Wall clock time and date at job start Sat Apr 11 2020 04:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46900 * 109.47115 * 2 1 4 4 C 1.46900 * 111.00068 * 298.42183 * 3 2 1 5 5 C 1.50696 * 109.46953 * 288.01819 * 4 3 2 6 6 O 1.21289 * 120.00659 * 357.91445 * 5 4 3 7 7 N 1.34780 * 120.00264 * 177.91020 * 5 4 3 8 8 C 1.46492 * 120.00426 * 179.97438 * 7 5 4 9 9 C 1.46897 * 111.00128 * 62.37659 * 3 2 1 10 10 C 1.52999 * 109.47052 * 76.96667 * 9 3 2 11 11 H 1.09009 * 109.46985 * 54.05456 * 10 9 3 12 12 O 1.42901 * 109.47575 * 294.05756 * 10 9 3 13 13 C 1.53007 * 109.47073 * 174.05113 * 10 9 3 14 14 O 1.42896 * 109.47004 * 185.00307 * 13 10 9 15 15 C 1.35677 * 117.00040 * 180.02562 * 14 13 10 16 16 C 1.39312 * 119.81879 * 179.97438 * 15 14 13 17 17 C 1.36440 * 120.18128 * 179.72242 * 16 15 14 18 18 C 1.40820 * 119.81544 * 0.28395 * 17 16 15 19 19 C 1.41218 * 120.18405 * 180.02562 * 18 17 16 20 20 H 1.07996 * 120.00391 * 209.17317 * 19 18 17 21 21 C 1.39894 * 119.99614 * 29.17027 * 19 18 17 22 22 N 1.30876 * 120.00005 * 11.86876 * 21 19 18 23 23 Si 1.86801 * 119.99944 * 191.86806 * 21 19 18 24 24 H 1.48506 * 109.46926 * 59.99877 * 23 21 19 25 25 H 1.48497 * 109.47065 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47095 * 300.00327 * 23 21 19 27 27 C 1.40832 * 119.64217 * 359.97438 * 18 17 16 28 28 C 1.36443 * 119.81186 * 0.02562 * 27 18 17 29 29 H 1.09004 * 109.47488 * 180.11624 * 1 2 3 30 30 H 1.09006 * 109.47265 * 300.11826 * 1 2 3 31 31 H 1.09003 * 109.47237 * 60.11775 * 1 2 3 32 32 H 1.08995 * 109.46809 * 239.99845 * 2 1 3 33 33 H 1.08998 * 109.46827 * 120.00606 * 2 1 3 34 34 H 1.08996 * 109.46871 * 48.01302 * 4 3 2 35 35 H 1.08993 * 109.47242 * 168.01796 * 4 3 2 36 36 H 0.97003 * 119.99677 * 0.02562 * 7 5 4 37 37 H 1.08999 * 109.47651 * 300.00293 * 8 7 5 38 38 H 1.09001 * 109.47224 * 60.00350 * 8 7 5 39 39 H 1.09001 * 109.47115 * 180.02562 * 8 7 5 40 40 H 1.08998 * 109.47158 * 316.97712 * 9 3 2 41 41 H 1.08996 * 109.47049 * 196.97027 * 9 3 2 42 42 H 0.96704 * 113.99634 * 299.99751 * 12 10 9 43 43 H 1.08997 * 109.46812 * 65.00520 * 13 10 9 44 44 H 1.08993 * 109.47140 * 305.00107 * 13 10 9 45 45 H 1.07998 * 119.90998 * 0.02562 * 16 15 14 46 46 H 1.08009 * 120.08825 * 180.30006 * 17 16 15 47 47 H 0.97005 * 119.99929 * 179.97438 * 22 21 19 48 48 H 1.08003 * 120.09691 * 180.02562 * 27 18 17 49 49 H 1.07998 * 119.90811 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5797 2.0989 -1.2061 5 6 2.3422 1.5851 -2.4001 6 8 3.1972 0.7372 -2.2548 7 7 2.0740 2.0677 -3.6296 8 6 2.8156 1.5687 -4.7903 9 6 1.5956 2.0933 1.2151 10 6 2.4702 1.6558 2.3918 11 1 3.5205 1.7956 2.1356 12 8 2.2292 0.2766 2.6777 13 6 2.1288 2.4990 3.6221 14 8 3.0236 2.1717 4.6871 15 6 2.8552 2.8347 5.8588 16 6 3.6947 2.5611 6.9363 17 6 3.5357 3.2275 8.1163 18 6 2.5157 4.1898 8.2449 19 6 2.3444 4.8845 9.4624 20 1 1.3653 5.2386 9.7490 21 6 3.4433 5.1140 10.2972 22 7 4.6564 4.8981 9.8563 23 14 3.1789 5.7286 12.0413 24 1 2.3562 4.7468 12.7928 25 1 4.4931 5.8913 12.7133 26 1 2.4771 7.0368 12.0041 27 6 1.6679 4.4564 7.1524 28 6 1.8403 3.7813 5.9794 29 1 -0.3634 -1.0277 0.0021 30 1 -0.3634 0.5157 0.8890 31 1 -0.3634 0.5120 -0.8911 32 1 1.8932 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8899 34 1 0.5131 1.9334 -1.3575 35 1 1.7685 3.1656 -1.0861 36 1 1.3904 2.7461 -3.7459 37 1 3.8787 1.7678 -4.6554 38 1 2.6568 0.4948 -4.8886 39 1 2.4633 2.0723 -5.6905 40 1 0.5536 1.8559 1.4291 41 1 1.7001 3.1677 1.0644 42 1 1.3127 0.0783 2.9141 43 1 1.1044 2.2919 3.9316 44 1 2.2276 3.5564 3.3767 45 1 4.4767 1.8230 6.8359 46 1 4.1905 3.0176 8.9492 47 1 5.4184 5.0576 10.4351 48 1 0.8834 5.1933 7.2429 49 1 1.1913 3.9848 5.1405 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056509675.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:53 Heat of formation + Delta-G solvation = -116.109060 kcal Electronic energy + Delta-G solvation = -28492.108884 eV Core-core repulsion = 24418.734715 eV Total energy + Delta-G solvation = -4073.374168 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.03265 -40.57061 -39.38851 -38.09971 -36.85023 -35.50783 -35.12949 -32.45212 -31.62503 -31.20225 -30.83760 -29.14391 -27.19391 -26.42441 -25.65705 -23.79283 -22.63849 -22.27760 -21.81689 -21.03510 -19.22561 -18.67592 -18.10706 -17.71420 -17.55591 -17.08893 -17.00217 -16.83185 -16.13469 -16.00673 -15.74475 -15.62645 -15.14547 -15.08822 -14.74874 -14.59001 -14.05451 -14.01758 -13.92769 -13.88696 -13.60764 -13.49397 -13.07756 -13.05885 -12.90595 -12.77881 -12.64056 -12.51412 -12.50565 -12.34711 -11.95441 -11.75181 -11.62303 -11.54058 -11.19410 -11.01606 -10.90088 -10.57764 -10.08462 -9.54808 -9.14623 -8.84604 -8.53639 -6.23566 0.96785 1.04083 1.40750 1.52143 1.54466 1.70123 2.10557 2.24950 2.52780 2.77661 3.15030 3.49703 3.70387 3.89201 3.94889 4.00027 4.09402 4.18838 4.21270 4.30567 4.36925 4.39516 4.42912 4.48231 4.49932 4.50455 4.58171 4.62598 4.66243 4.88115 4.95262 5.04294 5.06407 5.09745 5.20737 5.22970 5.30945 5.44435 5.51046 5.60207 5.66449 5.88912 6.02675 6.08107 6.11103 6.28247 6.58812 6.64730 6.81692 6.86804 6.98124 7.11997 7.36583 8.43387 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.030486 B = 0.001740 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.242562 B =16084.697842 C =16240.357594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.039 3.961 3 N -0.535 5.535 4 C 0.030 3.970 5 C 0.504 3.496 6 O -0.572 6.572 7 N -0.727 5.727 8 C 0.086 3.914 9 C 0.033 3.967 10 C 0.126 3.874 11 H 0.087 0.913 12 O -0.561 6.561 13 C 0.032 3.968 14 O -0.333 6.333 15 C 0.009 3.991 16 C -0.141 4.141 17 C -0.144 4.144 18 C 0.051 3.949 19 C -0.501 4.501 20 H 0.077 0.923 21 C 0.029 3.971 22 N -0.842 5.842 23 Si 0.984 3.016 24 H -0.261 1.261 25 H -0.272 1.272 26 H -0.259 1.259 27 C -0.199 4.199 28 C -0.168 4.168 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.125 0.875 36 H 0.419 0.581 37 H 0.043 0.957 38 H 0.045 0.955 39 H 0.110 0.890 40 H 0.073 0.927 41 H 0.103 0.897 42 H 0.381 0.619 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.103 0.897 46 H 0.107 0.893 47 H 0.285 0.715 48 H 0.109 0.891 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.520 -2.665 -25.257 27.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.089 4.089 3 N -0.258 5.258 4 C -0.100 4.100 5 C 0.290 3.710 6 O -0.450 6.450 7 N -0.381 5.381 8 C -0.058 4.058 9 C -0.095 4.095 10 C 0.066 3.934 11 H 0.105 0.895 12 O -0.368 6.368 13 C -0.045 4.045 14 O -0.249 6.249 15 C -0.035 4.035 16 C -0.160 4.160 17 C -0.163 4.163 18 C 0.049 3.951 19 C -0.531 4.531 20 H 0.095 0.905 21 C -0.183 4.183 22 N -0.470 5.470 23 Si 0.805 3.195 24 H -0.185 1.185 25 H -0.196 1.196 26 H -0.184 1.184 27 C -0.219 4.219 28 C -0.186 4.186 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.143 0.857 36 H 0.255 0.745 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.129 0.871 40 H 0.091 0.909 41 H 0.121 0.879 42 H 0.230 0.770 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.122 0.878 46 H 0.125 0.875 47 H 0.095 0.905 48 H 0.127 0.873 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.365 -3.452 -25.305 27.203 hybrid contribution -1.329 0.688 0.842 1.717 sum -10.694 -2.764 -24.463 26.841 Atomic orbital electron populations 1.22385 0.96686 1.03069 1.02287 1.22413 0.93596 0.89368 1.03503 1.61557 1.60832 1.02680 1.00725 1.22170 0.98963 1.00567 0.88309 1.21146 0.83094 0.81410 0.85327 1.90711 1.34591 1.33617 1.86056 1.45742 1.41745 1.44171 1.06475 1.21589 0.96355 0.99699 0.88191 1.22701 0.97942 0.99874 0.88953 1.21807 1.00837 0.80612 0.90159 0.89523 1.86637 1.34462 1.25099 1.90615 1.23499 0.93696 1.00288 0.86970 1.85902 1.56719 1.62437 1.19817 1.18723 0.99471 0.98816 0.86491 1.20026 1.00463 1.02653 0.92821 1.20892 1.01561 0.97298 0.96578 1.17965 0.92269 0.91355 0.93501 1.19674 0.95845 1.33853 1.03775 0.90512 1.26729 0.93982 0.93678 1.03924 1.69873 0.99850 1.39029 1.38245 0.85224 0.78493 0.79453 0.76316 1.18534 1.19609 1.18370 1.20877 1.04137 1.03565 0.93286 1.20726 0.99579 0.99323 0.98986 0.91593 0.91318 0.92054 0.92664 0.89114 0.88758 0.85685 0.74465 0.93849 0.93622 0.87116 0.90888 0.87864 0.76987 0.91097 0.91067 0.87846 0.87505 0.90475 0.87309 0.84815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.33 9.32 71.98 0.67 -1.65 16 2 C 0.04 0.76 5.55 86.30 0.48 1.24 16 3 N -0.53 -10.01 4.25 -900.85 -3.83 -13.84 16 4 C 0.03 0.38 5.31 85.56 0.45 0.83 16 5 C 0.50 9.08 7.52 87.66 0.66 9.74 16 6 O -0.57 -16.69 14.92 -3.06 -0.05 -16.73 16 7 N -0.73 -7.42 5.71 -484.53 -2.77 -10.19 16 8 C 0.09 0.85 10.70 127.77 1.37 2.22 16 9 C 0.03 0.51 4.68 86.30 0.40 0.92 16 10 C 0.13 2.98 3.47 30.60 0.11 3.09 16 11 H 0.09 2.54 8.14 -2.38 -0.02 2.52 16 12 O -0.56 -14.24 10.46 -144.35 -1.51 -15.75 16 13 C 0.03 0.86 4.37 71.98 0.31 1.17 16 14 O -0.33 -13.26 10.09 -85.31 -0.86 -14.12 16 15 C 0.01 0.41 6.71 22.79 0.15 0.56 16 16 C -0.14 -7.07 9.92 22.11 0.22 -6.85 16 17 C -0.14 -7.86 8.60 22.48 0.19 -7.66 16 18 C 0.05 2.80 5.54 -21.28 -0.12 2.68 16 19 C -0.50 -27.28 9.04 23.40 0.21 -27.07 16 20 H 0.08 3.97 7.87 -2.91 -0.02 3.95 16 21 C 0.03 1.51 5.23 85.24 0.45 1.95 16 22 N -0.84 -45.55 10.92 21.82 0.24 -45.31 16 23 Si 0.98 39.03 29.58 68.60 2.03 41.06 16 24 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 25 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 26 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 27 C -0.20 -9.60 9.74 22.49 0.22 -9.38 16 28 C -0.17 -7.15 8.96 22.11 0.20 -6.95 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 0.72 6.14 -2.38 -0.01 0.71 16 31 H 0.06 0.63 6.21 -2.39 -0.01 0.61 16 32 H 0.05 1.36 6.47 -2.39 -0.02 1.34 16 33 H 0.09 2.08 5.39 -2.39 -0.01 2.07 16 34 H 0.09 0.70 5.82 -2.39 -0.01 0.68 16 35 H 0.13 0.99 7.67 -2.39 -0.02 0.97 16 36 H 0.42 1.02 8.83 -92.71 -0.82 0.20 16 37 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.07 0.83 5.71 -2.39 -0.01 0.82 16 41 H 0.10 1.24 7.62 -2.39 -0.02 1.22 16 42 H 0.38 6.76 9.04 -74.05 -0.67 6.09 16 43 H 0.07 1.67 7.63 -2.39 -0.02 1.66 16 44 H 0.07 1.78 7.66 -2.39 -0.02 1.76 16 45 H 0.10 4.92 8.06 -2.91 -0.02 4.89 16 46 H 0.11 6.11 6.29 -2.91 -0.02 6.09 16 47 H 0.28 14.07 8.30 -92.70 -0.77 13.30 16 48 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 49 H 0.13 4.51 6.27 -2.91 -0.02 4.50 16 Total: -1.00 -76.60 391.67 -1.26 -77.86 By element: Atomic # 1 Polarization: 32.70 SS G_CDS: -0.50 Total: 32.20 kcal Atomic # 6 Polarization: -41.15 SS G_CDS: 5.98 Total: -35.18 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: -6.36 Total: -69.33 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -2.42 Total: -46.61 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Total: -76.60 -1.26 -77.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056509675.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.250 kcal (2) G-P(sol) polarization free energy of solvation -76.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds