Wall clock time and date at job start Sat Apr 11 2020 04:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46493 * 109.47121 * 2 1 4 4 C 1.46495 * 120.00364 * 269.99735 * 3 2 1 5 5 C 1.50701 * 109.47160 * 270.00428 * 4 3 2 6 6 H 1.07995 * 120.00113 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99770 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99960 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00111 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.46933 * 90.00545 * 9 7 5 11 11 H 1.48507 * 109.46976 * 210.00342 * 9 7 5 12 12 H 1.48492 * 109.47184 * 330.00354 * 9 7 5 13 13 C 1.34786 * 120.00153 * 89.99752 * 3 2 1 14 14 O 1.21277 * 120.00075 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99526 * 0.02562 * 13 3 2 16 16 N 1.46496 * 109.47040 * 179.97438 * 15 13 3 17 17 C 1.46503 * 119.99959 * 270.00140 * 16 15 13 18 18 C 1.39920 * 120.00376 * 89.99771 * 16 15 13 19 19 C 1.38870 * 119.99796 * 0.02562 * 18 16 15 20 20 C 1.38211 * 120.06698 * 179.72224 * 19 18 16 21 21 C 1.38533 * 120.07396 * 0.51316 * 20 19 18 22 22 O 1.36095 * 120.00222 * 179.76644 * 21 20 19 23 23 C 1.42901 * 116.99713 * 359.72325 * 22 21 20 24 24 C 1.39140 * 120.00035 * 359.48940 * 21 20 19 25 25 O 1.35990 * 120.03759 * 180.23218 * 24 21 20 26 26 C 1.42893 * 117.00160 * 180.02562 * 25 24 21 27 27 C 1.38517 * 119.92791 * 0.25558 * 24 21 20 28 28 H 1.09001 * 109.46947 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47448 * 299.99856 * 1 2 3 30 30 H 1.09001 * 109.47005 * 59.99842 * 1 2 3 31 31 H 1.08996 * 109.46907 * 239.99618 * 2 1 3 32 32 H 1.09001 * 109.47005 * 120.00158 * 2 1 3 33 33 H 1.09000 * 109.47091 * 30.00005 * 4 3 2 34 34 H 1.08995 * 109.47469 * 149.99616 * 4 3 2 35 35 H 0.96994 * 120.00651 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.47221 * 59.99689 * 15 13 3 37 37 H 1.09004 * 109.47162 * 299.99835 * 15 13 3 38 38 H 1.09000 * 109.46907 * 269.99536 * 17 16 15 39 39 H 1.09000 * 109.47162 * 29.99252 * 17 16 15 40 40 H 1.09000 * 109.47454 * 150.00078 * 17 16 15 41 41 H 1.07998 * 119.96767 * 0.02562 * 19 18 16 42 42 H 1.08000 * 119.96613 * 180.27783 * 20 19 18 43 43 H 1.08998 * 109.47043 * 59.99755 * 23 22 21 44 44 H 1.08996 * 109.46732 * 180.02562 * 23 22 21 45 45 H 1.08999 * 109.47144 * 300.00156 * 23 22 21 46 46 H 1.08999 * 109.47069 * 299.99970 * 26 25 24 47 47 H 1.08995 * 109.47276 * 59.99815 * 26 25 24 48 48 H 1.08998 * 109.47180 * 180.02562 * 26 25 24 49 49 H 1.08006 * 120.03398 * 179.97438 * 27 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2626 2.0718 -1.2686 5 6 3.6859 1.8349 -1.7037 6 1 4.3429 1.2307 -1.0957 7 6 4.1495 2.3905 -2.8773 8 7 5.3914 2.1834 -3.2572 9 14 3.0132 3.4361 -3.9285 10 1 3.1160 4.8561 -3.5066 11 1 3.4069 3.3138 -5.3553 12 1 1.6137 2.9695 -3.7595 13 6 2.2429 2.0166 1.1673 14 8 2.6476 3.1598 1.1672 15 6 1.9922 1.3059 2.4723 16 7 2.3100 2.2033 3.5859 17 6 3.6651 2.2290 4.1421 18 6 1.3193 3.0358 4.1181 19 6 0.0348 3.0110 3.5912 20 6 -0.9463 3.8286 4.1196 21 6 -0.6477 4.6822 5.1691 22 8 -1.6137 5.4900 5.6852 23 6 -2.9114 5.4100 5.0922 24 6 0.6384 4.7094 5.6993 25 8 0.9312 5.5437 6.7326 26 6 2.2719 5.5193 7.2263 27 6 1.6204 3.8863 5.1732 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.5818 1.6877 -2.0283 34 1 2.0956 3.1410 -1.1384 35 1 5.7176 2.5738 -4.0831 36 1 2.6227 0.4186 2.5299 37 1 0.9444 1.0114 2.5302 38 1 3.7410 1.4989 4.9479 39 1 4.3835 1.9832 3.3602 40 1 3.8789 3.2241 4.5322 41 1 -0.1992 2.3487 2.7708 42 1 -1.9460 3.8048 3.7115 43 1 -3.2945 4.3945 5.1922 44 1 -3.5844 6.1039 5.5958 45 1 -2.8449 5.6708 4.0360 46 1 2.5097 4.5170 7.5827 47 1 2.9590 5.7926 6.4255 48 1 2.3697 6.2292 8.0476 49 1 2.6194 3.9063 5.5832 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063617536.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:11 Heat of formation + Delta-G solvation = -80.349245 kcal Electronic energy + Delta-G solvation = -29999.861044 eV Core-core repulsion = 25928.037538 eV Total energy + Delta-G solvation = -4071.823506 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.60282 -40.79980 -39.29993 -38.82681 -36.97322 -35.95078 -34.86156 -32.10787 -31.56172 -30.86989 -30.04525 -29.03769 -28.04796 -28.00638 -25.70542 -24.44492 -24.01407 -22.90121 -21.99378 -19.99547 -19.59062 -19.11731 -18.18136 -18.07241 -17.78189 -17.31215 -16.96518 -16.92251 -16.22588 -16.06543 -15.91217 -15.67348 -15.44435 -15.37471 -15.08395 -14.68781 -14.53685 -14.22741 -13.81237 -13.73371 -13.70269 -13.48526 -13.44585 -13.23352 -13.07490 -12.93852 -12.67919 -12.56937 -12.38796 -12.24876 -12.17144 -12.04983 -12.01130 -11.87152 -11.82089 -11.75576 -10.88501 -10.84718 -10.13592 -9.40166 -9.37562 -8.36247 -7.96617 -6.40362 0.36461 0.63490 1.29369 1.33607 1.41543 1.80952 1.94889 2.28266 2.38564 2.45572 2.55605 2.83633 2.98514 3.70636 3.79237 3.94470 4.04421 4.14498 4.21997 4.26095 4.32876 4.37540 4.39645 4.44222 4.47101 4.47298 4.52406 4.58167 4.65205 4.69457 4.72544 4.78587 4.79989 4.86055 4.90151 4.93875 5.02253 5.03979 5.18457 5.36459 5.41399 5.46846 5.57375 5.66639 6.12926 6.20057 6.26302 6.38588 6.60947 6.74074 6.76035 7.20861 7.46045 8.80671 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013225 B = 0.003014 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.708465 B = 9287.292481 C = 9571.428595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.096 3.904 3 N -0.600 5.600 4 C 0.227 3.773 5 C -0.532 4.532 6 H 0.031 0.969 7 C 0.012 3.988 8 N -0.945 5.945 9 Si 0.944 3.056 10 H -0.280 1.280 11 H -0.274 1.274 12 H -0.239 1.239 13 C 0.475 3.525 14 O -0.586 6.586 15 C 0.116 3.884 16 N -0.614 5.614 17 C 0.095 3.905 18 C 0.219 3.781 19 C -0.203 4.203 20 C -0.119 4.119 21 C 0.018 3.982 22 O -0.335 6.335 23 C 0.020 3.980 24 C 0.128 3.872 25 O -0.326 6.326 26 C 0.019 3.981 27 C -0.252 4.252 28 H 0.095 0.905 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.046 0.954 34 H 0.011 0.989 35 H 0.268 0.732 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.080 0.920 39 H 0.053 0.947 40 H 0.065 0.935 41 H 0.131 0.869 42 H 0.156 0.844 43 H 0.065 0.935 44 H 0.115 0.885 45 H 0.055 0.945 46 H 0.067 0.933 47 H 0.054 0.946 48 H 0.120 0.880 49 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.361 -2.814 19.662 25.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.026 4.026 3 N -0.332 5.332 4 C 0.105 3.895 5 C -0.571 4.571 6 H 0.049 0.951 7 C -0.186 4.186 8 N -0.585 5.585 9 Si 0.767 3.233 10 H -0.206 1.206 11 H -0.199 1.199 12 H -0.162 1.162 13 C 0.262 3.738 14 O -0.466 6.466 15 C -0.011 4.011 16 N -0.325 5.325 17 C -0.047 4.047 18 C 0.117 3.883 19 C -0.225 4.225 20 C -0.138 4.138 21 C -0.028 4.028 22 O -0.250 6.250 23 C -0.074 4.074 24 C 0.082 3.918 25 O -0.240 6.240 26 C -0.075 4.075 27 C -0.275 4.275 28 H 0.114 0.886 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.118 0.882 33 H 0.064 0.936 34 H 0.029 0.971 35 H 0.077 0.923 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.149 0.851 42 H 0.174 0.826 43 H 0.084 0.916 44 H 0.133 0.867 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.072 0.928 48 H 0.138 0.862 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -14.992 -2.044 19.731 24.864 hybrid contribution 0.636 0.546 -1.344 1.584 sum -14.356 -1.498 18.387 23.376 Atomic orbital electron populations 1.22180 0.93988 1.03759 1.02080 1.21817 0.95631 0.80977 1.04186 1.48133 1.64226 1.15223 1.05655 1.19224 0.94705 0.92730 0.82883 1.21564 0.97076 1.31858 1.06558 0.95113 1.25813 0.96630 0.97188 0.99005 1.70035 1.17338 1.46638 1.24516 0.85772 0.80617 0.78940 0.77974 1.20609 1.19857 1.16178 1.22200 0.77361 0.87107 0.87139 1.90651 1.47298 1.20707 1.87898 1.21511 1.05430 0.92441 0.81704 1.46130 1.09390 1.42650 1.34285 1.21726 0.81579 1.02596 0.98840 1.17629 0.88753 0.90007 0.91899 1.20558 0.91962 1.05622 1.04403 1.20989 1.00916 0.96110 0.95749 1.18202 0.87816 0.98177 0.98556 1.86095 1.20039 1.60080 1.58781 1.23246 0.81406 1.03617 0.99138 1.18163 0.91435 0.92302 0.89888 1.86120 1.32665 1.58654 1.46565 1.23305 0.80347 1.03934 0.99922 1.20617 1.00188 1.03296 1.03406 0.88583 0.91849 0.93698 0.90973 0.88169 0.93592 0.97094 0.92304 0.85427 0.85283 0.90153 0.92862 0.91662 0.85090 0.82636 0.91635 0.86720 0.92654 0.91471 0.92759 0.86161 0.83351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 10.24 71.98 0.74 -2.46 16 2 C 0.10 2.55 5.93 86.38 0.51 3.07 16 3 N -0.60 -23.29 2.46 -826.18 -2.03 -25.32 16 4 C 0.23 11.03 4.23 85.63 0.36 11.39 16 5 C -0.53 -31.20 9.94 25.60 0.25 -30.94 16 6 H 0.03 2.00 8.06 -2.91 -0.02 1.98 16 7 C 0.01 0.69 5.47 84.66 0.46 1.15 16 8 N -0.94 -59.87 13.96 21.45 0.30 -59.57 16 9 Si 0.94 44.96 27.47 68.60 1.88 46.85 16 10 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.24 -10.21 6.54 99.48 0.65 -9.56 16 13 C 0.47 18.47 7.74 87.66 0.68 19.15 16 14 O -0.59 -29.51 16.01 -3.02 -0.05 -29.56 16 15 C 0.12 3.02 4.19 85.63 0.36 3.38 16 16 N -0.61 -16.94 2.50 -726.43 -1.82 -18.76 16 17 C 0.10 2.26 10.19 127.77 1.30 3.57 16 18 C 0.22 6.29 6.55 38.14 0.25 6.54 16 19 C -0.20 -5.49 9.21 22.41 0.21 -5.28 16 20 C -0.12 -2.97 9.03 22.33 0.20 -2.77 16 21 C 0.02 0.52 6.70 22.56 0.15 0.68 16 22 O -0.33 -8.96 10.28 -80.66 -0.83 -9.79 16 23 C 0.02 0.34 9.81 113.37 1.11 1.45 16 24 C 0.13 3.73 6.70 22.55 0.15 3.88 16 25 O -0.33 -8.87 10.28 -79.48 -0.82 -9.68 16 26 C 0.02 0.34 9.81 113.37 1.11 1.45 16 27 C -0.25 -6.90 8.19 22.48 0.18 -6.71 16 28 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.06 1.11 7.22 -2.39 -0.02 1.09 16 30 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 2.12 8.07 -2.39 -0.02 2.10 16 32 H 0.10 1.98 6.44 -2.39 -0.02 1.97 16 33 H 0.05 2.06 7.13 -2.39 -0.02 2.05 16 34 H 0.01 0.59 6.85 -2.39 -0.02 0.57 16 35 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 36 H 0.13 2.63 7.33 -2.39 -0.02 2.61 16 37 H 0.13 2.58 5.24 -2.39 -0.01 2.56 16 38 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.05 1.44 8.07 -2.39 -0.02 1.42 16 40 H 0.06 1.53 6.20 -2.39 -0.01 1.51 16 41 H 0.13 3.19 6.13 -2.91 -0.02 3.17 16 42 H 0.16 2.95 6.29 -2.91 -0.02 2.93 16 43 H 0.07 0.87 7.65 -2.39 -0.02 0.85 16 44 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.05 0.86 7.67 -2.39 -0.02 0.84 16 46 H 0.07 0.98 7.66 -2.39 -0.02 0.97 16 47 H 0.05 0.95 7.66 -2.39 -0.02 0.94 16 48 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.15 3.44 4.37 -2.91 -0.01 3.43 16 Total: -1.00 -85.55 394.71 5.58 -79.97 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 0.90 Total: 18.32 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 8.04 Total: 7.54 kcal Atomic # 7 Polarization: -100.10 SS G_CDS: -3.55 Total: -103.64 kcal Atomic # 8 Polarization: -47.34 SS G_CDS: -1.69 Total: -49.03 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.85 kcal Total: -85.55 5.58 -79.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063617536.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.380 kcal (2) G-P(sol) polarization free energy of solvation -85.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds