Wall clock time and date at job start Sat Apr 11 2020 04:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46891 * 109.47262 * 2 1 4 4 C 1.46907 * 111.00150 * 67.20580 * 3 2 1 5 5 C 1.50705 * 109.46725 * 71.76217 * 4 3 2 6 6 O 1.21280 * 120.00261 * 5.68340 * 5 4 3 7 7 N 1.34778 * 119.99770 * 185.67822 * 5 4 3 8 8 C 1.46498 * 119.99745 * 179.97438 * 7 5 4 9 9 C 1.46900 * 111.00484 * 303.25514 * 3 2 1 10 10 C 1.53002 * 109.46618 * 286.57495 * 9 3 2 11 11 H 1.09001 * 109.47393 * 306.32012 * 10 9 3 12 12 O 1.42899 * 109.47492 * 66.32231 * 10 9 3 13 13 C 1.53005 * 109.46924 * 186.32209 * 10 9 3 14 14 O 1.42898 * 109.47286 * 174.99649 * 13 10 9 15 15 C 1.35675 * 117.00446 * 180.02562 * 14 13 10 16 16 C 1.39315 * 119.81467 * 359.72389 * 15 14 13 17 17 C 1.36438 * 120.18698 * 179.76101 * 16 15 14 18 18 C 1.40832 * 119.80693 * 0.51765 * 17 16 15 19 19 C 1.41217 * 120.17739 * 179.72129 * 18 17 16 20 20 H 1.08004 * 120.00021 * 165.33004 * 19 18 17 21 21 C 1.39892 * 119.99873 * 345.32257 * 19 18 17 22 22 N 1.30875 * 119.99998 * 330.99166 * 21 19 18 23 23 Si 1.86799 * 119.99621 * 150.98885 * 21 19 18 24 24 H 1.48497 * 109.46948 * 95.00045 * 23 21 19 25 25 H 1.48508 * 109.46844 * 214.99580 * 23 21 19 26 26 H 1.48498 * 109.47388 * 334.99524 * 23 21 19 27 27 C 1.40834 * 119.64346 * 359.73665 * 18 17 16 28 28 C 1.36436 * 119.81101 * 0.02562 * 27 18 17 29 29 H 1.08998 * 109.47378 * 185.41080 * 1 2 3 30 30 H 1.09003 * 109.47077 * 305.40810 * 1 2 3 31 31 H 1.08998 * 109.47243 * 65.40572 * 1 2 3 32 32 H 1.09005 * 109.46737 * 239.99954 * 2 1 3 33 33 H 1.09003 * 109.47188 * 120.00536 * 2 1 3 34 34 H 1.08991 * 109.47047 * 191.76394 * 4 3 2 35 35 H 1.08996 * 109.47161 * 311.76918 * 4 3 2 36 36 H 0.96995 * 120.00193 * 0.02562 * 7 5 4 37 37 H 1.08998 * 109.46957 * 180.02562 * 8 7 5 38 38 H 1.08998 * 109.47677 * 300.00278 * 8 7 5 39 39 H 1.09007 * 109.47001 * 60.00693 * 8 7 5 40 40 H 1.08996 * 109.47484 * 166.57326 * 9 3 2 41 41 H 1.08996 * 109.47063 * 46.56821 * 9 3 2 42 42 H 0.96703 * 113.99902 * 60.00020 * 12 10 9 43 43 H 1.09001 * 109.46751 * 55.00000 * 13 10 9 44 44 H 1.09002 * 109.47032 * 294.99904 * 13 10 9 45 45 H 1.08006 * 119.90274 * 0.02644 * 16 15 14 46 46 H 1.07995 * 120.09388 * 180.25826 * 17 16 15 47 47 H 0.97000 * 119.99691 * 180.02562 * 22 21 19 48 48 H 1.08000 * 120.09298 * 179.97438 * 27 18 17 49 49 H 1.08001 * 119.90603 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6942 2.0584 1.2644 5 6 2.5593 1.5031 2.3664 6 8 3.4370 0.7077 2.1059 7 7 2.3576 1.8906 3.6414 8 6 3.1982 1.3503 4.7128 9 6 1.4862 2.1320 -1.1468 10 6 2.1868 1.6707 -2.4264 11 1 3.2664 1.7486 -2.2979 12 8 1.8362 0.3123 -2.6982 13 6 1.7473 2.5546 -3.5954 14 8 2.4875 2.2000 -4.7652 15 6 2.2173 2.8942 -5.8992 16 6 1.2498 3.8966 -5.8837 17 6 0.9755 4.6027 -7.0185 18 6 1.6657 4.3085 -8.2102 19 6 1.3838 5.0305 -9.3907 20 1 2.0605 4.9774 -10.2308 21 6 0.2280 5.8144 -9.4719 22 7 -0.8354 5.4855 -8.7835 23 14 0.2025 7.3304 -10.5629 24 1 -0.3708 6.9781 -11.8866 25 1 -0.6297 8.3836 -9.9275 26 1 1.5877 7.8349 -10.7418 27 6 2.6384 3.2900 -8.2185 28 6 2.9042 2.5966 -7.0740 29 1 -0.3634 -1.0231 0.0969 30 1 -0.3633 0.5954 0.8376 31 1 -0.3633 0.4277 -0.9344 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.8764 3.1282 1.1635 35 1 0.6449 1.8897 1.5063 36 1 1.6555 2.5265 3.8498 37 1 2.8884 1.7759 5.6672 38 1 3.0913 0.2662 4.7470 39 1 4.2403 1.6068 4.5214 40 1 1.6624 3.1976 -1.0000 41 1 0.4151 1.9493 -1.2330 42 1 0.8883 0.1684 -2.8242 43 1 1.9339 3.6002 -3.3505 44 1 0.6831 2.4091 -3.7809 45 1 0.7186 4.1181 -4.9699 46 1 0.2282 5.3823 -7.0038 47 1 -1.6369 6.0289 -8.8401 48 1 3.1718 3.0580 -9.1285 49 1 3.6495 1.8150 -7.0787 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056509676.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:58 Heat of formation + Delta-G solvation = -90.678179 kcal Electronic energy + Delta-G solvation = -28595.551997 eV Core-core repulsion = 24523.280595 eV Total energy + Delta-G solvation = -4072.271403 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.25348 -39.11524 -38.25021 -36.57055 -35.68143 -34.82538 -33.42431 -31.40368 -30.57713 -29.60713 -29.24434 -28.18848 -26.23370 -25.13674 -24.51799 -22.65055 -21.28368 -20.81472 -20.38092 -20.19745 -17.53718 -17.37960 -16.96982 -16.82135 -16.61488 -16.27234 -15.91174 -15.36887 -15.17871 -15.03636 -14.36630 -14.20643 -13.97309 -13.91910 -13.66400 -13.32794 -13.24883 -12.90079 -12.74135 -12.64454 -12.41732 -12.29658 -12.03797 -11.89166 -11.82186 -11.73290 -11.37891 -11.11855 -11.01290 -10.98355 -10.73996 -10.53721 -10.18577 -9.99511 -9.86546 -9.67317 -9.46834 -9.37943 -8.87473 -8.45628 -7.63270 -7.11940 -6.83887 -4.21417 2.39694 2.72664 2.75641 2.98631 3.05128 3.08832 3.24577 3.56840 3.90340 4.11366 4.41901 4.48088 4.52965 4.73250 4.77417 4.83254 4.92468 5.00325 5.08987 5.12076 5.14621 5.18218 5.28876 5.38422 5.40248 5.41623 5.66876 5.70448 5.71335 5.82519 6.01953 6.12321 6.12631 6.27469 6.32195 6.69593 6.76249 6.83115 6.92304 7.03044 7.14926 7.28189 7.43859 7.56117 7.69476 7.94355 7.97729 8.00063 8.16834 8.45234 8.65677 8.87495 9.01388 10.07820 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.023169 B = 0.001854 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.214886 B =15100.191139 C =15458.314594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.036 3.964 3 N -0.509 5.509 4 C 0.029 3.971 5 C 0.511 3.489 6 O -0.513 6.513 7 N -0.743 5.743 8 C 0.089 3.911 9 C 0.022 3.978 10 C 0.118 3.882 11 H 0.115 0.885 12 O -0.544 6.544 13 C 0.041 3.959 14 O -0.317 6.317 15 C -0.021 4.021 16 C -0.168 4.168 17 C -0.153 4.153 18 C 0.087 3.913 19 C -0.462 4.462 20 H 0.079 0.921 21 C 0.082 3.918 22 N -0.781 5.781 23 Si 0.900 3.100 24 H -0.270 1.270 25 H -0.275 1.275 26 H -0.259 1.259 27 C -0.205 4.205 28 C -0.105 4.105 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.111 0.889 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.066 0.934 36 H 0.400 0.600 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.085 0.915 41 H 0.051 0.949 42 H 0.367 0.633 43 H 0.057 0.943 44 H 0.050 0.950 45 H 0.091 0.909 46 H 0.121 0.879 47 H 0.281 0.719 48 H 0.099 0.901 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.830 -3.616 23.576 23.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.091 4.091 3 N -0.232 5.232 4 C -0.103 4.103 5 C 0.296 3.704 6 O -0.387 6.387 7 N -0.397 5.397 8 C -0.055 4.055 9 C -0.107 4.107 10 C 0.059 3.941 11 H 0.132 0.868 12 O -0.348 6.348 13 C -0.037 4.037 14 O -0.233 6.233 15 C -0.064 4.064 16 C -0.187 4.187 17 C -0.173 4.173 18 C 0.085 3.915 19 C -0.491 4.491 20 H 0.097 0.903 21 C -0.138 4.138 22 N -0.406 5.406 23 Si 0.724 3.276 24 H -0.195 1.195 25 H -0.200 1.200 26 H -0.182 1.182 27 C -0.225 4.225 28 C -0.124 4.124 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.129 0.871 33 H 0.093 0.907 34 H 0.121 0.879 35 H 0.084 0.916 36 H 0.233 0.767 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.103 0.897 41 H 0.069 0.931 42 H 0.213 0.787 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.109 0.891 46 H 0.139 0.861 47 H 0.091 0.909 48 H 0.117 0.883 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.111 -4.407 23.448 23.858 hybrid contribution -2.319 1.507 -0.125 2.768 sum -2.430 -2.899 23.323 23.628 Atomic orbital electron populations 1.22467 0.98901 1.02408 1.01418 1.22572 0.91898 0.89317 1.05361 1.61764 1.59188 1.02506 0.99713 1.22062 0.97721 1.00122 0.90372 1.20653 0.84824 0.81741 0.83179 1.90732 1.32348 1.32974 1.82614 1.45830 1.38192 1.48431 1.07246 1.21498 0.95427 0.99468 0.89107 1.22828 0.97817 0.98723 0.91289 1.21894 1.01481 0.81329 0.89414 0.86765 1.86641 1.28928 1.26108 1.93173 1.23072 0.95770 0.98548 0.86283 1.85865 1.61561 1.59591 1.16280 1.18546 1.02635 0.99102 0.86091 1.20559 1.00059 0.99516 0.98549 1.20944 1.03236 1.01627 0.91466 1.17572 0.90818 0.90144 0.93003 1.19478 1.05506 1.23793 1.00317 0.90275 1.25929 0.94339 0.98168 0.95333 1.69921 1.01248 1.34542 1.34874 0.86444 0.79672 0.81313 0.80220 1.19533 1.20009 1.18234 1.20493 1.05191 1.00495 0.96275 1.19604 1.00605 1.01108 0.91073 0.91810 0.93273 0.92287 0.87109 0.90674 0.87885 0.91619 0.76702 0.90796 0.92355 0.92216 0.89707 0.93122 0.78655 0.92488 0.93135 0.89066 0.86118 0.90852 0.88319 0.88534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.55 9.20 37.16 0.34 -1.21 16 2 C 0.04 0.38 5.34 -3.83 -0.02 0.35 16 3 N -0.51 -5.36 4.25 -236.07 -1.00 -6.37 16 4 C 0.03 0.23 5.35 -4.97 -0.03 0.20 16 5 C 0.51 4.97 7.38 -10.98 -0.08 4.89 16 6 O -0.51 -7.39 15.15 5.56 0.08 -7.31 16 7 N -0.74 -4.61 5.71 -67.08 -0.38 -5.00 16 8 C 0.09 0.50 10.70 59.85 0.64 1.14 16 9 C 0.02 0.21 4.60 -3.82 -0.02 0.19 16 10 C 0.12 1.54 3.45 -26.73 -0.09 1.45 16 11 H 0.11 1.70 8.14 -51.93 -0.42 1.27 16 12 O -0.54 -7.34 10.36 -40.08 -0.42 -7.75 16 13 C 0.04 0.63 4.36 37.16 0.16 0.80 16 14 O -0.32 -6.62 10.09 -23.58 -0.24 -6.85 16 15 C -0.02 -0.49 6.71 -38.78 -0.26 -0.75 16 16 C -0.17 -3.95 8.96 -39.83 -0.36 -4.31 16 17 C -0.15 -3.99 8.76 -39.25 -0.34 -4.33 16 18 C 0.09 2.34 5.65 -106.80 -0.60 1.74 16 19 C -0.46 -12.26 9.00 -37.83 -0.34 -12.60 16 20 H 0.08 2.02 7.99 -52.48 -0.42 1.60 16 21 C 0.08 2.03 4.97 -17.34 -0.09 1.94 16 22 N -0.78 -19.84 11.05 55.54 0.61 -19.22 16 23 Si 0.90 18.31 29.64 -169.99 -5.04 13.27 16 24 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 25 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 26 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 27 C -0.20 -5.14 9.74 -39.25 -0.38 -5.52 16 28 C -0.11 -2.52 9.92 -39.83 -0.40 -2.91 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.35 6.18 -51.93 -0.32 0.03 16 31 H 0.06 0.46 5.94 -51.93 -0.31 0.15 16 32 H 0.11 1.34 5.57 -51.93 -0.29 1.05 16 33 H 0.07 0.90 6.53 -51.93 -0.34 0.56 16 34 H 0.10 0.64 7.71 -51.93 -0.40 0.24 16 35 H 0.07 0.40 6.01 -51.93 -0.31 0.08 16 36 H 0.40 1.19 8.83 -40.82 -0.36 0.83 16 37 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.74 7.70 -51.93 -0.40 0.34 16 41 H 0.05 0.44 5.69 -51.93 -0.30 0.14 16 42 H 0.37 3.82 8.60 45.56 0.39 4.21 16 43 H 0.06 0.85 7.66 -51.93 -0.40 0.45 16 44 H 0.05 0.76 7.64 -51.93 -0.40 0.36 16 45 H 0.09 1.88 6.27 -52.48 -0.33 1.55 16 46 H 0.12 3.20 5.88 -52.49 -0.31 2.89 16 47 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 48 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 49 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16 LS Contribution 391.00 15.07 5.89 5.89 Total: -1.00 -33.07 391.00 -8.93 -42.00 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -6.58 Total: 10.26 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -1.86 Total: -18.92 kcal Atomic # 7 Polarization: -29.81 SS G_CDS: -0.77 Total: -30.59 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.57 Total: -21.91 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.04 Total: 13.27 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.07 -8.93 -42.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056509676.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.681 kcal (2) G-P(sol) polarization free energy of solvation -33.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds