Wall clock time and date at job start Sat Apr 11 2020 04:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35998 * 116.99589 * 2 1 4 4 C 1.38564 * 120.07096 * 0.02708 * 3 2 1 5 5 C 1.38247 * 119.99359 * 179.70357 * 4 3 2 6 6 C 1.38258 * 120.14663 * 0.54794 * 5 4 3 7 7 C 1.50702 * 119.92319 * 179.72776 * 6 5 4 8 8 C 1.53002 * 109.46882 * 269.71966 * 7 6 5 9 9 N 1.46494 * 109.46789 * 180.02562 * 8 7 6 10 10 C 1.34780 * 119.99878 * 180.02562 * 9 8 7 11 11 O 1.21282 * 119.99998 * 0.02562 * 10 9 8 12 12 C 1.50702 * 119.99970 * 179.97438 * 10 9 8 13 13 H 1.08990 * 109.47439 * 300.00309 * 12 10 9 14 14 C 1.52998 * 109.46637 * 60.00664 * 12 10 9 15 15 N 1.46500 * 109.46884 * 179.97438 * 12 10 9 16 16 C 1.46499 * 120.00326 * 300.00608 * 15 12 10 17 17 C 1.36940 * 119.99738 * 120.00107 * 15 12 10 18 18 H 1.07998 * 119.99594 * 20.42761 * 17 15 12 19 19 C 1.38810 * 120.00234 * 200.41967 * 17 15 12 20 20 N 1.31622 * 119.99923 * 15.01366 * 19 17 15 21 21 Si 1.86796 * 120.00176 * 195.01424 * 19 17 15 22 22 H 1.48499 * 109.47295 * 85.00588 * 21 19 17 23 23 H 1.48504 * 109.47170 * 205.00191 * 21 19 17 24 24 H 1.48501 * 109.47382 * 325.00179 * 21 19 17 25 25 C 1.38243 * 120.14666 * 359.44773 * 6 5 4 26 26 C 1.38565 * 119.99549 * 0.27880 * 25 6 5 27 27 O 1.35992 * 120.06919 * 179.97438 * 26 25 6 28 28 C 1.42905 * 117.00168 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.46781 * 299.99186 * 1 2 3 30 30 H 1.08997 * 109.47155 * 59.99747 * 1 2 3 31 31 H 1.08999 * 109.46459 * 179.97438 * 1 2 3 32 32 H 1.07996 * 120.00571 * 359.97438 * 4 3 2 33 33 H 1.08003 * 119.92901 * 180.29706 * 5 4 3 34 34 H 1.09002 * 109.46588 * 149.72849 * 7 6 5 35 35 H 1.08993 * 109.47216 * 29.72921 * 7 6 5 36 36 H 1.09002 * 109.46789 * 60.01005 * 8 7 6 37 37 H 1.08999 * 109.47322 * 300.00693 * 8 7 6 38 38 H 0.97001 * 120.00343 * 0.02562 * 9 8 7 39 39 H 1.08994 * 109.46997 * 299.99060 * 14 12 10 40 40 H 1.08994 * 109.47925 * 59.99899 * 14 12 10 41 41 H 1.09006 * 109.47014 * 179.97438 * 14 12 10 42 42 H 1.09003 * 109.47286 * 95.17097 * 16 15 12 43 43 H 1.09004 * 109.46887 * 215.16742 * 16 15 12 44 44 H 1.08996 * 109.47321 * 335.16354 * 16 15 12 45 45 H 0.96998 * 120.00272 * 179.97438 * 20 19 17 46 46 H 1.07992 * 119.99882 * 180.25176 * 25 6 5 47 47 H 1.09005 * 109.46950 * 299.99595 * 28 27 26 48 48 H 1.08993 * 109.47349 * 59.99593 * 28 27 26 49 49 H 1.08999 * 109.47309 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2931 2.3748 0.0006 5 6 1.9223 3.6057 0.0068 6 6 3.3029 3.6799 0.0010 7 6 3.9835 5.0245 0.0016 8 6 4.2138 5.4801 -1.4408 9 7 4.8760 6.7868 -1.4402 10 6 5.1800 7.3888 -2.6072 11 8 4.9049 6.8488 -3.6577 12 6 5.8606 8.7333 -2.6066 13 1 5.2310 9.4591 -2.0921 14 6 7.2058 8.6235 -1.8859 15 7 6.0813 9.1695 -3.9876 16 6 6.9017 8.3578 -4.8900 17 6 5.5206 10.3360 -4.4351 18 1 5.2059 11.0896 -3.7284 19 6 5.3569 10.5498 -5.7968 20 7 5.4570 9.5423 -6.6379 21 14 4.9944 12.2672 -6.4357 22 1 6.2690 13.0070 -6.6175 23 1 4.2873 12.1719 -7.7381 24 1 4.1385 12.9882 -5.4595 25 6 4.0603 2.5235 0.0005 26 6 3.4359 1.2864 0.0000 27 8 4.1795 0.1478 -0.0011 28 6 5.6004 0.3009 -0.0010 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 0.2145 2.3196 0.0006 33 1 1.3341 4.5115 0.0120 34 1 4.9417 4.9464 0.5153 35 1 3.3536 5.7503 0.5158 36 1 3.2556 5.5582 -1.9545 37 1 4.8437 4.7541 -1.9550 38 1 5.0956 7.2189 -0.6000 39 1 7.0421 8.2989 -0.8584 40 1 7.8356 7.8978 -2.4004 41 1 7.6984 9.5959 -1.8859 42 1 6.2573 7.7037 -5.4774 43 1 7.4620 9.0115 -5.5585 44 1 7.5963 7.7544 -4.3056 45 1 5.3423 9.6916 -7.5894 46 1 5.1385 2.5842 0.0000 47 1 5.9065 0.8514 -0.8906 48 1 5.9066 0.8499 0.8894 49 1 6.0717 -0.6820 -0.0023 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060378090.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:04 Heat of formation + Delta-G solvation = -82.855455 kcal Electronic energy + Delta-G solvation = -28759.518471 eV Core-core repulsion = 24687.586287 eV Total energy + Delta-G solvation = -4071.932184 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.58039 -40.68598 -39.41919 -38.48182 -37.31567 -35.97026 -34.09497 -32.98350 -31.32186 -30.97404 -29.51981 -28.09211 -28.04049 -27.70578 -25.80269 -24.61499 -23.18027 -22.96374 -22.11647 -20.73664 -19.38916 -18.89065 -18.05834 -17.79364 -17.64260 -17.23014 -17.03099 -16.58300 -16.24051 -16.15269 -15.71971 -15.63094 -15.38425 -15.19887 -14.93230 -14.76676 -14.59304 -14.06245 -13.88376 -13.72625 -13.38222 -13.07966 -13.03358 -13.00118 -12.91484 -12.72076 -12.53481 -12.38013 -12.34101 -12.23802 -12.09741 -12.08379 -11.96975 -11.87089 -11.77301 -11.72763 -10.78690 -10.43689 -9.94068 -9.70182 -8.81548 -8.75680 -7.78450 -5.28057 0.25962 0.38839 1.47230 1.49974 1.58288 1.93016 2.30997 2.35076 2.37782 2.54159 2.70638 3.35002 3.64587 3.75126 3.84131 4.05303 4.07432 4.10721 4.22265 4.26469 4.36562 4.37983 4.39652 4.41998 4.43030 4.46104 4.50781 4.59680 4.71518 4.72327 4.73385 4.76948 4.95127 5.00872 5.07220 5.13400 5.16443 5.26920 5.28190 5.48883 5.60335 5.62813 5.64808 5.71028 5.85660 6.09301 6.29741 6.59870 6.79002 7.13909 7.55701 7.88521 8.31276 9.24073 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018501 B = 0.002075 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.092079 B =13491.612816 C =14005.501789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.074 3.926 4 C -0.172 4.172 5 C -0.115 4.115 6 C -0.084 4.084 7 C -0.071 4.071 8 C 0.129 3.871 9 N -0.720 5.720 10 C 0.485 3.515 11 O -0.578 6.578 12 C 0.145 3.855 13 H 0.101 0.899 14 C -0.141 4.141 15 N -0.591 5.591 16 C 0.191 3.809 17 C -0.268 4.268 18 H 0.085 0.915 19 C -0.061 4.061 20 N -0.938 5.938 21 Si 0.976 3.024 22 H -0.281 1.281 23 H -0.301 1.301 24 H -0.263 1.263 25 C -0.168 4.168 26 C 0.077 3.923 27 O -0.332 6.332 28 C 0.018 3.982 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.116 0.884 32 H 0.156 0.844 33 H 0.146 0.854 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.041 0.959 37 H 0.044 0.956 38 H 0.415 0.585 39 H 0.096 0.904 40 H 0.041 0.959 41 H 0.066 0.934 42 H -0.003 1.003 43 H 0.014 0.986 44 H 0.020 0.980 45 H 0.245 0.755 46 H 0.150 0.850 47 H 0.057 0.943 48 H 0.069 0.931 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.670 -15.967 22.861 28.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.029 3.971 4 C -0.190 4.190 5 C -0.133 4.133 6 C -0.085 4.085 7 C -0.108 4.108 8 C 0.004 3.996 9 N -0.376 5.376 10 C 0.270 3.730 11 O -0.455 6.455 12 C 0.034 3.966 13 H 0.119 0.881 14 C -0.200 4.200 15 N -0.312 5.312 16 C 0.046 3.954 17 C -0.398 4.398 18 H 0.103 0.897 19 C -0.256 4.256 20 N -0.584 5.584 21 Si 0.804 3.196 22 H -0.208 1.208 23 H -0.228 1.228 24 H -0.187 1.187 25 C -0.187 4.187 26 C 0.032 3.968 27 O -0.247 6.247 28 C -0.076 4.076 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.134 0.866 32 H 0.174 0.826 33 H 0.163 0.837 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.253 0.747 39 H 0.115 0.885 40 H 0.060 0.940 41 H 0.085 0.915 42 H 0.016 0.984 43 H 0.033 0.967 44 H 0.039 0.961 45 H 0.054 0.946 46 H 0.168 0.832 47 H 0.076 0.924 48 H 0.087 0.913 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.850 -16.738 21.920 28.003 hybrid contribution -0.325 0.793 -0.916 1.255 sum -5.175 -15.945 21.004 26.874 Atomic orbital electron populations 1.23333 0.76634 1.05445 1.02206 1.86124 1.23189 1.26289 1.89242 1.18590 0.89584 0.85904 1.03032 1.21323 1.01071 0.90946 1.05675 1.21101 0.94076 0.97894 1.00239 1.19577 0.93651 0.94510 1.00742 1.20660 1.02533 0.93264 0.94387 1.21179 0.96373 0.84389 0.97640 1.46079 1.61937 1.20865 1.08681 1.22834 0.78047 0.88786 0.83336 1.90693 1.54276 1.66821 1.33753 1.20839 0.97198 0.91177 0.87413 0.88135 1.22080 0.95324 1.02521 1.00118 1.44044 1.55739 1.23279 1.08145 1.20337 0.91407 0.92568 0.91055 1.19710 1.35500 0.93205 0.91351 0.89710 1.25972 1.01156 1.01141 0.97360 1.70381 1.55349 1.30774 1.01869 0.85148 0.77785 0.79514 0.77137 1.20804 1.22849 1.18740 1.21177 1.01244 0.90242 1.06018 1.18539 0.88777 0.86629 1.02900 1.86119 1.20520 1.28794 1.89254 1.23319 0.76880 1.05294 1.02094 0.91357 0.92039 0.86601 0.82622 0.83654 0.88187 0.88057 0.94030 0.93788 0.74724 0.88549 0.93986 0.91516 0.98417 0.96735 0.96126 0.94602 0.83231 0.92445 0.91292 0.86502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -7.58 10.28 -79.66 -0.82 -8.39 16 3 C 0.07 1.71 6.70 22.57 0.15 1.87 16 4 C -0.17 -3.20 9.04 22.35 0.20 -3.00 16 5 C -0.11 -2.08 9.69 22.28 0.22 -1.87 16 6 C -0.08 -1.57 5.13 -19.86 -0.10 -1.67 16 7 C -0.07 -1.10 5.46 29.85 0.16 -0.94 16 8 C 0.13 3.24 5.66 86.38 0.49 3.73 16 9 N -0.72 -19.11 5.45 -463.06 -2.52 -21.63 16 10 C 0.48 19.28 7.05 87.66 0.62 19.90 16 11 O -0.58 -30.59 14.86 -3.04 -0.05 -30.63 16 12 C 0.15 5.67 3.13 44.25 0.14 5.81 16 13 H 0.10 3.59 7.85 -2.39 -0.02 3.58 16 14 C -0.14 -4.09 9.08 71.98 0.65 -3.44 16 15 N -0.59 -30.86 2.59 -707.00 -1.83 -32.69 16 16 C 0.19 10.55 7.62 127.77 0.97 11.52 16 17 C -0.27 -15.01 9.61 84.03 0.81 -14.20 16 18 H 0.09 4.40 7.81 -2.91 -0.02 4.37 16 19 C -0.06 -3.59 5.06 84.86 0.43 -3.16 16 20 N -0.94 -59.85 10.67 21.65 0.23 -59.62 16 21 Si 0.98 46.31 29.58 68.60 2.03 48.34 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 23 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 24 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 25 C -0.17 -3.35 8.69 22.35 0.19 -3.16 16 26 C 0.08 1.82 6.70 22.57 0.15 1.97 16 27 O -0.33 -7.84 10.28 -79.59 -0.82 -8.66 16 28 C 0.02 0.27 9.81 113.37 1.11 1.38 16 29 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 30 H 0.06 0.68 7.66 -2.39 -0.02 0.67 16 31 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.16 2.05 6.30 -2.91 -0.02 2.04 16 33 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 34 H 0.10 1.15 8.08 -2.39 -0.02 1.13 16 35 H 0.10 1.20 8.08 -2.39 -0.02 1.18 16 36 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.42 7.27 7.89 -92.71 -0.73 6.54 16 39 H 0.10 1.83 7.56 -2.39 -0.02 1.81 16 40 H 0.04 1.32 6.66 -2.39 -0.02 1.31 16 41 H 0.07 1.93 8.14 -2.38 -0.02 1.92 16 42 H 0.00 -0.16 6.71 -2.39 -0.02 -0.18 16 43 H 0.01 0.82 7.22 -2.38 -0.02 0.80 16 44 H 0.02 0.99 6.44 -2.39 -0.02 0.97 16 45 H 0.24 15.17 8.31 -92.71 -0.77 14.40 16 46 H 0.15 2.38 6.30 -2.91 -0.02 2.36 16 47 H 0.06 0.81 7.66 -2.38 -0.02 0.79 16 48 H 0.07 0.78 7.66 -2.39 -0.02 0.76 16 49 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -86.25 397.91 3.76 -82.49 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.23 Total: 14.72 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: 7.31 Total: 16.08 kcal Atomic # 7 Polarization: -109.82 SS G_CDS: -4.12 Total: -113.94 kcal Atomic # 8 Polarization: -46.00 SS G_CDS: -1.68 Total: -47.69 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -86.25 3.76 -82.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060378090.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.369 kcal (2) G-P(sol) polarization free energy of solvation -86.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds