Wall clock time and date at job start Sat Apr 11 2020 04:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47092 * 2 1 4 4 C 1.46500 * 119.99656 * 269.99636 * 3 2 1 5 5 C 1.50694 * 109.47273 * 270.00082 * 4 3 2 6 6 H 1.08003 * 120.00247 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00292 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99534 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00231 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46967 * 89.99820 * 9 7 5 11 11 H 1.48492 * 109.47248 * 210.00276 * 9 7 5 12 12 H 1.48505 * 109.47068 * 330.00224 * 9 7 5 13 13 C 1.34768 * 120.00329 * 89.99693 * 3 2 1 14 14 O 1.21283 * 120.00373 * 180.02562 * 13 3 2 15 15 C 1.50703 * 120.00290 * 359.97438 * 13 3 2 16 16 O 1.45196 * 109.47396 * 179.97438 * 15 13 3 17 17 C 1.34784 * 116.99831 * 180.02562 * 16 15 13 18 18 O 1.21552 * 120.00134 * 359.72899 * 17 16 15 19 19 C 1.47118 * 120.00116 * 180.02562 * 17 16 15 20 20 C 1.46736 * 127.01871 * 0.02562 * 19 17 16 21 21 C 1.34432 * 106.37306 * 179.97438 * 20 19 17 22 22 C 1.50700 * 125.46060 * 180.02562 * 21 20 19 23 23 N 1.36429 * 109.08362 * 0.02562 * 21 20 19 24 24 C 1.46507 * 124.80852 * 179.97438 * 23 21 20 25 25 C 1.52995 * 109.47069 * 89.97322 * 24 23 21 26 26 C 1.34624 * 110.38120 * 359.72103 * 23 21 20 27 27 C 1.50698 * 125.89863 * 180.28790 * 26 23 21 28 28 H 1.08994 * 109.47302 * 300.00265 * 1 2 3 29 29 H 1.09000 * 109.46706 * 60.00567 * 1 2 3 30 30 H 1.09002 * 109.47251 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47302 * 239.99734 * 2 1 3 32 32 H 1.09000 * 109.46706 * 119.99433 * 2 1 3 33 33 H 1.08999 * 109.47428 * 30.00002 * 4 3 2 34 34 H 1.09005 * 109.47258 * 149.99781 * 4 3 2 35 35 H 0.97002 * 119.99436 * 179.97438 * 8 7 5 36 36 H 1.09012 * 109.46606 * 59.99977 * 15 13 3 37 37 H 1.08996 * 109.47079 * 300.00556 * 15 13 3 38 38 H 1.07998 * 126.81810 * 0.03766 * 20 19 17 39 39 H 1.08994 * 109.47233 * 89.98041 * 22 21 20 40 40 H 1.09001 * 109.47240 * 209.97794 * 22 21 20 41 41 H 1.09001 * 109.47281 * 329.97601 * 22 21 20 42 42 H 1.08997 * 109.47131 * 209.97012 * 24 23 21 43 43 H 1.08998 * 109.47148 * 329.97438 * 24 23 21 44 44 H 1.09001 * 109.47328 * 299.99996 * 25 24 23 45 45 H 1.09003 * 109.47480 * 59.99886 * 25 24 23 46 46 H 1.09005 * 109.47261 * 180.02562 * 25 24 23 47 47 H 1.09006 * 109.46942 * 270.21527 * 27 26 23 48 48 H 1.09001 * 109.47399 * 30.20998 * 27 26 23 49 49 H 1.08996 * 109.47538 * 150.21015 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2308 -1.0957 7 6 4.1495 2.3903 -2.8775 8 7 3.3495 3.1263 -3.6176 9 14 5.9139 2.0973 -3.4163 10 1 5.9778 0.8766 -4.2594 11 1 6.3930 3.2650 -4.1987 12 1 6.7738 1.9174 -2.2190 13 6 2.2429 2.0166 1.1671 14 8 2.6468 3.1602 1.1671 15 6 1.9912 1.3065 2.4723 16 8 2.3063 2.1959 3.5758 17 6 2.1347 1.7102 4.8214 18 8 1.7279 0.5760 4.9807 19 6 2.4335 2.5552 5.9881 20 6 2.9222 3.9387 5.9750 21 6 3.0520 4.3069 7.2614 22 6 3.5272 5.6540 7.7415 23 7 2.6848 3.2656 8.0626 24 6 2.6952 3.2933 9.5274 25 6 1.3388 3.7837 10.0378 26 6 2.3063 2.2108 7.3166 27 6 1.8290 0.8819 7.8432 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.5818 1.6876 -2.0284 34 1 2.0955 3.1410 -1.1386 35 1 3.6758 3.5173 -4.4432 36 1 2.6211 0.4187 2.5303 37 1 0.9432 1.0127 2.5298 38 1 3.1343 4.5420 5.1047 39 1 2.6727 6.3207 7.8569 40 1 4.0317 5.5406 8.7010 41 1 4.2209 6.0752 7.0138 42 1 2.8856 2.2900 9.9085 43 1 3.4787 3.9679 9.8725 44 1 1.1483 4.7871 9.6568 45 1 0.5552 3.1092 9.6927 46 1 1.3467 3.8048 11.1276 47 1 2.6816 0.2155 7.9740 48 1 1.3319 1.0283 8.8021 49 1 1.1283 0.4406 7.1344 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060904663.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:08 Heat of formation + Delta-G solvation = -102.432646 kcal Electronic energy + Delta-G solvation = -29058.719392 eV Core-core repulsion = 24985.938277 eV Total energy + Delta-G solvation = -4072.781114 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.56822 -41.38465 -40.37293 -37.47746 -36.94547 -35.07721 -34.93496 -33.68575 -31.76784 -31.02183 -30.27825 -29.99094 -28.40125 -26.25115 -24.95567 -24.60435 -24.10229 -23.02112 -21.45703 -20.32299 -19.54252 -18.74745 -18.61789 -17.87815 -17.67639 -17.51307 -17.00672 -16.60271 -16.36381 -16.11519 -15.82860 -15.32336 -14.82217 -14.69888 -14.51136 -14.44856 -14.19931 -14.05459 -13.88587 -13.78325 -13.68862 -13.57958 -13.52986 -13.28312 -13.18706 -13.07715 -12.92900 -12.68326 -12.55268 -12.50923 -12.32368 -12.21903 -12.09143 -12.03442 -11.76873 -11.70476 -11.53296 -10.72692 -10.64467 -9.72122 -9.54835 -9.04614 -8.23440 -6.37874 0.37816 1.27815 1.29938 1.36309 1.39630 1.49937 1.61688 1.86622 2.19633 2.35627 2.51975 3.06331 3.45106 3.67708 3.73933 3.77333 3.87726 3.98865 4.03036 4.10020 4.15613 4.21622 4.34938 4.38134 4.47902 4.55228 4.59012 4.67651 4.76318 4.79845 4.86356 4.87547 4.92580 4.94222 5.02335 5.02869 5.11031 5.12794 5.19678 5.26393 5.35811 5.40965 5.54373 5.69381 5.79973 6.03734 6.04145 6.27403 6.58004 6.70943 6.79792 7.21174 7.36464 8.84130 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016099 B = 0.002410 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.769995 B =11614.264230 C =12662.714997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.545 4.545 6 H 0.053 0.947 7 C 0.008 3.992 8 N -0.927 5.927 9 Si 0.969 3.031 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.275 1.275 13 C 0.500 3.500 14 O -0.578 6.578 15 C 0.064 3.936 16 O -0.349 6.349 17 C 0.537 3.463 18 O -0.537 6.537 19 C -0.269 4.269 20 C -0.176 4.176 21 C 0.016 3.984 22 C -0.081 4.081 23 N -0.425 5.425 24 C 0.084 3.916 25 C -0.167 4.167 26 C 0.126 3.874 27 C -0.092 4.092 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.031 0.969 34 H -0.002 1.002 35 H 0.268 0.732 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.134 0.866 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.112 0.888 43 H 0.115 0.885 44 H 0.056 0.944 45 H 0.054 0.946 46 H 0.101 0.899 47 H 0.090 0.910 48 H 0.098 0.902 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.350 -3.826 31.177 31.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.583 4.583 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.793 3.207 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.200 1.200 13 C 0.287 3.713 14 O -0.458 6.458 15 C -0.012 4.012 16 O -0.265 6.265 17 C 0.386 3.614 18 O -0.430 6.430 19 C -0.277 4.277 20 C -0.199 4.199 21 C -0.091 4.091 22 C -0.138 4.138 23 N -0.101 5.101 24 C -0.035 4.035 25 C -0.225 4.225 26 C 0.006 3.994 27 C -0.149 4.149 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.118 0.882 31 H 0.102 0.898 32 H 0.114 0.886 33 H 0.049 0.951 34 H 0.016 0.984 35 H 0.077 0.923 36 H 0.132 0.868 37 H 0.137 0.863 38 H 0.152 0.848 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.100 0.900 42 H 0.130 0.870 43 H 0.133 0.867 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.120 0.880 47 H 0.108 0.892 48 H 0.117 0.883 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.259 -3.408 31.370 31.841 hybrid contribution 0.721 0.158 -1.399 1.582 sum -3.538 -3.251 29.971 30.354 Atomic orbital electron populations 1.22173 0.94291 1.03825 1.01784 1.21869 0.95605 0.80947 1.04384 1.48203 1.63642 1.15286 1.05604 1.18794 0.95660 0.91616 0.79714 1.21691 0.97779 1.32230 1.06626 0.92885 1.25866 1.02504 0.94395 0.96382 1.70051 1.37783 1.34035 1.14792 0.85395 0.78836 0.78296 0.78157 1.18601 1.20514 1.19975 1.20540 0.78285 0.86628 0.85848 1.90669 1.47138 1.20227 1.87769 1.22768 1.04442 0.92029 0.81997 1.86643 1.79529 1.45304 1.15040 1.20528 0.73480 0.85067 0.82285 1.90733 1.45606 1.19918 1.86700 1.19480 1.21323 0.96974 0.89920 1.21968 1.06717 0.94359 0.96865 1.20625 1.06658 0.92713 0.89148 1.20448 1.01920 0.88726 1.02697 1.43964 1.48550 1.09590 1.07957 1.22355 1.01057 1.05987 0.74143 1.22165 0.95283 1.01726 1.03330 1.20788 0.98398 0.91737 0.88453 1.20652 1.02549 0.89193 1.02505 0.92609 0.93613 0.88248 0.89830 0.88555 0.95103 0.98358 0.92326 0.86750 0.86274 0.84810 0.89839 0.89232 0.89987 0.86988 0.86660 0.92468 0.92649 0.87988 0.89151 0.88340 0.89931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.30 10.24 71.98 0.74 -3.56 16 2 C 0.09 3.02 5.93 86.38 0.51 3.54 16 3 N -0.59 -26.78 2.46 -826.17 -2.03 -28.81 16 4 C 0.26 14.68 5.16 85.63 0.44 15.12 16 5 C -0.54 -32.35 9.39 25.60 0.24 -32.11 16 6 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 7 C 0.01 0.45 5.46 84.66 0.46 0.91 16 8 N -0.93 -57.10 13.29 21.45 0.28 -56.81 16 9 Si 0.97 46.03 29.54 68.60 2.03 48.05 16 10 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 13 C 0.50 23.28 7.75 87.66 0.68 23.96 16 14 O -0.58 -33.27 16.08 15.76 0.25 -33.02 16 15 C 0.06 2.33 4.51 71.24 0.32 2.65 16 16 O -0.35 -13.94 9.66 -50.57 -0.49 -14.43 16 17 C 0.54 18.87 7.95 70.15 0.56 19.42 16 18 O -0.54 -18.43 14.67 19.67 0.29 -18.14 16 19 C -0.27 -8.22 6.33 -18.82 -0.12 -8.34 16 20 C -0.18 -5.10 10.89 23.62 0.26 -4.84 16 21 C 0.02 0.33 6.84 40.97 0.28 0.61 16 22 C -0.08 -0.98 10.05 71.24 0.72 -0.27 16 23 N -0.42 -7.17 2.68 -494.63 -1.33 -8.49 16 24 C 0.08 0.57 6.08 86.38 0.53 1.09 16 25 C -0.17 -0.91 10.24 71.98 0.74 -0.18 16 26 C 0.13 2.80 6.93 42.04 0.29 3.09 16 27 C -0.09 -1.48 9.28 71.24 0.66 -0.81 16 28 H 0.05 1.42 7.22 -2.39 -0.02 1.41 16 29 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.08 2.76 8.07 -2.39 -0.02 2.74 16 32 H 0.10 2.51 6.44 -2.39 -0.02 2.49 16 33 H 0.03 1.72 8.07 -2.39 -0.02 1.70 16 34 H 0.00 -0.11 7.42 -2.38 -0.02 -0.13 16 35 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 36 H 0.11 3.61 7.40 -2.38 -0.02 3.59 16 37 H 0.12 3.62 7.18 -2.39 -0.02 3.61 16 38 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 39 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.09 0.61 6.93 -2.39 -0.02 0.60 16 41 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.11 0.38 7.51 -2.39 -0.02 0.36 16 43 H 0.12 0.35 6.89 -2.39 -0.02 0.33 16 44 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.05 0.43 8.12 -2.39 -0.02 0.41 16 46 H 0.10 0.07 8.14 -2.38 -0.02 0.05 16 47 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 48 H 0.10 0.90 7.57 -2.39 -0.02 0.88 16 49 H 0.08 1.70 6.51 -2.39 -0.02 1.68 16 Total: -1.00 -85.52 409.20 7.25 -78.27 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.94 Total: 13.10 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: 7.30 Total: 20.28 kcal Atomic # 7 Polarization: -91.05 SS G_CDS: -3.07 Total: -94.12 kcal Atomic # 8 Polarization: -65.64 SS G_CDS: 0.05 Total: -65.59 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal Total: -85.52 7.25 -78.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060904663.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.163 kcal (2) G-P(sol) polarization free energy of solvation -85.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds