Wall clock time and date at job start Sat Apr 11 2020 04:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46891 * 109.47262 * 2 1 4 4 C 1.46907 * 111.00150 * 67.20580 * 3 2 1 5 5 C 1.50705 * 109.46725 * 71.76217 * 4 3 2 6 6 O 1.21280 * 120.00261 * 5.68340 * 5 4 3 7 7 N 1.34778 * 119.99770 * 185.67822 * 5 4 3 8 8 C 1.46498 * 119.99745 * 179.97438 * 7 5 4 9 9 C 1.46900 * 111.00484 * 303.25514 * 3 2 1 10 10 C 1.53002 * 109.46618 * 286.57495 * 9 3 2 11 11 H 1.09001 * 109.47393 * 306.32012 * 10 9 3 12 12 O 1.42899 * 109.47492 * 66.32231 * 10 9 3 13 13 C 1.53005 * 109.46924 * 186.32209 * 10 9 3 14 14 O 1.42898 * 109.47286 * 174.99649 * 13 10 9 15 15 C 1.35675 * 117.00446 * 180.02562 * 14 13 10 16 16 C 1.39315 * 119.81467 * 359.72389 * 15 14 13 17 17 C 1.36438 * 120.18698 * 179.76101 * 16 15 14 18 18 C 1.40832 * 119.80693 * 0.51765 * 17 16 15 19 19 C 1.41217 * 120.17739 * 179.72129 * 18 17 16 20 20 H 1.08004 * 120.00021 * 165.33004 * 19 18 17 21 21 C 1.39892 * 119.99873 * 345.32257 * 19 18 17 22 22 N 1.30875 * 119.99998 * 330.99166 * 21 19 18 23 23 Si 1.86799 * 119.99621 * 150.98885 * 21 19 18 24 24 H 1.48497 * 109.46948 * 95.00045 * 23 21 19 25 25 H 1.48508 * 109.46844 * 214.99580 * 23 21 19 26 26 H 1.48498 * 109.47388 * 334.99524 * 23 21 19 27 27 C 1.40834 * 119.64346 * 359.73665 * 18 17 16 28 28 C 1.36436 * 119.81101 * 0.02562 * 27 18 17 29 29 H 1.08998 * 109.47378 * 185.41080 * 1 2 3 30 30 H 1.09003 * 109.47077 * 305.40810 * 1 2 3 31 31 H 1.08998 * 109.47243 * 65.40572 * 1 2 3 32 32 H 1.09005 * 109.46737 * 239.99954 * 2 1 3 33 33 H 1.09003 * 109.47188 * 120.00536 * 2 1 3 34 34 H 1.08991 * 109.47047 * 191.76394 * 4 3 2 35 35 H 1.08996 * 109.47161 * 311.76918 * 4 3 2 36 36 H 0.96995 * 120.00193 * 0.02562 * 7 5 4 37 37 H 1.08998 * 109.46957 * 180.02562 * 8 7 5 38 38 H 1.08998 * 109.47677 * 300.00278 * 8 7 5 39 39 H 1.09007 * 109.47001 * 60.00693 * 8 7 5 40 40 H 1.08996 * 109.47484 * 166.57326 * 9 3 2 41 41 H 1.08996 * 109.47063 * 46.56821 * 9 3 2 42 42 H 0.96703 * 113.99902 * 60.00020 * 12 10 9 43 43 H 1.09001 * 109.46751 * 55.00000 * 13 10 9 44 44 H 1.09002 * 109.47032 * 294.99904 * 13 10 9 45 45 H 1.08006 * 119.90274 * 0.02644 * 16 15 14 46 46 H 1.07995 * 120.09388 * 180.25826 * 17 16 15 47 47 H 0.97000 * 119.99691 * 180.02562 * 22 21 19 48 48 H 1.08000 * 120.09298 * 179.97438 * 27 18 17 49 49 H 1.08001 * 119.90603 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6942 2.0584 1.2644 5 6 2.5593 1.5031 2.3664 6 8 3.4370 0.7077 2.1059 7 7 2.3576 1.8906 3.6414 8 6 3.1982 1.3503 4.7128 9 6 1.4862 2.1320 -1.1468 10 6 2.1868 1.6707 -2.4264 11 1 3.2664 1.7486 -2.2979 12 8 1.8362 0.3123 -2.6982 13 6 1.7473 2.5546 -3.5954 14 8 2.4875 2.2000 -4.7652 15 6 2.2173 2.8942 -5.8992 16 6 1.2498 3.8966 -5.8837 17 6 0.9755 4.6027 -7.0185 18 6 1.6657 4.3085 -8.2102 19 6 1.3838 5.0305 -9.3907 20 1 2.0605 4.9774 -10.2308 21 6 0.2280 5.8144 -9.4719 22 7 -0.8354 5.4855 -8.7835 23 14 0.2025 7.3304 -10.5629 24 1 -0.3708 6.9781 -11.8866 25 1 -0.6297 8.3836 -9.9275 26 1 1.5877 7.8349 -10.7418 27 6 2.6384 3.2900 -8.2185 28 6 2.9042 2.5966 -7.0740 29 1 -0.3634 -1.0231 0.0969 30 1 -0.3633 0.5954 0.8376 31 1 -0.3633 0.4277 -0.9344 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.8764 3.1282 1.1635 35 1 0.6449 1.8897 1.5063 36 1 1.6555 2.5265 3.8498 37 1 2.8884 1.7759 5.6672 38 1 3.0913 0.2662 4.7470 39 1 4.2403 1.6068 4.5214 40 1 1.6624 3.1976 -1.0000 41 1 0.4151 1.9493 -1.2330 42 1 0.8883 0.1684 -2.8242 43 1 1.9339 3.6002 -3.3505 44 1 0.6831 2.4091 -3.7809 45 1 0.7186 4.1181 -4.9699 46 1 0.2282 5.3823 -7.0038 47 1 -1.6369 6.0289 -8.8401 48 1 3.1718 3.0580 -9.1285 49 1 3.6495 1.8150 -7.0787 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056509676.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:57 Heat of formation + Delta-G solvation = -115.715526 kcal Electronic energy + Delta-G solvation = -28596.637698 eV Core-core repulsion = 24523.280595 eV Total energy + Delta-G solvation = -4073.357103 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.04248 -40.53690 -39.42160 -38.09137 -36.81985 -35.51254 -35.27110 -32.39928 -31.51248 -31.36926 -30.91345 -29.09496 -27.21735 -26.41038 -25.65950 -23.82377 -22.87172 -22.07976 -21.76974 -21.01367 -19.29500 -18.61461 -18.13854 -17.71911 -17.71039 -17.14491 -16.94306 -16.78898 -16.16806 -15.97861 -15.78836 -15.61379 -15.13336 -15.07465 -14.75281 -14.52561 -14.20675 -14.06650 -13.91718 -13.83688 -13.70034 -13.41517 -13.12181 -13.07698 -12.92581 -12.75971 -12.72026 -12.55973 -12.47284 -12.26079 -11.97921 -11.76050 -11.70476 -11.56695 -11.22851 -11.02751 -10.74024 -10.60211 -10.08931 -9.55052 -9.16644 -9.01187 -8.69002 -6.17056 0.95747 1.06119 1.39396 1.48682 1.58811 1.69205 2.10058 2.21219 2.54321 2.65173 3.13961 3.47678 3.72398 3.87987 3.94041 3.99289 4.07833 4.18164 4.20804 4.32243 4.34577 4.41984 4.43110 4.46670 4.49526 4.50779 4.60570 4.62048 4.64570 4.90572 4.95119 5.00609 5.02562 5.08342 5.14792 5.20361 5.38104 5.44687 5.49754 5.55002 5.66262 6.00611 6.01380 6.06131 6.08523 6.25647 6.55798 6.63954 6.78861 6.83801 6.93187 7.14346 7.35650 8.25858 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.023169 B = 0.001854 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.214886 B =15100.191139 C =15458.314594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.042 3.958 3 N -0.533 5.533 4 C 0.031 3.969 5 C 0.504 3.496 6 O -0.571 6.571 7 N -0.727 5.727 8 C 0.086 3.914 9 C 0.032 3.968 10 C 0.127 3.873 11 H 0.091 0.909 12 O -0.560 6.560 13 C 0.034 3.966 14 O -0.332 6.332 15 C -0.014 4.014 16 C -0.167 4.167 17 C -0.174 4.174 18 C 0.055 3.945 19 C -0.500 4.500 20 H 0.076 0.924 21 C 0.044 3.956 22 N -0.809 5.809 23 Si 0.976 3.024 24 H -0.261 1.261 25 H -0.263 1.263 26 H -0.261 1.261 27 C -0.218 4.218 28 C -0.118 4.118 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.054 0.946 34 H 0.125 0.875 35 H 0.092 0.908 36 H 0.419 0.581 37 H 0.110 0.890 38 H 0.045 0.955 39 H 0.044 0.956 40 H 0.102 0.898 41 H 0.070 0.930 42 H 0.380 0.620 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.121 0.879 46 H 0.111 0.889 47 H 0.291 0.709 48 H 0.106 0.894 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.517 -2.133 25.153 25.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.085 4.085 3 N -0.257 5.257 4 C -0.099 4.099 5 C 0.291 3.709 6 O -0.449 6.449 7 N -0.381 5.381 8 C -0.058 4.058 9 C -0.095 4.095 10 C 0.068 3.932 11 H 0.109 0.891 12 O -0.367 6.367 13 C -0.043 4.043 14 O -0.247 6.247 15 C -0.058 4.058 16 C -0.185 4.185 17 C -0.194 4.194 18 C 0.053 3.947 19 C -0.529 4.529 20 H 0.094 0.906 21 C -0.174 4.174 22 N -0.434 5.434 23 Si 0.796 3.204 24 H -0.186 1.186 25 H -0.187 1.187 26 H -0.185 1.185 27 C -0.237 4.237 28 C -0.136 4.136 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.143 0.857 35 H 0.110 0.890 36 H 0.255 0.745 37 H 0.129 0.871 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.120 0.880 41 H 0.088 0.912 42 H 0.229 0.771 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.139 0.861 46 H 0.129 0.871 47 H 0.102 0.898 48 H 0.124 0.876 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.840 -2.911 25.077 25.312 hybrid contribution -1.769 0.933 -0.447 2.049 sum -3.608 -1.979 24.629 24.971 Atomic orbital electron populations 1.22380 0.96718 1.02985 1.02265 1.22363 0.93581 0.89318 1.03243 1.61605 1.60321 1.02677 1.01051 1.22145 0.98572 1.00770 0.88456 1.21106 0.84276 0.81017 0.84512 1.90712 1.34882 1.35682 1.83609 1.45745 1.38179 1.47868 1.06338 1.21596 0.94760 0.99032 0.90449 1.22702 0.98253 0.99311 0.89282 1.21781 1.00590 0.80838 0.90029 0.89128 1.86625 1.30320 1.26385 1.93338 1.23434 0.95983 0.99871 0.84966 1.85863 1.62614 1.59410 1.16857 1.18658 1.01662 0.98535 0.86919 1.20789 0.99956 0.98837 0.98948 1.20960 1.03786 1.02411 0.92231 1.17946 0.91892 0.91084 0.93816 1.19715 1.06687 1.25909 1.00557 0.90628 1.26754 0.93320 1.00468 0.96822 1.69930 1.01890 1.35686 1.35906 0.85302 0.79552 0.77123 0.78429 1.18580 1.18701 1.18470 1.20666 1.05309 1.00561 0.97198 1.19867 1.01138 1.01412 0.91222 0.91582 0.91907 0.91645 0.89293 0.92716 0.85690 0.89001 0.74485 0.87115 0.93639 0.93741 0.87994 0.91165 0.77132 0.91353 0.91942 0.86121 0.87090 0.89784 0.87634 0.86946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.54 9.20 71.98 0.66 -1.88 16 2 C 0.04 0.86 5.34 86.31 0.46 1.32 16 3 N -0.53 -10.41 4.25 -900.80 -3.83 -14.24 16 4 C 0.03 0.41 5.35 85.56 0.46 0.87 16 5 C 0.50 9.27 7.38 87.66 0.65 9.91 16 6 O -0.57 -16.80 15.15 -3.03 -0.05 -16.84 16 7 N -0.73 -7.62 5.71 -484.52 -2.77 -10.39 16 8 C 0.09 0.86 10.70 127.77 1.37 2.23 16 9 C 0.03 0.55 4.60 86.30 0.40 0.95 16 10 C 0.13 3.16 3.45 30.60 0.11 3.26 16 11 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 12 O -0.56 -14.68 10.36 -144.35 -1.50 -16.17 16 13 C 0.03 0.99 4.36 71.98 0.31 1.30 16 14 O -0.33 -13.49 10.09 -85.29 -0.86 -14.35 16 15 C -0.01 -0.65 6.71 22.79 0.15 -0.50 16 16 C -0.17 -7.72 8.96 22.11 0.20 -7.52 16 17 C -0.17 -9.17 8.76 22.48 0.20 -8.97 16 18 C 0.05 3.02 5.65 -21.28 -0.12 2.90 16 19 C -0.50 -27.15 9.00 23.40 0.21 -26.94 16 20 H 0.08 3.98 7.99 -2.91 -0.02 3.96 16 21 C 0.04 2.16 4.97 85.24 0.42 2.59 16 22 N -0.81 -41.22 11.05 21.82 0.24 -40.98 16 23 Si 0.98 37.33 29.64 68.60 2.03 39.37 16 24 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 25 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 26 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 27 C -0.22 -11.16 9.74 22.48 0.22 -10.94 16 28 C -0.12 -5.65 9.92 22.11 0.22 -5.44 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.69 6.18 -2.39 -0.01 0.68 16 31 H 0.06 0.82 5.94 -2.39 -0.01 0.81 16 32 H 0.09 2.18 5.57 -2.38 -0.01 2.17 16 33 H 0.05 1.33 6.53 -2.39 -0.02 1.31 16 34 H 0.13 1.10 7.71 -2.39 -0.02 1.09 16 35 H 0.09 0.75 6.01 -2.39 -0.01 0.73 16 36 H 0.42 1.18 8.83 -92.71 -0.82 0.37 16 37 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 38 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.04 0.60 8.14 -2.38 -0.02 0.58 16 40 H 0.10 1.40 7.70 -2.39 -0.02 1.39 16 41 H 0.07 0.94 5.69 -2.39 -0.01 0.93 16 42 H 0.38 7.37 8.60 -74.06 -0.64 6.73 16 43 H 0.07 1.86 7.66 -2.39 -0.02 1.85 16 44 H 0.06 1.70 7.64 -2.39 -0.02 1.68 16 45 H 0.12 4.73 6.27 -2.91 -0.02 4.71 16 46 H 0.11 5.96 5.88 -2.91 -0.02 5.95 16 47 H 0.29 13.18 8.30 -92.71 -0.77 12.41 16 48 H 0.11 5.06 8.06 -2.91 -0.02 5.04 16 49 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -74.44 391.00 -1.28 -75.72 By element: Atomic # 1 Polarization: 35.20 SS G_CDS: -0.47 Total: 34.74 kcal Atomic # 6 Polarization: -42.76 SS G_CDS: 5.91 Total: -36.85 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: -6.36 Total: -65.61 kcal Atomic # 8 Polarization: -44.96 SS G_CDS: -2.40 Total: -47.36 kcal Atomic # 14 Polarization: 37.33 SS G_CDS: 2.03 Total: 39.37 kcal Total: -74.44 -1.28 -75.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056509676.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.997 kcal (2) G-P(sol) polarization free energy of solvation -74.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds