Wall clock time and date at job start Sat Apr 11 2020 04:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47092 * 2 1 4 4 C 1.46500 * 119.99656 * 269.99636 * 3 2 1 5 5 C 1.50694 * 109.47273 * 270.00082 * 4 3 2 6 6 H 1.08003 * 120.00247 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00292 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99534 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00231 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46967 * 89.99820 * 9 7 5 11 11 H 1.48492 * 109.47248 * 210.00276 * 9 7 5 12 12 H 1.48505 * 109.47068 * 330.00224 * 9 7 5 13 13 C 1.34768 * 120.00329 * 89.99693 * 3 2 1 14 14 O 1.21283 * 120.00373 * 180.02562 * 13 3 2 15 15 C 1.50703 * 120.00290 * 359.97438 * 13 3 2 16 16 O 1.45196 * 109.47396 * 179.97438 * 15 13 3 17 17 C 1.34784 * 116.99831 * 180.02562 * 16 15 13 18 18 O 1.21552 * 120.00134 * 359.72899 * 17 16 15 19 19 C 1.47118 * 120.00116 * 180.02562 * 17 16 15 20 20 C 1.46736 * 127.01871 * 0.02562 * 19 17 16 21 21 C 1.34432 * 106.37306 * 179.97438 * 20 19 17 22 22 C 1.50700 * 125.46060 * 180.02562 * 21 20 19 23 23 N 1.36429 * 109.08362 * 0.02562 * 21 20 19 24 24 C 1.46507 * 124.80852 * 179.97438 * 23 21 20 25 25 C 1.52995 * 109.47069 * 89.97322 * 24 23 21 26 26 C 1.34624 * 110.38120 * 359.72103 * 23 21 20 27 27 C 1.50698 * 125.89863 * 180.28790 * 26 23 21 28 28 H 1.08994 * 109.47302 * 300.00265 * 1 2 3 29 29 H 1.09000 * 109.46706 * 60.00567 * 1 2 3 30 30 H 1.09002 * 109.47251 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47302 * 239.99734 * 2 1 3 32 32 H 1.09000 * 109.46706 * 119.99433 * 2 1 3 33 33 H 1.08999 * 109.47428 * 30.00002 * 4 3 2 34 34 H 1.09005 * 109.47258 * 149.99781 * 4 3 2 35 35 H 0.97002 * 119.99436 * 179.97438 * 8 7 5 36 36 H 1.09012 * 109.46606 * 59.99977 * 15 13 3 37 37 H 1.08996 * 109.47079 * 300.00556 * 15 13 3 38 38 H 1.07998 * 126.81810 * 0.03766 * 20 19 17 39 39 H 1.08994 * 109.47233 * 89.98041 * 22 21 20 40 40 H 1.09001 * 109.47240 * 209.97794 * 22 21 20 41 41 H 1.09001 * 109.47281 * 329.97601 * 22 21 20 42 42 H 1.08997 * 109.47131 * 209.97012 * 24 23 21 43 43 H 1.08998 * 109.47148 * 329.97438 * 24 23 21 44 44 H 1.09001 * 109.47328 * 299.99996 * 25 24 23 45 45 H 1.09003 * 109.47480 * 59.99886 * 25 24 23 46 46 H 1.09005 * 109.47261 * 180.02562 * 25 24 23 47 47 H 1.09006 * 109.46942 * 270.21527 * 27 26 23 48 48 H 1.09001 * 109.47399 * 30.20998 * 27 26 23 49 49 H 1.08996 * 109.47538 * 150.21015 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2308 -1.0957 7 6 4.1495 2.3903 -2.8775 8 7 3.3495 3.1263 -3.6176 9 14 5.9139 2.0973 -3.4163 10 1 5.9778 0.8766 -4.2594 11 1 6.3930 3.2650 -4.1987 12 1 6.7738 1.9174 -2.2190 13 6 2.2429 2.0166 1.1671 14 8 2.6468 3.1602 1.1671 15 6 1.9912 1.3065 2.4723 16 8 2.3063 2.1959 3.5758 17 6 2.1347 1.7102 4.8214 18 8 1.7279 0.5760 4.9807 19 6 2.4335 2.5552 5.9881 20 6 2.9222 3.9387 5.9750 21 6 3.0520 4.3069 7.2614 22 6 3.5272 5.6540 7.7415 23 7 2.6848 3.2656 8.0626 24 6 2.6952 3.2933 9.5274 25 6 1.3388 3.7837 10.0378 26 6 2.3063 2.2108 7.3166 27 6 1.8290 0.8819 7.8432 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.5818 1.6876 -2.0284 34 1 2.0955 3.1410 -1.1386 35 1 3.6758 3.5173 -4.4432 36 1 2.6211 0.4187 2.5303 37 1 0.9432 1.0127 2.5298 38 1 3.1343 4.5420 5.1047 39 1 2.6727 6.3207 7.8569 40 1 4.0317 5.5406 8.7010 41 1 4.2209 6.0752 7.0138 42 1 2.8856 2.2900 9.9085 43 1 3.4787 3.9679 9.8725 44 1 1.1483 4.7871 9.6568 45 1 0.5552 3.1092 9.6927 46 1 1.3467 3.8048 11.1276 47 1 2.6816 0.2155 7.9740 48 1 1.3319 1.0283 8.8021 49 1 1.1283 0.4406 7.1344 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060904663.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:09 Heat of formation + Delta-G solvation = -81.486946 kcal Electronic energy + Delta-G solvation = -29057.811118 eV Core-core repulsion = 24985.938277 eV Total energy + Delta-G solvation = -4071.872841 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.70628 -39.96183 -38.72149 -36.07797 -35.19031 -34.46484 -32.90675 -32.78872 -30.15933 -29.99040 -29.45824 -28.81204 -26.57326 -25.21544 -24.07187 -23.02017 -22.67687 -21.97392 -20.41568 -18.91287 -18.34901 -17.52361 -16.55338 -16.44738 -16.30922 -16.19073 -15.64046 -15.52954 -15.18891 -14.72720 -14.34684 -14.08410 -13.79147 -13.51624 -13.42390 -13.40412 -13.31928 -13.11387 -12.89401 -12.73171 -12.66569 -12.34298 -12.29430 -12.03907 -11.98941 -11.88152 -11.77192 -11.59765 -11.48650 -11.17428 -10.88526 -10.78428 -10.52783 -10.36115 -10.28645 -10.09686 -9.60544 -8.88239 -8.80740 -8.40394 -8.16458 -7.67232 -6.01301 -4.05731 1.43910 2.20463 2.35229 2.91323 3.31707 3.33302 3.38754 3.40450 3.46215 4.03888 4.18706 4.35975 4.47259 4.48232 4.60080 4.66504 4.86736 4.99905 5.01867 5.06627 5.07782 5.17000 5.29913 5.33322 5.34037 5.34350 5.37063 5.47628 5.48793 5.55367 5.65189 5.66486 5.77438 5.81025 5.82048 6.04660 6.09815 6.25596 6.51388 6.60160 6.67577 6.91283 7.01917 7.07586 7.46293 7.55018 7.94923 8.06023 8.26021 8.38710 8.91880 9.07754 9.59073 11.06849 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016099 B = 0.002410 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.769995 B =11614.264230 C =12662.714997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.594 5.594 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.519 6.519 15 C 0.052 3.948 16 O -0.323 6.323 17 C 0.541 3.459 18 O -0.529 6.529 19 C -0.222 4.222 20 C -0.133 4.133 21 C -0.001 4.001 22 C -0.082 4.082 23 N -0.433 5.433 24 C 0.093 3.907 25 C -0.171 4.171 26 C 0.114 3.886 27 C -0.095 4.095 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.035 0.965 34 H 0.045 0.955 35 H 0.263 0.737 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.155 0.845 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.064 0.936 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.826 -2.226 27.962 28.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.327 5.327 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.292 3.708 14 O -0.394 6.394 15 C -0.026 4.026 16 O -0.238 6.238 17 C 0.388 3.612 18 O -0.421 6.421 19 C -0.230 4.230 20 C -0.156 4.156 21 C -0.107 4.107 22 C -0.139 4.139 23 N -0.110 5.110 24 C -0.028 4.028 25 C -0.229 4.229 26 C -0.004 4.004 27 C -0.152 4.152 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.173 0.827 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.102 0.898 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.094 0.906 47 H 0.097 0.903 48 H 0.083 0.917 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.706 -1.760 28.126 28.572 hybrid contribution 0.912 -0.373 -0.508 1.109 sum -3.793 -2.133 27.618 27.959 Atomic orbital electron populations 1.22233 0.96608 1.01618 1.02404 1.21494 0.93711 0.84017 1.02970 1.48193 1.64019 1.13389 1.07142 1.19311 0.96394 0.93722 0.77646 1.21442 0.96891 1.31911 1.06256 0.92400 1.24936 0.97886 0.94906 0.96403 1.69935 1.35686 1.33420 1.14341 0.86488 0.84685 0.77630 0.78583 1.20665 1.21097 1.19864 1.19746 0.79587 0.87143 0.84327 1.90707 1.44409 1.17524 1.86769 1.22893 1.02498 0.92675 0.84492 1.86639 1.78855 1.44321 1.13979 1.20135 0.73676 0.84706 0.82634 1.90767 1.44787 1.19704 1.86807 1.19294 1.18206 0.96269 0.89257 1.21994 1.03775 0.94120 0.95738 1.20218 1.09061 0.91442 0.89978 1.20321 1.01288 0.90758 1.01533 1.43611 1.50391 1.10811 1.06223 1.21901 0.99738 1.03961 0.77177 1.22176 0.96298 1.02610 1.01773 1.20447 1.00123 0.90486 0.89314 1.20596 1.02371 0.90680 1.01572 0.93081 0.91857 0.91964 0.89520 0.91718 0.94693 0.93729 0.92730 0.88887 0.88948 0.82709 0.91067 0.91983 0.89812 0.89002 0.88827 0.91598 0.91685 0.90565 0.90286 0.91674 0.88073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 10.24 37.16 0.38 -1.99 16 2 C 0.10 1.69 5.93 -4.04 -0.02 1.66 16 3 N -0.59 -12.95 2.46 -175.06 -0.43 -13.38 16 4 C 0.25 6.57 5.16 -5.20 -0.03 6.54 16 5 C -0.53 -15.13 9.39 -34.44 -0.32 -15.45 16 6 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 9 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.51 11.33 7.75 -10.99 -0.09 11.25 16 14 O -0.52 -13.95 16.08 -14.11 -0.23 -14.17 16 15 C 0.05 0.93 4.51 36.01 0.16 1.09 16 16 O -0.32 -6.16 9.66 -47.41 -0.46 -6.61 16 17 C 0.54 9.21 7.95 34.33 0.27 9.48 16 18 O -0.53 -9.09 14.67 -19.31 -0.28 -9.38 16 19 C -0.22 -3.29 6.33 -103.01 -0.65 -3.94 16 20 C -0.13 -1.82 10.89 -37.49 -0.41 -2.23 16 21 C 0.00 -0.01 6.84 -81.89 -0.56 -0.57 16 22 C -0.08 -0.58 10.05 36.01 0.36 -0.21 16 23 N -0.43 -4.10 2.68 -107.69 -0.29 -4.39 16 24 C 0.09 0.50 6.08 -4.04 -0.02 0.47 16 25 C -0.17 -0.76 10.24 37.15 0.38 -0.38 16 26 C 0.11 1.32 6.93 -81.52 -0.56 0.76 16 27 C -0.10 -0.86 9.28 36.00 0.33 -0.53 16 28 H 0.05 0.69 7.22 -51.93 -0.37 0.32 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 1.46 8.07 -51.93 -0.42 1.04 16 32 H 0.06 0.91 6.44 -51.93 -0.33 0.58 16 33 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 34 H 0.04 1.33 7.42 -51.93 -0.39 0.95 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.09 1.51 7.40 -51.92 -0.38 1.13 16 37 H 0.09 1.45 7.18 -51.93 -0.37 1.07 16 38 H 0.16 2.17 8.06 -52.49 -0.42 1.75 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.32 6.93 -51.93 -0.36 -0.04 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.09 0.37 7.51 -51.93 -0.39 -0.02 16 43 H 0.09 0.36 6.89 -51.93 -0.36 0.00 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 0.35 8.12 -51.93 -0.42 -0.07 16 46 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 47 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.06 0.41 7.57 -51.93 -0.39 0.02 16 49 H 0.10 1.10 6.51 -51.93 -0.34 0.76 16 LS Contribution 409.20 15.07 6.17 6.17 Total: -1.00 -36.53 409.20 -8.56 -45.09 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -7.88 Total: -1.99 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -0.87 Total: 7.61 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 0.02 Total: -43.87 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.97 Total: -30.16 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.53 -8.56 -45.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060904663.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.402 kcal (2) G-P(sol) polarization free energy of solvation -36.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds