Wall clock time and date at job start Sat Apr 11 2020 04:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46493 * 109.47121 * 2 1 4 4 C 1.46495 * 120.00364 * 269.99735 * 3 2 1 5 5 C 1.50701 * 109.47160 * 270.00428 * 4 3 2 6 6 H 1.07995 * 120.00113 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99770 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99960 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00111 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.46933 * 90.00545 * 9 7 5 11 11 H 1.48507 * 109.46976 * 210.00342 * 9 7 5 12 12 H 1.48492 * 109.47184 * 330.00354 * 9 7 5 13 13 C 1.34786 * 120.00153 * 89.99752 * 3 2 1 14 14 O 1.21277 * 120.00075 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99526 * 0.02562 * 13 3 2 16 16 N 1.46496 * 109.47040 * 179.97438 * 15 13 3 17 17 C 1.46503 * 119.99959 * 270.00140 * 16 15 13 18 18 C 1.39920 * 120.00376 * 89.99771 * 16 15 13 19 19 C 1.38870 * 119.99796 * 0.02562 * 18 16 15 20 20 C 1.38211 * 120.06698 * 179.72224 * 19 18 16 21 21 C 1.38533 * 120.07396 * 0.51316 * 20 19 18 22 22 O 1.36095 * 120.00222 * 179.76644 * 21 20 19 23 23 C 1.42901 * 116.99713 * 359.72325 * 22 21 20 24 24 C 1.39140 * 120.00035 * 359.48940 * 21 20 19 25 25 O 1.35990 * 120.03759 * 180.23218 * 24 21 20 26 26 C 1.42893 * 117.00160 * 180.02562 * 25 24 21 27 27 C 1.38517 * 119.92791 * 0.25558 * 24 21 20 28 28 H 1.09001 * 109.46947 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47448 * 299.99856 * 1 2 3 30 30 H 1.09001 * 109.47005 * 59.99842 * 1 2 3 31 31 H 1.08996 * 109.46907 * 239.99618 * 2 1 3 32 32 H 1.09001 * 109.47005 * 120.00158 * 2 1 3 33 33 H 1.09000 * 109.47091 * 30.00005 * 4 3 2 34 34 H 1.08995 * 109.47469 * 149.99616 * 4 3 2 35 35 H 0.96994 * 120.00651 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.47221 * 59.99689 * 15 13 3 37 37 H 1.09004 * 109.47162 * 299.99835 * 15 13 3 38 38 H 1.09000 * 109.46907 * 269.99536 * 17 16 15 39 39 H 1.09000 * 109.47162 * 29.99252 * 17 16 15 40 40 H 1.09000 * 109.47454 * 150.00078 * 17 16 15 41 41 H 1.07998 * 119.96767 * 0.02562 * 19 18 16 42 42 H 1.08000 * 119.96613 * 180.27783 * 20 19 18 43 43 H 1.08998 * 109.47043 * 59.99755 * 23 22 21 44 44 H 1.08996 * 109.46732 * 180.02562 * 23 22 21 45 45 H 1.08999 * 109.47144 * 300.00156 * 23 22 21 46 46 H 1.08999 * 109.47069 * 299.99970 * 26 25 24 47 47 H 1.08995 * 109.47276 * 59.99815 * 26 25 24 48 48 H 1.08998 * 109.47180 * 180.02562 * 26 25 24 49 49 H 1.08006 * 120.03398 * 179.97438 * 27 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2626 2.0718 -1.2686 5 6 3.6859 1.8349 -1.7037 6 1 4.3429 1.2307 -1.0957 7 6 4.1495 2.3905 -2.8773 8 7 5.3914 2.1834 -3.2572 9 14 3.0132 3.4361 -3.9285 10 1 3.1160 4.8561 -3.5066 11 1 3.4069 3.3138 -5.3553 12 1 1.6137 2.9695 -3.7595 13 6 2.2429 2.0166 1.1673 14 8 2.6476 3.1598 1.1672 15 6 1.9922 1.3059 2.4723 16 7 2.3100 2.2033 3.5859 17 6 3.6651 2.2290 4.1421 18 6 1.3193 3.0358 4.1181 19 6 0.0348 3.0110 3.5912 20 6 -0.9463 3.8286 4.1196 21 6 -0.6477 4.6822 5.1691 22 8 -1.6137 5.4900 5.6852 23 6 -2.9114 5.4100 5.0922 24 6 0.6384 4.7094 5.6993 25 8 0.9312 5.5437 6.7326 26 6 2.2719 5.5193 7.2263 27 6 1.6204 3.8863 5.1732 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.5818 1.6877 -2.0283 34 1 2.0956 3.1410 -1.1384 35 1 5.7176 2.5738 -4.0831 36 1 2.6227 0.4186 2.5299 37 1 0.9444 1.0114 2.5302 38 1 3.7410 1.4989 4.9479 39 1 4.3835 1.9832 3.3602 40 1 3.8789 3.2241 4.5322 41 1 -0.1992 2.3487 2.7708 42 1 -1.9460 3.8048 3.7115 43 1 -3.2945 4.3945 5.1922 44 1 -3.5844 6.1039 5.5958 45 1 -2.8449 5.6708 4.0360 46 1 2.5097 4.5170 7.5827 47 1 2.9590 5.7926 6.4255 48 1 2.3697 6.2292 8.0476 49 1 2.6194 3.9063 5.5832 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063617536.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:12 Heat of formation + Delta-G solvation = -55.374836 kcal Electronic energy + Delta-G solvation = -29998.778073 eV Core-core repulsion = 25928.037538 eV Total energy + Delta-G solvation = -4070.740535 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.57801 -39.40914 -38.36678 -37.70605 -35.48445 -34.83928 -32.75846 -30.75519 -30.35043 -29.86337 -28.80742 -27.76473 -27.26019 -26.84465 -24.57525 -23.03001 -22.54642 -21.83236 -20.87027 -18.74917 -18.40812 -17.15385 -16.97211 -16.78707 -16.66413 -16.17439 -16.02119 -15.49191 -15.23278 -14.77571 -14.61576 -14.46908 -14.43001 -14.20106 -13.62768 -13.52067 -13.06443 -12.86605 -12.77250 -12.61743 -12.56375 -12.30430 -12.16776 -12.01762 -11.79209 -11.72404 -11.44462 -11.38423 -11.25329 -11.19300 -11.00421 -10.88520 -10.73346 -10.52089 -10.17659 -9.60056 -9.49568 -8.91598 -8.61198 -8.33526 -7.75011 -6.90999 -6.11374 -4.10010 1.38755 1.69821 3.02344 3.27100 3.27898 3.29141 3.33389 3.35752 3.40874 3.80084 3.93098 4.37573 4.74801 4.92853 4.95003 4.97115 5.04132 5.08932 5.11572 5.12978 5.17204 5.23018 5.30178 5.33807 5.36340 5.41163 5.43184 5.46409 5.49533 5.54048 5.60668 5.65327 5.84816 5.89032 5.93768 6.10184 6.20169 6.34553 6.39434 6.57032 6.67887 6.92761 7.06574 7.24084 7.34548 7.41667 7.59273 7.71094 8.22703 8.44412 8.89994 8.96670 9.49306 11.02035 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013225 B = 0.003014 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.708465 B = 9287.292481 C = 9571.428595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 N -0.594 5.594 4 C 0.217 3.783 5 C -0.528 4.528 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.483 3.517 14 O -0.525 6.525 15 C 0.105 3.895 16 N -0.608 5.608 17 C 0.098 3.902 18 C 0.238 3.762 19 C -0.192 4.192 20 C -0.120 4.120 21 C 0.033 3.967 22 O -0.313 6.313 23 C 0.030 3.970 24 C 0.145 3.855 25 O -0.307 6.307 26 C 0.027 3.973 27 C -0.249 4.249 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.029 0.971 34 H 0.035 0.965 35 H 0.265 0.735 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.123 0.877 42 H 0.132 0.868 43 H 0.050 0.950 44 H 0.094 0.906 45 H 0.051 0.949 46 H 0.053 0.947 47 H 0.055 0.945 48 H 0.097 0.903 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.804 -1.838 18.769 22.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.019 4.019 3 N -0.327 5.327 4 C 0.097 3.903 5 C -0.566 4.566 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.268 3.732 14 O -0.400 6.400 15 C -0.022 4.022 16 N -0.318 5.318 17 C -0.045 4.045 18 C 0.136 3.864 19 C -0.214 4.214 20 C -0.139 4.139 21 C -0.012 4.012 22 O -0.227 6.227 23 C -0.066 4.066 24 C 0.099 3.901 25 O -0.220 6.220 26 C -0.068 4.068 27 C -0.272 4.272 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.141 0.859 42 H 0.149 0.851 43 H 0.068 0.932 44 H 0.112 0.888 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.073 0.927 48 H 0.115 0.885 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.402 -1.014 18.809 22.552 hybrid contribution -0.215 0.240 -1.157 1.201 sum -12.616 -0.774 17.652 21.711 Atomic orbital electron populations 1.22248 0.96745 1.01671 1.02229 1.21456 0.93423 0.83906 1.03132 1.48002 1.64350 1.13321 1.07028 1.19620 0.97235 0.93350 0.80138 1.21317 0.95348 1.32857 1.07098 0.90860 1.24856 0.94986 0.95787 0.97374 1.69888 1.15151 1.45018 1.23597 0.86856 0.81472 0.81640 0.79760 1.19936 1.21047 1.19075 1.21068 0.79025 0.87588 0.85547 1.90688 1.44584 1.17872 1.86904 1.21439 1.03039 0.92652 0.85108 1.45968 1.08879 1.42461 1.34444 1.21616 0.82670 1.01593 0.98602 1.17382 0.88240 0.89471 0.91331 1.20347 0.91863 1.05102 1.04100 1.20733 0.99924 0.96938 0.96321 1.17902 0.87400 0.97799 0.98141 1.86126 1.18619 1.60018 1.57984 1.22952 0.82955 1.01953 0.98738 1.17881 0.90921 0.91929 0.89397 1.86150 1.30445 1.58685 1.46740 1.23033 0.82124 1.02325 0.99351 1.20457 0.99590 1.03641 1.03496 0.91849 0.93089 0.92134 0.89601 0.91517 0.95334 0.94745 0.92558 0.88168 0.88300 0.93376 0.91091 0.91586 0.85939 0.85054 0.93171 0.88772 0.93061 0.92825 0.92658 0.88473 0.84672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 10.24 37.16 0.38 -1.60 16 2 C 0.10 1.51 5.93 -4.04 -0.02 1.49 16 3 N -0.59 -11.70 2.46 -175.07 -0.43 -12.13 16 4 C 0.22 5.25 4.23 -5.20 -0.02 5.23 16 5 C -0.53 -15.01 9.94 -34.44 -0.34 -15.36 16 6 H 0.07 2.28 8.06 -52.49 -0.42 1.85 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 9 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 10 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 13 C 0.48 9.49 7.74 -10.98 -0.09 9.41 16 14 O -0.52 -12.90 16.01 5.56 0.09 -12.81 16 15 C 0.10 1.48 4.19 -5.20 -0.02 1.46 16 16 N -0.61 -8.79 2.50 -180.96 -0.45 -9.25 16 17 C 0.10 1.22 10.19 59.85 0.61 1.83 16 18 C 0.24 3.55 6.55 -83.72 -0.55 3.00 16 19 C -0.19 -2.74 9.21 -39.36 -0.36 -3.10 16 20 C -0.12 -1.59 9.03 -39.48 -0.36 -1.95 16 21 C 0.03 0.49 6.70 -39.14 -0.26 0.23 16 22 O -0.31 -4.32 10.28 -34.65 -0.36 -4.68 16 23 C 0.03 0.27 9.81 101.05 0.99 1.26 16 24 C 0.14 2.13 6.70 -39.14 -0.26 1.87 16 25 O -0.31 -4.23 10.28 -34.32 -0.35 -4.58 16 26 C 0.03 0.25 9.81 101.05 0.99 1.24 16 27 C -0.25 -3.48 8.19 -39.26 -0.32 -3.80 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.55 7.22 -51.93 -0.38 0.17 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 32 H 0.07 0.78 6.44 -51.93 -0.33 0.44 16 33 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 34 H 0.03 0.91 6.85 -51.93 -0.36 0.55 16 35 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 36 H 0.10 1.19 7.33 -51.93 -0.38 0.81 16 37 H 0.10 1.17 5.24 -51.93 -0.27 0.89 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.96 8.07 -51.93 -0.42 0.54 16 40 H 0.07 0.78 6.20 -51.93 -0.32 0.46 16 41 H 0.12 1.64 6.13 -52.49 -0.32 1.32 16 42 H 0.13 1.39 6.29 -52.49 -0.33 1.06 16 43 H 0.05 0.39 7.65 -51.93 -0.40 -0.01 16 44 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.05 0.44 7.67 -51.93 -0.40 0.04 16 46 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 47 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 48 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.14 1.61 4.37 -52.48 -0.23 1.38 16 LS Contribution 394.71 15.07 5.95 5.95 Total: -1.00 -37.15 394.71 -6.61 -43.75 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -7.42 Total: 0.40 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 0.27 Total: 3.20 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: -0.11 Total: -48.22 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.62 Total: -22.07 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.15 -6.61 -43.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063617536.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.622 kcal (2) G-P(sol) polarization free energy of solvation -37.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds