Wall clock time and date at job start Sat Apr 11 2020 04:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35999 * 116.99903 * 2 1 4 4 C 1.38567 * 120.07104 * 0.02907 * 3 2 1 5 5 C 1.38241 * 119.99712 * 179.70511 * 4 3 2 6 6 C 1.38253 * 120.14954 * 0.54240 * 5 4 3 7 7 C 1.50700 * 119.93267 * 179.72850 * 6 5 4 8 8 C 1.53001 * 109.46782 * 269.72986 * 7 6 5 9 9 N 1.46502 * 109.46882 * 179.97438 * 8 7 6 10 10 C 1.34773 * 119.99861 * 179.97438 * 9 8 7 11 11 O 1.21287 * 120.00246 * 0.02562 * 10 9 8 12 12 C 1.50698 * 119.99971 * 179.97438 * 10 9 8 13 13 H 1.09003 * 109.47350 * 60.00121 * 12 10 9 14 14 C 1.53003 * 109.47311 * 300.00191 * 12 10 9 15 15 N 1.46505 * 109.47573 * 180.02562 * 12 10 9 16 16 C 1.46498 * 119.99589 * 59.99863 * 15 12 10 17 17 C 1.36934 * 120.00233 * 240.00350 * 15 12 10 18 18 H 1.08000 * 120.00147 * 340.20688 * 17 15 12 19 19 C 1.38817 * 119.99602 * 160.20835 * 17 15 12 20 20 N 1.31615 * 120.00290 * 343.93867 * 19 17 15 21 21 Si 1.86803 * 119.99487 * 164.21459 * 19 17 15 22 22 H 1.48494 * 109.47008 * 265.13553 * 21 19 17 23 23 H 1.48506 * 109.47152 * 25.13787 * 21 19 17 24 24 H 1.48496 * 109.47040 * 145.13378 * 21 19 17 25 25 C 1.38243 * 120.14198 * 359.45261 * 6 5 4 26 26 C 1.38569 * 120.00285 * 0.27576 * 25 6 5 27 27 O 1.35991 * 120.07571 * 179.97438 * 26 25 6 28 28 C 1.42904 * 116.99925 * 359.97438 * 27 26 25 29 29 H 1.09008 * 109.47198 * 299.99534 * 1 2 3 30 30 H 1.08995 * 109.47460 * 59.99631 * 1 2 3 31 31 H 1.09004 * 109.47110 * 180.02562 * 1 2 3 32 32 H 1.07999 * 120.00228 * 359.97438 * 4 3 2 33 33 H 1.08002 * 119.92635 * 180.28971 * 5 4 3 34 34 H 1.08991 * 109.47393 * 149.72830 * 7 6 5 35 35 H 1.08999 * 109.46867 * 29.71977 * 7 6 5 36 36 H 1.08993 * 109.47293 * 59.99226 * 8 7 6 37 37 H 1.09004 * 109.46986 * 299.98926 * 8 7 6 38 38 H 0.96992 * 120.00034 * 359.97438 * 9 8 7 39 39 H 1.09003 * 109.46856 * 300.00232 * 14 12 10 40 40 H 1.08999 * 109.46745 * 59.99914 * 14 12 10 41 41 H 1.08998 * 109.47061 * 179.97438 * 14 12 10 42 42 H 1.09001 * 109.47643 * 265.36854 * 16 15 12 43 43 H 1.09005 * 109.47497 * 25.36236 * 16 15 12 44 44 H 1.08999 * 109.47184 * 145.36603 * 16 15 12 45 45 H 0.96994 * 119.99809 * 180.27621 * 20 19 17 46 46 H 1.07997 * 119.99974 * 180.25432 * 25 6 5 47 47 H 1.08997 * 109.46822 * 180.02562 * 28 27 26 48 48 H 1.08997 * 109.47482 * 300.00230 * 28 27 26 49 49 H 1.08999 * 109.46825 * 60.01111 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2931 2.3748 0.0006 5 6 1.9223 3.6057 0.0068 6 6 3.3028 3.6800 0.0010 7 6 3.9836 5.0245 0.0016 8 6 4.2138 5.4801 -1.4408 9 7 4.8750 6.7874 -1.4402 10 6 5.1796 7.3889 -2.6072 11 8 4.9059 6.8482 -3.6578 12 6 5.8593 8.7339 -2.6067 13 1 6.8172 8.6568 -2.0923 14 6 4.9739 9.7525 -1.8858 15 7 6.0799 9.1703 -3.9877 16 6 4.9398 9.3502 -4.8899 17 6 7.3516 9.4098 -4.4352 18 1 8.1474 9.5927 -3.7283 19 6 7.6180 9.4176 -5.7976 20 7 6.7529 8.8945 -6.6403 21 14 9.2080 10.1636 -6.4340 22 1 8.9690 11.5748 -6.8296 23 1 10.2391 10.1165 -5.3663 24 1 9.6798 9.3924 -7.6120 25 6 4.0602 2.5235 0.0005 26 6 3.4359 1.2864 0.0000 27 8 4.1795 0.1478 -0.0011 28 6 5.6004 0.3009 -0.0021 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 0.2146 2.3197 0.0007 33 1 1.3340 4.5115 0.0120 34 1 4.9417 4.9464 0.5153 35 1 3.3536 5.7504 0.5157 36 1 3.2557 5.5580 -1.9545 37 1 4.8437 4.7542 -1.9549 38 1 5.0935 7.2200 -0.6001 39 1 4.0160 9.8296 -2.4002 40 1 4.8095 9.4281 -0.8583 41 1 5.4657 10.7252 -1.8851 42 1 4.7887 8.4401 -5.4706 43 1 4.0439 9.5613 -4.3059 44 1 5.1382 10.1829 -5.5646 45 1 6.9409 8.8964 -7.5919 46 1 5.1385 2.5842 0.0002 47 1 6.0716 -0.6820 -0.0034 48 1 5.9059 0.8510 -0.8921 49 1 5.9072 0.8501 0.8879 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060378089.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:02 Heat of formation + Delta-G solvation = -56.839145 kcal Electronic energy + Delta-G solvation = -28755.388591 eV Core-core repulsion = 24684.584559 eV Total energy + Delta-G solvation = -4070.804032 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.82237 -39.10910 -38.67450 -37.62890 -35.56287 -34.57346 -32.42401 -31.68682 -30.58066 -29.36675 -28.53730 -27.49977 -26.89566 -25.90046 -24.28464 -23.31290 -22.43552 -21.41241 -21.16037 -19.22120 -18.60153 -17.28650 -17.00147 -16.86794 -16.34066 -16.10969 -15.59150 -15.48357 -15.11396 -15.00577 -14.76409 -14.69117 -14.23101 -13.93889 -13.54310 -13.41968 -13.06200 -12.89661 -12.66568 -12.41821 -12.30956 -12.15413 -12.08227 -11.78162 -11.52829 -11.43872 -11.36046 -11.33736 -11.14845 -10.97299 -10.79358 -10.69782 -10.51745 -10.32882 -9.92016 -9.78521 -8.98651 -8.91431 -8.54569 -8.40591 -7.98711 -6.71264 -5.64552 -3.09708 1.03235 1.18279 3.00740 3.03892 3.39308 3.42691 3.46996 3.49729 3.54348 3.74510 4.47904 4.52699 4.60274 4.70922 4.81076 4.86367 4.89406 4.96013 4.97662 5.04926 5.13923 5.19989 5.21346 5.28971 5.38429 5.42295 5.48412 5.53799 5.64498 5.87361 5.91643 5.92935 6.00519 6.01960 6.15967 6.23113 6.38036 6.43576 6.53670 6.73100 6.79169 6.94637 6.96959 7.33027 7.51699 7.82509 8.02097 8.13244 8.42868 9.07338 9.28389 9.91413 10.39431 11.38571 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017693 B = 0.002095 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.127318 B =13360.863534 C =13878.650231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.309 6.309 3 C 0.093 3.907 4 C -0.170 4.170 5 C -0.110 4.110 6 C -0.073 4.073 7 C -0.087 4.087 8 C 0.125 3.875 9 N -0.748 5.748 10 C 0.484 3.516 11 O -0.514 6.514 12 C 0.156 3.844 13 H 0.085 0.915 14 C -0.154 4.154 15 N -0.571 5.571 16 C 0.167 3.833 17 C -0.263 4.263 18 H 0.071 0.929 19 C 0.004 3.996 20 N -0.893 5.893 21 Si 0.905 3.095 22 H -0.288 1.288 23 H -0.279 1.279 24 H -0.292 1.292 25 C -0.165 4.165 26 C 0.101 3.899 27 O -0.308 6.308 28 C 0.025 3.975 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.135 0.865 33 H 0.129 0.871 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.392 0.608 39 H 0.053 0.947 40 H 0.046 0.954 41 H 0.063 0.937 42 H 0.042 0.958 43 H -0.005 1.005 44 H 0.040 0.960 45 H 0.252 0.748 46 H 0.136 0.864 47 H 0.100 0.900 48 H 0.057 0.943 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.591 -13.886 19.667 26.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.222 6.222 3 C 0.048 3.952 4 C -0.189 4.189 5 C -0.128 4.128 6 C -0.074 4.074 7 C -0.125 4.125 8 C 0.001 3.999 9 N -0.405 5.405 10 C 0.268 3.732 11 O -0.387 6.387 12 C 0.042 3.958 13 H 0.103 0.897 14 C -0.214 4.214 15 N -0.291 5.291 16 C 0.023 3.977 17 C -0.393 4.393 18 H 0.089 0.911 19 C -0.195 4.195 20 N -0.536 5.536 21 Si 0.735 3.265 22 H -0.215 1.215 23 H -0.205 1.205 24 H -0.218 1.218 25 C -0.184 4.184 26 C 0.055 3.945 27 O -0.222 6.222 28 C -0.070 4.070 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.153 0.847 33 H 0.146 0.854 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.225 0.775 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.060 0.940 43 H 0.013 0.987 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.154 0.846 47 H 0.118 0.882 48 H 0.076 0.924 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.747 -14.671 18.596 26.011 hybrid contribution 0.859 0.621 -0.070 1.062 sum -9.888 -14.050 18.526 25.267 Atomic orbital electron populations 1.23059 0.78661 1.03906 1.01237 1.86164 1.20936 1.25993 1.89141 1.18251 0.89142 0.85227 1.02599 1.21043 0.99921 0.91445 1.06461 1.20781 0.93813 0.97189 1.01041 1.19418 0.93315 0.94254 1.00390 1.20757 1.00929 0.93454 0.97347 1.21162 0.97997 0.85829 0.94915 1.46519 1.63853 1.20718 1.09370 1.23091 0.78317 0.88876 0.82870 1.90693 1.51293 1.65497 1.31175 1.20485 0.97015 0.88409 0.89880 0.89660 1.22202 1.00692 1.00307 0.98202 1.43880 1.04229 1.74671 1.06327 1.20785 0.85160 1.00525 0.91205 1.19239 0.86525 1.42660 0.90860 0.91106 1.25047 0.97863 0.99817 0.96805 1.70168 1.36011 1.45406 1.02056 0.86232 0.83044 0.78775 0.78404 1.21488 1.20450 1.21825 1.20991 1.00463 0.90543 1.06429 1.18218 0.88243 0.86095 1.01907 1.86158 1.18759 1.28238 1.89031 1.23091 0.78510 1.03905 1.01492 0.92783 0.92647 0.88288 0.84750 0.85357 0.90420 0.90203 0.91995 0.92088 0.77468 0.92776 0.93485 0.91751 0.93984 0.98680 0.94149 0.93763 0.84594 0.88200 0.92409 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.51 10.28 -34.24 -0.35 -3.86 16 3 C 0.09 1.09 6.70 -39.12 -0.26 0.82 16 4 C -0.17 -1.66 9.04 -39.46 -0.36 -2.02 16 5 C -0.11 -1.08 9.69 -39.57 -0.38 -1.46 16 6 C -0.07 -0.75 5.13 -104.61 -0.54 -1.29 16 7 C -0.09 -0.82 5.46 -27.88 -0.15 -0.97 16 8 C 0.13 1.69 5.66 -4.04 -0.02 1.67 16 9 N -0.75 -10.95 5.45 -60.29 -0.33 -11.28 16 10 C 0.48 9.89 7.05 -10.99 -0.08 9.81 16 11 O -0.51 -13.30 14.85 5.55 0.08 -13.22 16 12 C 0.16 3.19 3.13 -69.08 -0.22 2.97 16 13 H 0.09 1.65 7.85 -51.93 -0.41 1.24 16 14 C -0.15 -2.50 9.08 37.16 0.34 -2.17 16 15 N -0.57 -14.89 2.59 -174.81 -0.45 -15.34 16 16 C 0.17 4.47 7.64 59.85 0.46 4.93 16 17 C -0.26 -7.40 9.62 -15.06 -0.14 -7.54 16 18 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 19 C 0.00 0.12 5.04 -17.43 -0.09 0.04 16 20 N -0.89 -27.39 10.70 55.49 0.59 -26.79 16 21 Si 0.91 22.24 29.58 -169.99 -5.03 17.21 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 C -0.17 -1.78 8.69 -39.46 -0.34 -2.12 16 26 C 0.10 1.21 6.70 -39.12 -0.26 0.95 16 27 O -0.31 -3.68 10.28 -34.21 -0.35 -4.03 16 28 C 0.03 0.20 9.81 101.05 0.99 1.19 16 29 H 0.05 0.29 7.66 -51.92 -0.40 -0.11 16 30 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 31 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.13 0.97 6.30 -52.49 -0.33 0.64 16 33 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.08 0.64 8.08 -51.93 -0.42 0.22 16 35 H 0.08 0.64 8.08 -51.93 -0.42 0.22 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.39 4.35 7.89 -40.82 -0.32 4.03 16 39 H 0.05 0.93 6.66 -51.93 -0.35 0.58 16 40 H 0.05 0.57 7.56 -51.93 -0.39 0.18 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.04 1.27 6.73 -51.93 -0.35 0.92 16 43 H -0.01 -0.13 6.43 -51.93 -0.33 -0.46 16 44 H 0.04 1.13 7.17 -51.93 -0.37 0.75 16 45 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.14 1.24 6.30 -52.49 -0.33 0.91 16 47 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 49 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 LS Contribution 397.88 15.07 6.00 6.00 Total: -1.00 -37.28 397.88 -7.61 -44.89 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -7.70 Total: 0.45 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -0.07 Total: 5.98 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: -0.19 Total: -53.41 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.62 Total: -21.11 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.21 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.28 -7.61 -44.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060378089.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.953 kcal (2) G-P(sol) polarization free energy of solvation -37.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds