Wall clock time and date at job start Sat Apr 11 2020 04:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47171 * 2 1 4 4 C 1.34779 * 120.00072 * 180.02562 * 3 2 1 5 5 O 1.21277 * 119.99863 * 359.97438 * 4 3 2 6 6 C 1.50704 * 120.00028 * 179.97438 * 4 3 2 7 7 N 1.46898 * 109.46998 * 179.97438 * 6 4 3 8 8 C 1.46898 * 111.00059 * 179.97438 * 7 6 4 9 9 C 1.50700 * 109.47526 * 180.02562 * 8 7 6 10 10 C 1.38246 * 119.92759 * 90.00118 * 9 8 7 11 11 C 1.38242 * 120.14884 * 180.02562 * 10 9 8 12 12 C 1.38565 * 119.99815 * 359.97438 * 11 10 9 13 13 O 1.35996 * 120.07637 * 179.97438 * 12 11 10 14 14 C 1.42898 * 116.99713 * 0.02562 * 13 12 11 15 15 C 1.39160 * 119.85398 * 0.02562 * 12 11 10 16 16 O 1.35995 * 120.07175 * 180.02562 * 15 12 11 17 17 C 1.42903 * 116.99587 * 180.02562 * 16 15 12 18 18 C 1.53000 * 109.46726 * 180.02562 * 17 16 15 19 19 C 1.50706 * 109.46735 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99928 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99611 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00327 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99743 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46999 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46979 * 120.00025 * 23 21 19 26 26 H 1.48498 * 109.46942 * 239.99938 * 23 21 19 27 27 C 1.38248 * 119.92374 * 270.25810 * 9 8 7 28 28 H 1.08996 * 109.46828 * 60.00334 * 1 2 3 29 29 H 1.09000 * 109.47079 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47070 * 300.00089 * 1 2 3 31 31 H 1.09001 * 109.47416 * 239.99634 * 2 1 3 32 32 H 1.09001 * 109.47181 * 119.99956 * 2 1 3 33 33 H 0.96997 * 119.99930 * 359.97438 * 3 2 1 34 34 H 1.08995 * 109.47156 * 59.99834 * 6 4 3 35 35 H 1.08996 * 109.47055 * 299.99397 * 6 4 3 36 36 H 1.00896 * 111.00336 * 303.95712 * 7 6 4 37 37 H 1.09000 * 109.46733 * 59.99875 * 8 7 6 38 38 H 1.09000 * 109.47115 * 300.00470 * 8 7 6 39 39 H 1.08004 * 119.92680 * 359.97438 * 10 9 8 40 40 H 1.07997 * 120.00411 * 179.97438 * 11 10 9 41 41 H 1.09000 * 109.47236 * 180.02562 * 14 13 12 42 42 H 1.09005 * 109.47392 * 300.00389 * 14 13 12 43 43 H 1.09002 * 109.46922 * 59.99615 * 14 13 12 44 44 H 1.09002 * 109.47382 * 60.00075 * 17 16 15 45 45 H 1.09001 * 109.46938 * 300.00061 * 17 16 15 46 46 H 1.09001 * 109.47194 * 299.99575 * 18 17 16 47 47 H 1.08992 * 109.47399 * 59.99748 * 18 17 16 48 48 H 0.97000 * 120.00354 * 180.02562 * 22 21 19 49 49 H 1.07994 * 120.00428 * 0.02562 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1315 0.7057 -0.0005 6 6 3.8458 3.0483 -0.0011 7 7 5.3148 3.0483 -0.0010 8 6 5.8412 4.4197 -0.0022 9 6 7.3477 4.3795 -0.0026 10 6 8.0368 4.3603 -1.2010 11 6 9.4187 4.3230 -1.2067 12 6 10.1162 4.3052 -0.0096 13 8 11.4757 4.2679 -0.0134 14 6 12.1205 4.2493 -1.2885 15 6 9.4226 4.3246 1.1966 16 8 10.1028 4.3078 2.3742 17 6 9.3251 4.3288 3.5729 18 6 10.2573 4.3062 4.7859 19 6 9.4371 4.3277 6.0501 20 1 8.3590 4.3552 5.9938 21 6 10.0633 4.3122 7.2784 22 7 11.3762 4.2782 7.3468 23 14 9.0467 4.3396 8.8453 24 1 7.6033 4.3761 8.4983 25 1 9.3330 3.1197 9.6424 26 1 9.3958 5.5439 9.6408 27 6 8.0374 4.3566 1.1953 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.3880 2.1184 -0.0004 34 1 3.4827 3.5624 0.8888 35 1 3.4822 3.5618 -0.8911 36 1 5.6763 2.5225 0.7806 37 1 5.4916 4.9438 0.8873 38 1 5.4918 4.9423 -0.8926 39 1 7.4942 4.3737 -2.1348 40 1 9.9546 4.3076 -2.1442 41 1 13.2011 4.2193 -1.1488 42 1 11.8017 3.3674 -1.8442 43 1 11.8505 5.1466 -1.8453 44 1 8.6735 3.4554 3.5986 45 1 8.7195 5.2348 3.5972 46 1 10.8632 3.4004 4.7617 47 1 10.9086 5.1797 4.7600 48 1 11.8167 4.2670 8.2109 49 1 7.4966 4.3671 2.1301 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064613674.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:16 Heat of formation + Delta-G solvation = -93.841188 kcal Electronic energy + Delta-G solvation = -28032.200154 eV Core-core repulsion = 23959.791593 eV Total energy + Delta-G solvation = -4072.408561 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.31530 -39.91128 -38.11958 -37.38233 -35.78996 -35.14183 -33.33349 -31.51800 -30.72776 -30.44756 -29.32967 -27.85410 -26.65514 -25.07542 -24.18804 -22.89898 -22.37267 -21.23806 -20.81180 -20.43863 -18.28720 -17.53449 -16.86222 -16.64711 -16.40511 -16.12371 -15.88566 -15.78111 -15.28433 -14.94893 -14.74764 -14.57272 -14.50190 -14.42086 -13.99420 -13.89113 -13.59873 -12.92002 -12.76180 -12.68583 -12.50336 -12.29894 -12.26875 -12.18909 -11.87450 -11.75630 -11.47004 -11.44301 -11.01614 -10.92379 -10.80504 -10.74100 -10.52710 -10.06151 -9.79427 -9.61908 -9.41579 -9.24337 -8.72095 -8.45377 -8.41399 -7.44711 -6.06751 -4.11194 1.42810 1.64665 2.41389 2.78080 3.28205 3.34946 3.38436 3.46635 3.78633 3.85982 4.25665 4.41821 4.43244 4.63661 4.65569 4.76248 4.85048 4.90314 4.97317 5.03495 5.06957 5.21523 5.22492 5.29505 5.29720 5.38444 5.40649 5.48381 5.53256 5.59710 5.60411 5.64632 5.87297 6.07924 6.08408 6.09072 6.32071 6.39258 6.60623 6.68475 6.75357 6.89295 7.09165 7.21889 7.37604 7.60573 7.70723 7.87844 7.97942 8.15461 8.28383 8.94644 9.52681 11.04883 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.006421 B = 0.002823 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4359.696004 B = 9916.770685 C =13714.353335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.114 3.886 3 N -0.737 5.737 4 C 0.510 3.490 5 O -0.520 6.520 6 C 0.040 3.960 7 N -0.670 5.670 8 C 0.106 3.894 9 C -0.085 4.085 10 C -0.105 4.105 11 C -0.176 4.176 12 C 0.092 3.908 13 O -0.303 6.303 14 C 0.028 3.972 15 C 0.119 3.881 16 O -0.304 6.304 17 C 0.065 3.935 18 C 0.025 3.975 19 C -0.524 4.524 20 H 0.058 0.942 21 C 0.060 3.940 22 N -0.889 5.889 23 Si 0.898 3.102 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.283 1.283 27 C -0.170 4.170 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.399 0.601 34 H 0.061 0.939 35 H 0.102 0.898 36 H 0.356 0.644 37 H 0.041 0.959 38 H 0.081 0.919 39 H 0.122 0.878 40 H 0.130 0.870 41 H 0.097 0.903 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.049 0.951 45 H 0.048 0.952 46 H 0.028 0.972 47 H 0.028 0.972 48 H 0.262 0.738 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.185 -1.106 -21.137 27.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.010 4.010 3 N -0.392 5.392 4 C 0.295 3.705 5 O -0.394 6.394 6 C -0.092 4.092 7 N -0.303 5.303 8 C -0.022 4.022 9 C -0.086 4.086 10 C -0.124 4.124 11 C -0.195 4.195 12 C 0.046 3.954 13 O -0.216 6.216 14 C -0.067 4.067 15 C 0.072 3.928 16 O -0.217 6.217 17 C -0.009 4.009 18 C -0.012 4.012 19 C -0.563 4.563 20 H 0.076 0.924 21 C -0.142 4.142 22 N -0.527 5.527 23 Si 0.725 3.275 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.209 1.209 27 C -0.190 4.190 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.233 0.767 34 H 0.079 0.921 35 H 0.120 0.880 36 H 0.176 0.824 37 H 0.059 0.941 38 H 0.099 0.901 39 H 0.140 0.860 40 H 0.148 0.852 41 H 0.116 0.884 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.047 0.953 47 H 0.046 0.954 48 H 0.072 0.928 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.063 -1.889 -21.466 27.486 hybrid contribution -1.260 0.608 1.585 2.114 sum -18.323 -1.281 -19.881 27.067 Atomic orbital electron populations 1.22004 0.94437 1.03307 1.02485 1.21286 0.94159 0.83000 1.02532 1.46048 1.07171 1.08948 1.76987 1.20662 0.82078 0.91694 0.76053 1.90751 1.55079 1.46095 1.47519 1.21809 0.90794 0.93701 1.02937 1.60220 1.04251 1.13845 1.51988 1.20809 0.91024 0.89086 1.01249 1.19261 0.94298 1.02462 0.92560 1.20533 0.92867 1.01664 0.97357 1.20955 0.95155 1.07448 0.95949 1.18355 0.82824 1.02470 0.91718 1.86242 1.15918 1.88907 1.30543 1.23016 0.98203 1.00776 0.84747 1.18391 0.89894 0.98904 0.85627 1.86285 1.36161 1.87287 1.12002 1.23315 0.95860 0.99357 0.82383 1.19116 0.94780 0.98954 0.88329 1.21004 0.92987 1.51981 0.90288 0.92403 1.24994 0.94973 0.95007 0.99267 1.69989 1.07835 1.49791 1.25066 0.86446 0.80269 0.77699 0.83041 1.19698 1.20848 1.20862 1.21020 0.92214 1.06750 0.99012 0.91991 0.90758 0.91942 0.91499 0.91464 0.76671 0.92145 0.88025 0.82411 0.94088 0.90063 0.85978 0.85213 0.88439 0.92998 0.93052 0.93285 0.93343 0.95335 0.95362 0.92787 0.84826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.64 10.03 37.16 0.37 -0.27 16 2 C 0.11 0.78 6.39 -4.04 -0.03 0.75 16 3 N -0.74 -5.11 5.56 -60.29 -0.33 -5.45 16 4 C 0.51 5.26 7.87 -10.98 -0.09 5.18 16 5 O -0.52 -7.93 16.20 5.56 0.09 -7.84 16 6 C 0.04 0.33 6.17 -4.98 -0.03 0.30 16 7 N -0.67 -7.53 6.11 -116.34 -0.71 -8.24 16 8 C 0.11 1.11 5.81 -4.98 -0.03 1.08 16 9 C -0.09 -1.14 5.39 -104.62 -0.56 -1.70 16 10 C -0.11 -1.34 9.69 -39.58 -0.38 -1.72 16 11 C -0.18 -2.38 9.04 -39.46 -0.36 -2.73 16 12 C 0.09 1.56 6.70 -39.12 -0.26 1.29 16 13 O -0.30 -5.14 10.28 -34.23 -0.35 -5.49 16 14 C 0.03 0.31 9.81 101.05 0.99 1.30 16 15 C 0.12 2.24 6.70 -39.12 -0.26 1.97 16 16 O -0.30 -6.75 9.92 -34.23 -0.34 -7.09 16 17 C 0.06 1.45 4.68 37.16 0.17 1.62 16 18 C 0.03 0.69 5.34 -27.88 -0.15 0.54 16 19 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 20 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -26.91 13.29 55.43 0.74 -26.18 16 23 Si 0.90 21.54 29.54 -169.99 -5.02 16.51 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 27 C -0.17 -2.73 8.69 -39.46 -0.34 -3.07 16 28 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.40 1.51 8.47 -40.82 -0.35 1.16 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.36 4.62 8.42 -39.29 -0.33 4.29 16 37 H 0.04 0.40 8.09 -51.93 -0.42 -0.02 16 38 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 39 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 40 H 0.13 1.37 6.30 -52.49 -0.33 1.04 16 41 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 43 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 44 H 0.05 1.04 7.65 -51.93 -0.40 0.64 16 45 H 0.05 1.01 7.67 -51.93 -0.40 0.61 16 46 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 49 H 0.13 2.07 6.30 -52.49 -0.33 1.74 16 LS Contribution 410.94 15.07 6.19 6.19 Total: -1.00 -36.02 410.94 -9.07 -45.08 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -7.96 Total: 1.53 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -1.36 Total: -9.03 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: -0.31 Total: -39.86 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.60 Total: -20.43 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -36.02 -9.07 -45.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064613674.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.761 kcal (2) G-P(sol) polarization free energy of solvation -36.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds