Wall clock time and date at job start Sat Apr 11 2020 04:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35998 * 116.99589 * 2 1 4 4 C 1.38564 * 120.07096 * 0.02708 * 3 2 1 5 5 C 1.38247 * 119.99359 * 179.70357 * 4 3 2 6 6 C 1.38258 * 120.14663 * 0.54794 * 5 4 3 7 7 C 1.50702 * 119.92319 * 179.72776 * 6 5 4 8 8 C 1.53002 * 109.46882 * 269.71966 * 7 6 5 9 9 N 1.46494 * 109.46789 * 180.02562 * 8 7 6 10 10 C 1.34780 * 119.99878 * 180.02562 * 9 8 7 11 11 O 1.21282 * 119.99998 * 0.02562 * 10 9 8 12 12 C 1.50702 * 119.99970 * 179.97438 * 10 9 8 13 13 H 1.08990 * 109.47439 * 300.00309 * 12 10 9 14 14 C 1.52998 * 109.46637 * 60.00664 * 12 10 9 15 15 N 1.46500 * 109.46884 * 179.97438 * 12 10 9 16 16 C 1.46499 * 120.00326 * 300.00608 * 15 12 10 17 17 C 1.36940 * 119.99738 * 120.00107 * 15 12 10 18 18 H 1.07998 * 119.99594 * 20.42761 * 17 15 12 19 19 C 1.38810 * 120.00234 * 200.41967 * 17 15 12 20 20 N 1.31622 * 119.99923 * 15.01366 * 19 17 15 21 21 Si 1.86796 * 120.00176 * 195.01424 * 19 17 15 22 22 H 1.48499 * 109.47295 * 85.00588 * 21 19 17 23 23 H 1.48504 * 109.47170 * 205.00191 * 21 19 17 24 24 H 1.48501 * 109.47382 * 325.00179 * 21 19 17 25 25 C 1.38243 * 120.14666 * 359.44773 * 6 5 4 26 26 C 1.38565 * 119.99549 * 0.27880 * 25 6 5 27 27 O 1.35992 * 120.06919 * 179.97438 * 26 25 6 28 28 C 1.42905 * 117.00168 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.46781 * 299.99186 * 1 2 3 30 30 H 1.08997 * 109.47155 * 59.99747 * 1 2 3 31 31 H 1.08999 * 109.46459 * 179.97438 * 1 2 3 32 32 H 1.07996 * 120.00571 * 359.97438 * 4 3 2 33 33 H 1.08003 * 119.92901 * 180.29706 * 5 4 3 34 34 H 1.09002 * 109.46588 * 149.72849 * 7 6 5 35 35 H 1.08993 * 109.47216 * 29.72921 * 7 6 5 36 36 H 1.09002 * 109.46789 * 60.01005 * 8 7 6 37 37 H 1.08999 * 109.47322 * 300.00693 * 8 7 6 38 38 H 0.97001 * 120.00343 * 0.02562 * 9 8 7 39 39 H 1.08994 * 109.46997 * 299.99060 * 14 12 10 40 40 H 1.08994 * 109.47925 * 59.99899 * 14 12 10 41 41 H 1.09006 * 109.47014 * 179.97438 * 14 12 10 42 42 H 1.09003 * 109.47286 * 95.17097 * 16 15 12 43 43 H 1.09004 * 109.46887 * 215.16742 * 16 15 12 44 44 H 1.08996 * 109.47321 * 335.16354 * 16 15 12 45 45 H 0.96998 * 120.00272 * 179.97438 * 20 19 17 46 46 H 1.07992 * 119.99882 * 180.25176 * 25 6 5 47 47 H 1.09005 * 109.46950 * 299.99595 * 28 27 26 48 48 H 1.08993 * 109.47349 * 59.99593 * 28 27 26 49 49 H 1.08999 * 109.47309 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2931 2.3748 0.0006 5 6 1.9223 3.6057 0.0068 6 6 3.3029 3.6799 0.0010 7 6 3.9835 5.0245 0.0016 8 6 4.2138 5.4801 -1.4408 9 7 4.8760 6.7868 -1.4402 10 6 5.1800 7.3888 -2.6072 11 8 4.9049 6.8488 -3.6577 12 6 5.8606 8.7333 -2.6066 13 1 5.2310 9.4591 -2.0921 14 6 7.2058 8.6235 -1.8859 15 7 6.0813 9.1695 -3.9876 16 6 6.9017 8.3578 -4.8900 17 6 5.5206 10.3360 -4.4351 18 1 5.2059 11.0896 -3.7284 19 6 5.3569 10.5498 -5.7968 20 7 5.4570 9.5423 -6.6379 21 14 4.9944 12.2672 -6.4357 22 1 6.2690 13.0070 -6.6175 23 1 4.2873 12.1719 -7.7381 24 1 4.1385 12.9882 -5.4595 25 6 4.0603 2.5235 0.0005 26 6 3.4359 1.2864 0.0000 27 8 4.1795 0.1478 -0.0011 28 6 5.6004 0.3009 -0.0010 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 0.2145 2.3196 0.0006 33 1 1.3341 4.5115 0.0120 34 1 4.9417 4.9464 0.5153 35 1 3.3536 5.7503 0.5158 36 1 3.2556 5.5582 -1.9545 37 1 4.8437 4.7541 -1.9550 38 1 5.0956 7.2189 -0.6000 39 1 7.0421 8.2989 -0.8584 40 1 7.8356 7.8978 -2.4004 41 1 7.6984 9.5959 -1.8859 42 1 6.2573 7.7037 -5.4774 43 1 7.4620 9.0115 -5.5585 44 1 7.5963 7.7544 -4.3056 45 1 5.3423 9.6916 -7.5894 46 1 5.1385 2.5842 0.0000 47 1 5.9065 0.8514 -0.8906 48 1 5.9066 0.8499 0.8894 49 1 6.0717 -0.6820 -0.0023 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060378090.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:06 Heat of formation + Delta-G solvation = -56.876441 kcal Electronic energy + Delta-G solvation = -28758.391936 eV Core-core repulsion = 24687.586287 eV Total energy + Delta-G solvation = -4070.805649 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.82524 -39.10742 -38.67894 -37.63012 -35.56047 -34.57235 -32.42247 -31.68548 -30.58225 -29.36627 -28.53786 -27.50855 -26.89687 -25.89898 -24.28239 -23.31166 -22.43936 -21.41204 -21.15941 -19.22044 -18.60169 -17.28626 -17.01606 -16.86069 -16.34497 -16.10917 -15.59097 -15.49052 -15.08470 -15.00403 -14.82735 -14.68173 -14.19246 -13.93790 -13.58236 -13.40097 -13.07601 -12.89128 -12.65499 -12.42273 -12.27398 -12.18823 -12.08652 -11.78463 -11.51170 -11.44676 -11.40026 -11.31217 -11.14764 -10.97343 -10.78566 -10.69691 -10.51924 -10.32921 -9.92566 -9.78617 -8.98528 -8.91182 -8.54614 -8.40700 -7.98867 -6.70479 -5.63855 -3.10305 1.03117 1.18307 3.00726 3.02907 3.39477 3.42857 3.46991 3.49409 3.54606 3.74633 4.47763 4.52880 4.60258 4.71092 4.80899 4.86884 4.88060 4.93758 4.98093 5.04950 5.13848 5.20286 5.21316 5.26706 5.38189 5.42797 5.48432 5.53627 5.65005 5.86984 5.92309 5.92617 5.99937 6.03213 6.15996 6.23022 6.38165 6.43484 6.53680 6.73114 6.78686 6.94816 6.96997 7.32624 7.51597 7.82616 8.02511 8.13682 8.43497 9.07543 9.28785 9.91541 10.39706 11.38876 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018501 B = 0.002075 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.092079 B =13491.612816 C =14005.501789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.309 6.309 3 C 0.093 3.907 4 C -0.170 4.170 5 C -0.109 4.109 6 C -0.073 4.073 7 C -0.087 4.087 8 C 0.126 3.874 9 N -0.748 5.748 10 C 0.484 3.516 11 O -0.514 6.514 12 C 0.156 3.844 13 H 0.086 0.914 14 C -0.154 4.154 15 N -0.571 5.571 16 C 0.168 3.832 17 C -0.264 4.264 18 H 0.071 0.929 19 C 0.005 3.995 20 N -0.894 5.894 21 Si 0.906 3.094 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.280 1.280 25 C -0.166 4.166 26 C 0.100 3.900 27 O -0.308 6.308 28 C 0.025 3.975 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.135 0.865 33 H 0.129 0.871 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.392 0.608 39 H 0.046 0.954 40 H 0.053 0.947 41 H 0.063 0.937 42 H 0.043 0.957 43 H 0.039 0.961 44 H -0.006 1.006 45 H 0.252 0.748 46 H 0.136 0.864 47 H 0.057 0.943 48 H 0.054 0.946 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.521 -16.944 19.641 26.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.222 6.222 3 C 0.048 3.952 4 C -0.188 4.188 5 C -0.128 4.128 6 C -0.074 4.074 7 C -0.125 4.125 8 C 0.001 3.999 9 N -0.405 5.405 10 C 0.268 3.732 11 O -0.386 6.386 12 C 0.042 3.958 13 H 0.104 0.896 14 C -0.214 4.214 15 N -0.291 5.291 16 C 0.024 3.976 17 C -0.393 4.393 18 H 0.089 0.911 19 C -0.195 4.195 20 N -0.537 5.537 21 Si 0.736 3.264 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.206 1.206 25 C -0.184 4.184 26 C 0.055 3.945 27 O -0.222 6.222 28 C -0.070 4.070 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.153 0.847 33 H 0.147 0.853 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.225 0.775 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.013 0.987 45 H 0.063 0.937 46 H 0.154 0.846 47 H 0.075 0.925 48 H 0.073 0.927 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.702 -17.720 18.566 26.092 hybrid contribution -0.331 1.218 -0.064 1.264 sum -5.033 -16.501 18.502 25.297 Atomic orbital electron populations 1.23061 0.78640 1.03907 1.01263 1.86164 1.20954 1.25987 1.89142 1.18249 0.89146 0.85229 1.02582 1.21051 0.99951 0.91442 1.06401 1.20799 0.93840 0.97226 1.00906 1.19421 0.93322 0.94252 1.00399 1.20758 1.00905 0.93473 0.97348 1.21160 0.98068 0.85760 0.94912 1.46522 1.63809 1.20767 1.09372 1.23091 0.78471 0.88722 0.82867 1.90692 1.51518 1.65257 1.31178 1.20486 0.94488 0.90920 0.89894 0.89641 1.22202 0.98569 1.02439 0.98197 1.43868 1.55493 1.23413 1.06333 1.20784 0.92029 0.93624 0.91193 1.19216 1.37119 0.92052 0.90936 0.91149 1.25067 1.00247 0.97329 0.96850 1.70158 1.52886 1.28501 1.02139 0.86260 0.77845 0.84114 0.78171 1.21402 1.21777 1.20564 1.20974 1.00407 0.90533 1.06516 1.18209 0.88233 0.86077 1.01991 1.86159 1.18725 1.28255 1.89059 1.23085 0.78564 1.03877 1.01445 0.92765 0.92634 0.88286 0.84730 0.85318 0.90452 0.90173 0.91940 0.92147 0.77469 0.93491 0.92800 0.91754 0.93895 0.94258 0.98705 0.93739 0.84624 0.92458 0.92695 0.88216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.51 10.28 -34.24 -0.35 -3.86 16 3 C 0.09 1.09 6.70 -39.12 -0.26 0.83 16 4 C -0.17 -1.68 9.04 -39.46 -0.36 -2.04 16 5 C -0.11 -1.09 9.69 -39.57 -0.38 -1.47 16 6 C -0.07 -0.76 5.13 -104.61 -0.54 -1.29 16 7 C -0.09 -0.82 5.46 -27.88 -0.15 -0.97 16 8 C 0.13 1.69 5.66 -4.04 -0.02 1.67 16 9 N -0.75 -10.96 5.45 -60.29 -0.33 -11.29 16 10 C 0.48 9.90 7.05 -10.98 -0.08 9.82 16 11 O -0.51 -13.30 14.86 5.56 0.08 -13.22 16 12 C 0.16 3.19 3.13 -69.08 -0.22 2.97 16 13 H 0.09 1.65 7.85 -51.93 -0.41 1.25 16 14 C -0.15 -2.51 9.08 37.16 0.34 -2.17 16 15 N -0.57 -14.89 2.59 -174.82 -0.45 -15.35 16 16 C 0.17 4.48 7.62 59.85 0.46 4.94 16 17 C -0.26 -7.41 9.61 -15.06 -0.14 -7.56 16 18 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 19 C 0.00 0.14 5.06 -17.43 -0.09 0.05 16 20 N -0.89 -27.40 10.67 55.49 0.59 -26.81 16 21 Si 0.91 22.25 29.58 -169.99 -5.03 17.22 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 25 C -0.17 -1.75 8.69 -39.46 -0.34 -2.09 16 26 C 0.10 1.19 6.70 -39.12 -0.26 0.93 16 27 O -0.31 -3.62 10.28 -34.22 -0.35 -3.97 16 28 C 0.03 0.19 9.81 101.05 0.99 1.18 16 29 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 30 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 31 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.13 1.00 6.30 -52.49 -0.33 0.67 16 33 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 34 H 0.08 0.62 8.08 -51.93 -0.42 0.20 16 35 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.39 4.36 7.89 -40.82 -0.32 4.03 16 39 H 0.05 0.57 7.56 -51.93 -0.39 0.18 16 40 H 0.05 0.92 6.66 -51.93 -0.35 0.58 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.04 1.30 6.71 -51.93 -0.35 0.95 16 43 H 0.04 1.10 7.22 -51.93 -0.38 0.72 16 44 H -0.01 -0.13 6.44 -51.93 -0.33 -0.47 16 45 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.14 1.19 6.30 -52.49 -0.33 0.86 16 47 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 48 H 0.05 0.34 7.66 -51.93 -0.40 -0.05 16 49 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 397.91 15.07 6.00 6.00 Total: -1.00 -37.28 397.91 -7.61 -44.89 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -7.70 Total: 0.42 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -0.07 Total: 5.97 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -0.19 Total: -53.45 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.62 Total: -21.05 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.28 -7.61 -44.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060378090.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.986 kcal (2) G-P(sol) polarization free energy of solvation -37.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds