1.20609 1.04348 1.03174 0.93167 1.20397 0.99661 1.00611 0.98501 0.91754 0.92373 0.93191 0.90136 0.87275 0.91387 0.87963 0.76706 0.92208 0.92355 0.90793 0.93120 0.89741 0.78699 0.93127 0.92410 0.88342 0.85635 0.90965 0.88763 0.88951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.48 9.32 37.16 0.35 -1.13 16 2 C 0.03 0.33 5.55 -3.82 -0.02 0.31 16 3 N -0.51 -5.21 4.25 -236.09 -1.00 -6.22 16 4 C 0.03 0.21 5.31 -4.98 -0.03 0.18 16 5 C 0.51 4.90 7.52 -10.99 -0.08 4.81 16 6 O -0.51 -7.31 14.92 5.55 0.08 -7.23 16 7 N -0.74 -4.51 5.71 -67.08 -0.38 -4.90 16 8 C 0.09 0.49 10.70 59.84 0.64 1.13 16 9 C 0.02 0.20 4.68 -3.83 -0.02 0.19 16 10 C 0.12 1.50 3.47 -26.73 -0.09 1.41 16 11 H 0.11 1.69 8.14 -51.92 -0.42 1.26 16 12 O -0.54 -7.16 10.46 -40.08 -0.42 -7.58 16 13 C 0.04 0.59 4.37 37.16 0.16 0.75 16 14 O -0.32 -6.49 10.09 -23.58 -0.24 -6.73 16 15 C 0.00 -0.04 6.71 -38.78 -0.26 -0.30 16 16 C -0.12 -3.01 9.92 -39.83 -0.40 -3.41 16 17 C -0.12 -3.29 8.60 -39.25 -0.34 -3.62 16 18 C 0.09 2.32 5.54 -106.81 -0.59 1.73 16 19 C -0.47 -12.46 9.04 -37.83 -0.34 -12.80 16 20 H 0.07 1.90 7.87 -52.49 -0.41 1.49 16 21 C 0.07 1.85 5.23 -17.34 -0.09 1.76 16 22 N -0.81 -21.23 10.92 55.54 0.61 -20.62 16 23 Si 0.91 18.93 29.58 -169.99 -5.03 13.90 16 24 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 25 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 26 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 27 C -0.19 -4.73 9.74 -39.25 -0.38 -5.12 16 28 C -0.17 -3.87 8.96 -39.83 -0.36 -4.23 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.42 6.14 -51.93 -0.32 0.10 16 31 H 0.05 0.34 6.21 -51.93 -0.32 0.02 16 32 H 0.08 0.96 6.47 -51.93 -0.34 0.63 16 33 H 0.11 1.25 5.39 -51.93 -0.28 0.97 16 34 H 0.07 0.39 5.82 -51.93 -0.30 0.09 16 35 H 0.10 0.61 7.67 -51.93 -0.40 0.21 16 36 H 0.40 1.12 8.83 -40.82 -0.36 0.76 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 40 H 0.05 0.41 5.71 -51.93 -0.30 0.11 16 41 H 0.08 0.69 7.62 -51.93 -0.40 0.29 16 42 H 0.37 3.58 9.04 45.56 0.41 4.00 16 43 H 0.05 0.70 7.63 -51.93 -0.40 0.31 16 44 H 0.06 0.83 7.66 -51.93 -0.40 0.43 16 45 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 46 H 0.13 3.40 6.29 -52.48 -0.33 3.07 16 47 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 48 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 49 H 0.09 1.76 6.27 -52.49 -0.33 1.43 16 LS Contribution 391.67 15.07 5.90 5.90 Total: -1.00 -33.45 391.67 -8.89 -42.34 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -6.56 Total: 9.45 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -1.85 Total: -18.32 kcal Atomic # 7 Polarization: -30.96 SS G_CDS: -0.78 Total: -31.74 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.57 Total: -21.54 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.45 -8.89 -42.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056509675.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.107 kcal (2) G-P(sol) polarization free energy of solvation -33.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds