Wall clock time and date at job start Sat Apr 11 2020 04:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35999 * 116.99903 * 2 1 4 4 C 1.38567 * 120.07104 * 0.02907 * 3 2 1 5 5 C 1.38241 * 119.99712 * 179.70511 * 4 3 2 6 6 C 1.38253 * 120.14954 * 0.54240 * 5 4 3 7 7 C 1.50700 * 119.93267 * 179.72850 * 6 5 4 8 8 C 1.53001 * 109.46782 * 269.72986 * 7 6 5 9 9 N 1.46502 * 109.46882 * 179.97438 * 8 7 6 10 10 C 1.34773 * 119.99861 * 179.97438 * 9 8 7 11 11 O 1.21287 * 120.00246 * 0.02562 * 10 9 8 12 12 C 1.50698 * 119.99971 * 179.97438 * 10 9 8 13 13 H 1.09003 * 109.47350 * 60.00121 * 12 10 9 14 14 C 1.53003 * 109.47311 * 300.00191 * 12 10 9 15 15 N 1.46505 * 109.47573 * 180.02562 * 12 10 9 16 16 C 1.46498 * 119.99589 * 59.99863 * 15 12 10 17 17 C 1.36934 * 120.00233 * 240.00350 * 15 12 10 18 18 H 1.08000 * 120.00147 * 340.20688 * 17 15 12 19 19 C 1.38817 * 119.99602 * 160.20835 * 17 15 12 20 20 N 1.31615 * 120.00290 * 343.93867 * 19 17 15 21 21 Si 1.86803 * 119.99487 * 164.21459 * 19 17 15 22 22 H 1.48494 * 109.47008 * 265.13553 * 21 19 17 23 23 H 1.48506 * 109.47152 * 25.13787 * 21 19 17 24 24 H 1.48496 * 109.47040 * 145.13378 * 21 19 17 25 25 C 1.38243 * 120.14198 * 359.45261 * 6 5 4 26 26 C 1.38569 * 120.00285 * 0.27576 * 25 6 5 27 27 O 1.35991 * 120.07571 * 179.97438 * 26 25 6 28 28 C 1.42904 * 116.99925 * 359.97438 * 27 26 25 29 29 H 1.09008 * 109.47198 * 299.99534 * 1 2 3 30 30 H 1.08995 * 109.47460 * 59.99631 * 1 2 3 31 31 H 1.09004 * 109.47110 * 180.02562 * 1 2 3 32 32 H 1.07999 * 120.00228 * 359.97438 * 4 3 2 33 33 H 1.08002 * 119.92635 * 180.28971 * 5 4 3 34 34 H 1.08991 * 109.47393 * 149.72830 * 7 6 5 35 35 H 1.08999 * 109.46867 * 29.71977 * 7 6 5 36 36 H 1.08993 * 109.47293 * 59.99226 * 8 7 6 37 37 H 1.09004 * 109.46986 * 299.98926 * 8 7 6 38 38 H 0.96992 * 120.00034 * 359.97438 * 9 8 7 39 39 H 1.09003 * 109.46856 * 300.00232 * 14 12 10 40 40 H 1.08999 * 109.46745 * 59.99914 * 14 12 10 41 41 H 1.08998 * 109.47061 * 179.97438 * 14 12 10 42 42 H 1.09001 * 109.47643 * 265.36854 * 16 15 12 43 43 H 1.09005 * 109.47497 * 25.36236 * 16 15 12 44 44 H 1.08999 * 109.47184 * 145.36603 * 16 15 12 45 45 H 0.96994 * 119.99809 * 180.27621 * 20 19 17 46 46 H 1.07997 * 119.99974 * 180.25432 * 25 6 5 47 47 H 1.08997 * 109.46822 * 180.02562 * 28 27 26 48 48 H 1.08997 * 109.47482 * 300.00230 * 28 27 26 49 49 H 1.08999 * 109.46825 * 60.01111 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2931 2.3748 0.0006 5 6 1.9223 3.6057 0.0068 6 6 3.3028 3.6800 0.0010 7 6 3.9836 5.0245 0.0016 8 6 4.2138 5.4801 -1.4408 9 7 4.8750 6.7874 -1.4402 10 6 5.1796 7.3889 -2.6072 11 8 4.9059 6.8482 -3.6578 12 6 5.8593 8.7339 -2.6067 13 1 6.8172 8.6568 -2.0923 14 6 4.9739 9.7525 -1.8858 15 7 6.0799 9.1703 -3.9877 16 6 4.9398 9.3502 -4.8899 17 6 7.3516 9.4098 -4.4352 18 1 8.1474 9.5927 -3.7283 19 6 7.6180 9.4176 -5.7976 20 7 6.7529 8.8945 -6.6403 21 14 9.2080 10.1636 -6.4340 22 1 8.9690 11.5748 -6.8296 23 1 10.2391 10.1165 -5.3663 24 1 9.6798 9.3924 -7.6120 25 6 4.0602 2.5235 0.0005 26 6 3.4359 1.2864 0.0000 27 8 4.1795 0.1478 -0.0011 28 6 5.6004 0.3009 -0.0021 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 0.2146 2.3197 0.0007 33 1 1.3340 4.5115 0.0120 34 1 4.9417 4.9464 0.5153 35 1 3.3536 5.7504 0.5157 36 1 3.2557 5.5580 -1.9545 37 1 4.8437 4.7542 -1.9549 38 1 5.0935 7.2200 -0.6001 39 1 4.0160 9.8296 -2.4002 40 1 4.8095 9.4281 -0.8583 41 1 5.4657 10.7252 -1.8851 42 1 4.7887 8.4401 -5.4706 43 1 4.0439 9.5613 -4.3059 44 1 5.1382 10.1829 -5.5646 45 1 6.9409 8.8964 -7.5919 46 1 5.1385 2.5842 0.0002 47 1 6.0716 -0.6820 -0.0034 48 1 5.9059 0.8510 -0.8921 49 1 5.9072 0.8501 0.8879 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060378089.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:01 Heat of formation + Delta-G solvation = -82.845499 kcal Electronic energy + Delta-G solvation = -28756.516311 eV Core-core repulsion = 24684.584559 eV Total energy + Delta-G solvation = -4071.931752 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.58079 -40.68690 -39.42209 -38.48345 -37.31780 -35.97058 -34.09637 -32.98394 -31.32256 -30.97495 -29.52253 -28.09929 -28.04050 -27.70511 -25.80403 -24.61496 -23.18006 -22.96510 -22.11677 -20.73793 -19.39027 -18.89122 -18.06672 -17.77834 -17.65204 -17.23377 -17.03419 -16.59589 -16.22809 -16.15578 -15.72083 -15.59195 -15.43113 -15.24475 -14.87634 -14.74436 -14.62214 -14.07342 -13.88044 -13.73166 -13.37606 -13.08170 -13.03851 -13.00343 -12.91464 -12.73805 -12.53462 -12.37450 -12.34283 -12.22626 -12.10751 -12.08934 -11.96592 -11.85974 -11.77154 -11.72562 -10.79283 -10.43699 -9.94231 -9.70159 -8.82106 -8.75839 -7.79194 -5.27462 0.25969 0.39086 1.47101 1.49047 1.58576 1.92873 2.30868 2.34598 2.37826 2.53995 2.70777 3.34308 3.64475 3.75069 3.84216 4.05610 4.06522 4.11776 4.23056 4.24532 4.36105 4.37004 4.40242 4.41489 4.43148 4.45941 4.51073 4.59335 4.70273 4.72711 4.73644 4.77296 4.94401 5.01377 5.07835 5.13500 5.16646 5.27157 5.28475 5.49290 5.60298 5.62675 5.64664 5.71558 5.85246 6.09013 6.29241 6.59743 6.78916 7.13543 7.55596 7.88394 8.30983 9.23791 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017693 B = 0.002095 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.127318 B =13360.863534 C =13878.650231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.075 3.925 4 C -0.171 4.171 5 C -0.112 4.112 6 C -0.084 4.084 7 C -0.071 4.071 8 C 0.129 3.871 9 N -0.720 5.720 10 C 0.484 3.516 11 O -0.578 6.578 12 C 0.145 3.855 13 H 0.100 0.900 14 C -0.141 4.141 15 N -0.591 5.591 16 C 0.191 3.809 17 C -0.267 4.267 18 H 0.085 0.915 19 C -0.062 4.062 20 N -0.937 5.937 21 Si 0.976 3.024 22 H -0.285 1.285 23 H -0.260 1.260 24 H -0.302 1.302 25 C -0.170 4.170 26 C 0.075 3.925 27 O -0.332 6.332 28 C 0.019 3.981 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.115 0.885 32 H 0.158 0.842 33 H 0.149 0.851 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.048 0.952 37 H 0.037 0.963 38 H 0.415 0.585 39 H 0.042 0.958 40 H 0.096 0.904 41 H 0.066 0.934 42 H -0.003 1.003 43 H 0.021 0.979 44 H 0.015 0.985 45 H 0.245 0.755 46 H 0.147 0.853 47 H 0.117 0.883 48 H 0.055 0.945 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.586 -12.997 22.904 28.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.029 3.971 4 C -0.189 4.189 5 C -0.131 4.131 6 C -0.085 4.085 7 C -0.108 4.108 8 C 0.004 3.996 9 N -0.376 5.376 10 C 0.270 3.730 11 O -0.456 6.456 12 C 0.034 3.966 13 H 0.118 0.882 14 C -0.200 4.200 15 N -0.312 5.312 16 C 0.046 3.954 17 C -0.397 4.397 18 H 0.103 0.897 19 C -0.257 4.257 20 N -0.584 5.584 21 Si 0.803 3.197 22 H -0.211 1.211 23 H -0.184 1.184 24 H -0.229 1.229 25 C -0.189 4.189 26 C 0.030 3.970 27 O -0.247 6.247 28 C -0.075 4.075 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.133 0.867 32 H 0.175 0.825 33 H 0.167 0.833 34 H 0.114 0.886 35 H 0.124 0.876 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.253 0.747 39 H 0.061 0.939 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.015 0.985 43 H 0.040 0.960 44 H 0.034 0.966 45 H 0.054 0.946 46 H 0.164 0.836 47 H 0.135 0.865 48 H 0.074 0.926 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.742 -13.778 21.968 28.068 hybrid contribution 0.778 0.240 -0.927 1.234 sum -9.964 -13.538 21.040 26.930 Atomic orbital electron populations 1.23338 0.76588 1.05448 1.02257 1.86124 1.23238 1.26312 1.89237 1.18593 0.89496 0.85980 1.03010 1.21339 1.01109 0.90889 1.05596 1.21106 0.93904 0.97979 1.00069 1.19578 0.93757 0.94406 1.00767 1.20659 1.02427 0.93373 0.94383 1.21181 0.96461 0.84296 0.97644 1.46077 1.62007 1.20789 1.08680 1.22834 0.77995 0.88839 0.83337 1.90694 1.54194 1.66918 1.33749 1.20842 0.98954 0.89437 0.87405 0.88184 1.22079 0.98792 0.99034 1.00124 1.44059 1.03278 1.75723 1.08142 1.20341 0.86735 0.97270 0.91075 1.19728 0.87608 1.41094 0.91262 0.89702 1.25948 1.01450 1.00953 0.97310 1.70385 1.38389 1.47777 1.01804 0.85124 0.79410 0.77501 0.77620 1.21134 1.18440 1.22875 1.21179 1.01160 0.90427 1.06146 1.18557 0.88862 0.86578 1.02994 1.86116 1.20436 1.28843 1.89274 1.23304 0.76969 1.05257 1.02009 0.91305 0.91952 0.86650 0.82451 0.83295 0.88622 0.87631 0.93402 0.94414 0.74724 0.93934 0.88534 0.91514 0.98507 0.96050 0.96635 0.94598 0.83582 0.86490 0.92611 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -7.57 10.28 -79.68 -0.82 -8.39 16 3 C 0.07 1.72 6.70 22.57 0.15 1.87 16 4 C -0.17 -3.08 9.04 22.35 0.20 -2.88 16 5 C -0.11 -1.95 9.69 22.27 0.22 -1.74 16 6 C -0.08 -1.57 5.13 -19.86 -0.10 -1.68 16 7 C -0.07 -1.10 5.46 29.85 0.16 -0.94 16 8 C 0.13 3.24 5.66 86.38 0.49 3.72 16 9 N -0.72 -19.09 5.45 -463.06 -2.52 -21.62 16 10 C 0.48 19.27 7.05 87.66 0.62 19.89 16 11 O -0.58 -30.58 14.85 -3.05 -0.05 -30.63 16 12 C 0.15 5.66 3.13 44.24 0.14 5.80 16 13 H 0.10 3.58 7.85 -2.39 -0.02 3.56 16 14 C -0.14 -4.08 9.08 71.98 0.65 -3.43 16 15 N -0.59 -30.84 2.59 -706.96 -1.83 -32.67 16 16 C 0.19 10.50 7.64 127.77 0.98 11.48 16 17 C -0.27 -14.97 9.62 84.04 0.81 -14.16 16 18 H 0.09 4.41 7.81 -2.91 -0.02 4.38 16 19 C -0.06 -3.61 5.04 84.86 0.43 -3.18 16 20 N -0.94 -59.85 10.70 21.65 0.23 -59.62 16 21 Si 0.98 46.34 29.58 68.60 2.03 48.37 16 22 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 23 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 24 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 25 C -0.17 -3.51 8.69 22.35 0.19 -3.32 16 26 C 0.08 1.82 6.70 22.57 0.15 1.97 16 27 O -0.33 -8.07 10.28 -79.58 -0.82 -8.89 16 28 C 0.02 0.30 9.81 113.37 1.11 1.41 16 29 H 0.07 0.62 7.66 -2.38 -0.02 0.60 16 30 H 0.06 0.66 7.66 -2.39 -0.02 0.64 16 31 H 0.12 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.16 1.94 6.30 -2.91 -0.02 1.92 16 33 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 34 H 0.10 1.19 8.08 -2.39 -0.02 1.17 16 35 H 0.11 1.16 8.08 -2.39 -0.02 1.14 16 36 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.42 7.27 7.89 -92.71 -0.73 6.53 16 39 H 0.04 1.33 6.66 -2.39 -0.02 1.32 16 40 H 0.10 1.82 7.56 -2.39 -0.02 1.80 16 41 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.00 -0.22 6.73 -2.39 -0.02 -0.24 16 43 H 0.02 1.02 6.43 -2.38 -0.02 1.00 16 44 H 0.01 0.88 7.17 -2.39 -0.02 0.86 16 45 H 0.24 15.16 8.31 -92.71 -0.77 14.39 16 46 H 0.15 2.53 6.30 -2.91 -0.02 2.51 16 47 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.06 0.87 7.66 -2.39 -0.02 0.85 16 49 H 0.07 0.85 7.66 -2.39 -0.02 0.83 16 Total: -1.00 -86.39 397.88 3.76 -82.63 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.23 Total: 14.66 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: 7.31 Total: 16.15 kcal Atomic # 7 Polarization: -109.78 SS G_CDS: -4.12 Total: -113.90 kcal Atomic # 8 Polarization: -46.23 SS G_CDS: -1.68 Total: -47.91 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -86.39 3.76 -82.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060378089.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.212 kcal (2) G-P(sol) polarization free energy of solvation -86.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds