Wall clock time and date at job start Sat Apr 11 2020 04:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47171 * 2 1 4 4 C 1.34779 * 120.00072 * 180.02562 * 3 2 1 5 5 O 1.21277 * 119.99863 * 359.97438 * 4 3 2 6 6 C 1.50704 * 120.00028 * 179.97438 * 4 3 2 7 7 N 1.46898 * 109.46998 * 179.97438 * 6 4 3 8 8 C 1.46898 * 111.00059 * 179.97438 * 7 6 4 9 9 C 1.50700 * 109.47526 * 180.02562 * 8 7 6 10 10 C 1.38246 * 119.92759 * 90.00118 * 9 8 7 11 11 C 1.38242 * 120.14884 * 180.02562 * 10 9 8 12 12 C 1.38565 * 119.99815 * 359.97438 * 11 10 9 13 13 O 1.35996 * 120.07637 * 179.97438 * 12 11 10 14 14 C 1.42898 * 116.99713 * 0.02562 * 13 12 11 15 15 C 1.39160 * 119.85398 * 0.02562 * 12 11 10 16 16 O 1.35995 * 120.07175 * 180.02562 * 15 12 11 17 17 C 1.42903 * 116.99587 * 180.02562 * 16 15 12 18 18 C 1.53000 * 109.46726 * 180.02562 * 17 16 15 19 19 C 1.50706 * 109.46735 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99928 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99611 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00327 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99743 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46999 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46979 * 120.00025 * 23 21 19 26 26 H 1.48498 * 109.46942 * 239.99938 * 23 21 19 27 27 C 1.38248 * 119.92374 * 270.25810 * 9 8 7 28 28 H 1.08996 * 109.46828 * 60.00334 * 1 2 3 29 29 H 1.09000 * 109.47079 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47070 * 300.00089 * 1 2 3 31 31 H 1.09001 * 109.47416 * 239.99634 * 2 1 3 32 32 H 1.09001 * 109.47181 * 119.99956 * 2 1 3 33 33 H 0.96997 * 119.99930 * 359.97438 * 3 2 1 34 34 H 1.08995 * 109.47156 * 59.99834 * 6 4 3 35 35 H 1.08996 * 109.47055 * 299.99397 * 6 4 3 36 36 H 1.00896 * 111.00336 * 303.95712 * 7 6 4 37 37 H 1.09000 * 109.46733 * 59.99875 * 8 7 6 38 38 H 1.09000 * 109.47115 * 300.00470 * 8 7 6 39 39 H 1.08004 * 119.92680 * 359.97438 * 10 9 8 40 40 H 1.07997 * 120.00411 * 179.97438 * 11 10 9 41 41 H 1.09000 * 109.47236 * 180.02562 * 14 13 12 42 42 H 1.09005 * 109.47392 * 300.00389 * 14 13 12 43 43 H 1.09002 * 109.46922 * 59.99615 * 14 13 12 44 44 H 1.09002 * 109.47382 * 60.00075 * 17 16 15 45 45 H 1.09001 * 109.46938 * 300.00061 * 17 16 15 46 46 H 1.09001 * 109.47194 * 299.99575 * 18 17 16 47 47 H 1.08992 * 109.47399 * 59.99748 * 18 17 16 48 48 H 0.97000 * 120.00354 * 180.02562 * 22 21 19 49 49 H 1.07994 * 120.00428 * 0.02562 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1315 0.7057 -0.0005 6 6 3.8458 3.0483 -0.0011 7 7 5.3148 3.0483 -0.0010 8 6 5.8412 4.4197 -0.0022 9 6 7.3477 4.3795 -0.0026 10 6 8.0368 4.3603 -1.2010 11 6 9.4187 4.3230 -1.2067 12 6 10.1162 4.3052 -0.0096 13 8 11.4757 4.2679 -0.0134 14 6 12.1205 4.2493 -1.2885 15 6 9.4226 4.3246 1.1966 16 8 10.1028 4.3078 2.3742 17 6 9.3251 4.3288 3.5729 18 6 10.2573 4.3062 4.7859 19 6 9.4371 4.3277 6.0501 20 1 8.3590 4.3552 5.9938 21 6 10.0633 4.3122 7.2784 22 7 11.3762 4.2782 7.3468 23 14 9.0467 4.3396 8.8453 24 1 7.6033 4.3761 8.4983 25 1 9.3330 3.1197 9.6424 26 1 9.3958 5.5439 9.6408 27 6 8.0374 4.3566 1.1953 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.3880 2.1184 -0.0004 34 1 3.4827 3.5624 0.8888 35 1 3.4822 3.5618 -0.8911 36 1 5.6763 2.5225 0.7806 37 1 5.4916 4.9438 0.8873 38 1 5.4918 4.9423 -0.8926 39 1 7.4942 4.3737 -2.1348 40 1 9.9546 4.3076 -2.1442 41 1 13.2011 4.2193 -1.1488 42 1 11.8017 3.3674 -1.8442 43 1 11.8505 5.1466 -1.8453 44 1 8.6735 3.4554 3.5986 45 1 8.7195 5.2348 3.5972 46 1 10.8632 3.4004 4.7617 47 1 10.9086 5.1797 4.7600 48 1 11.8167 4.2670 8.2109 49 1 7.4966 4.3671 2.1301 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064613674.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:15 Heat of formation + Delta-G solvation = -120.632018 kcal Electronic energy + Delta-G solvation = -28033.361891 eV Core-core repulsion = 23959.791593 eV Total energy + Delta-G solvation = -4073.570298 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.52051 -40.70351 -39.46773 -38.52067 -36.54545 -36.01595 -35.45221 -32.62794 -32.13583 -31.33683 -30.75673 -28.74195 -27.52683 -26.99639 -25.04552 -23.94903 -23.43491 -22.55166 -21.90941 -21.54721 -19.56154 -18.64975 -18.29059 -17.66191 -17.56462 -17.21916 -17.13318 -16.86438 -16.53776 -16.33840 -15.97386 -15.66203 -15.48594 -15.28841 -15.08766 -14.78523 -14.48335 -14.33685 -14.16939 -14.04583 -13.35367 -13.32233 -13.21271 -13.05785 -12.86065 -12.69099 -12.68923 -12.66554 -12.52783 -12.34683 -12.15383 -11.98332 -11.87826 -11.59735 -11.58661 -11.39438 -10.89709 -10.64053 -10.10033 -9.69899 -9.38547 -8.71013 -8.27296 -6.41538 0.30195 0.47185 1.39351 1.41293 1.54524 1.65770 2.15208 2.26887 2.43239 2.51279 2.71772 3.06749 3.42385 3.79948 3.83227 3.88132 4.08546 4.15490 4.16591 4.20771 4.25142 4.28038 4.40585 4.42511 4.42660 4.46137 4.46307 4.51751 4.63451 4.64346 4.73179 4.74223 4.88266 4.95307 5.05530 5.20247 5.26104 5.29643 5.31826 5.45131 5.48668 5.61019 5.67491 5.80417 5.93188 6.04520 6.20526 6.25627 6.61266 6.71561 6.74570 7.28516 7.30685 8.86361 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.006421 B = 0.002823 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4359.696004 B = 9916.770685 C =13714.353335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.110 3.890 3 N -0.720 5.720 4 C 0.504 3.496 5 O -0.580 6.580 6 C 0.044 3.956 7 N -0.686 5.686 8 C 0.112 3.888 9 C -0.085 4.085 10 C -0.094 4.094 11 C -0.168 4.168 12 C 0.074 3.926 13 O -0.342 6.342 14 C 0.018 3.982 15 C 0.068 3.932 16 O -0.337 6.337 17 C 0.086 3.914 18 C 0.029 3.971 19 C -0.544 4.544 20 H 0.071 0.929 21 C -0.001 4.001 22 N -0.932 5.932 23 Si 0.979 3.021 24 H -0.256 1.256 25 H -0.277 1.277 26 H -0.275 1.275 27 C -0.173 4.173 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.418 0.582 34 H 0.084 0.916 35 H 0.132 0.868 36 H 0.341 0.659 37 H 0.048 0.952 38 H 0.110 0.890 39 H 0.158 0.842 40 H 0.163 0.837 41 H 0.110 0.890 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.056 0.944 45 H 0.060 0.940 46 H -0.006 1.006 47 H -0.003 1.003 48 H 0.267 0.733 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.754 -0.110 -22.905 31.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.014 4.014 3 N -0.375 5.375 4 C 0.291 3.709 5 O -0.459 6.459 6 C -0.088 4.088 7 N -0.318 5.318 8 C -0.016 4.016 9 C -0.085 4.085 10 C -0.113 4.113 11 C -0.187 4.187 12 C 0.028 3.972 13 O -0.257 6.257 14 C -0.076 4.076 15 C 0.022 3.978 16 O -0.252 6.252 17 C 0.011 3.989 18 C -0.008 4.008 19 C -0.581 4.581 20 H 0.090 0.910 21 C -0.199 4.199 22 N -0.571 5.571 23 Si 0.802 3.198 24 H -0.180 1.180 25 H -0.203 1.203 26 H -0.201 1.201 27 C -0.192 4.192 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.255 0.745 34 H 0.101 0.899 35 H 0.150 0.850 36 H 0.159 0.841 37 H 0.067 0.933 38 H 0.128 0.872 39 H 0.175 0.825 40 H 0.180 0.820 41 H 0.128 0.872 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.012 0.988 47 H 0.015 0.985 48 H 0.076 0.924 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -20.697 -0.858 -23.280 31.162 hybrid contribution -0.156 0.279 1.941 1.967 sum -20.853 -0.579 -21.339 29.842 Atomic orbital electron populations 1.21943 0.91719 1.04091 1.03440 1.21328 0.96295 0.82739 1.01050 1.45961 1.06614 1.09723 1.75180 1.21173 0.82568 0.92137 0.75064 1.90729 1.56689 1.47887 1.50577 1.21921 0.89018 0.92456 1.05366 1.60226 1.06215 1.13935 1.51459 1.20856 0.88693 0.89045 1.03018 1.19645 0.96215 1.00948 0.91731 1.21028 0.92709 0.99071 0.98472 1.21343 0.95718 1.05754 0.95841 1.18670 0.83206 1.03109 0.92178 1.86183 1.16352 1.89180 1.33972 1.23343 0.98636 1.02471 0.83114 1.18873 0.91353 1.02706 0.84831 1.86180 1.37190 1.88810 1.12980 1.22830 0.94369 1.00174 0.81494 1.18953 0.94939 0.95756 0.91167 1.21406 0.93754 1.52030 0.90938 0.91038 1.26096 0.96235 0.94134 1.03453 1.70142 1.10024 1.50625 1.26336 0.85197 0.79008 0.77901 0.77694 1.17971 1.20293 1.20057 1.21123 0.91220 1.06631 1.00260 0.90755 0.90138 0.91146 0.92827 0.93292 0.74504 0.89861 0.84987 0.84149 0.93344 0.87196 0.82452 0.81951 0.87219 0.91397 0.91021 0.92617 0.92139 0.98766 0.98482 0.92436 0.85147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.03 71.98 0.72 -0.15 16 2 C 0.11 1.42 6.39 86.38 0.55 1.98 16 3 N -0.72 -8.70 5.56 -463.06 -2.57 -11.27 16 4 C 0.50 9.75 7.87 87.66 0.69 10.44 16 5 O -0.58 -17.90 16.20 -3.02 -0.05 -17.95 16 6 C 0.04 0.59 6.17 85.56 0.53 1.11 16 7 N -0.69 -13.95 6.11 -522.00 -3.19 -17.14 16 8 C 0.11 1.97 5.81 85.56 0.50 2.46 16 9 C -0.08 -2.09 5.39 -19.86 -0.11 -2.20 16 10 C -0.09 -2.10 9.69 22.27 0.22 -1.88 16 11 C -0.17 -4.18 9.04 22.35 0.20 -3.97 16 12 C 0.07 2.53 6.70 22.57 0.15 2.68 16 13 O -0.34 -11.97 10.28 -79.64 -0.82 -12.79 16 14 C 0.02 0.39 9.81 113.37 1.11 1.50 16 15 C 0.07 2.65 6.70 22.57 0.15 2.80 16 16 O -0.34 -16.02 9.92 -79.63 -0.79 -16.81 16 17 C 0.09 4.04 4.68 71.98 0.34 4.38 16 18 C 0.03 1.68 5.34 29.85 0.16 1.84 16 19 C -0.54 -31.73 9.11 25.60 0.23 -31.49 16 20 H 0.07 3.88 7.74 -2.91 -0.02 3.86 16 21 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 22 N -0.93 -58.43 13.29 21.45 0.28 -58.14 16 23 Si 0.98 44.46 29.54 68.60 2.03 46.48 16 24 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 26 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 27 C -0.17 -5.57 8.69 22.35 0.19 -5.38 16 28 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.42 1.89 8.47 -92.71 -0.79 1.11 16 34 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.34 8.67 8.42 -89.70 -0.76 7.92 16 37 H 0.05 0.79 8.09 -2.39 -0.02 0.78 16 38 H 0.11 1.34 8.08 -2.39 -0.02 1.32 16 39 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 40 H 0.16 2.86 6.30 -2.91 -0.02 2.84 16 41 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.07 1.19 7.66 -2.38 -0.02 1.17 16 43 H 0.07 1.19 7.66 -2.39 -0.02 1.17 16 44 H 0.06 2.49 7.65 -2.39 -0.02 2.47 16 45 H 0.06 2.64 7.67 -2.39 -0.02 2.62 16 46 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 47 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 48 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 49 H 0.13 4.13 6.30 -2.91 -0.02 4.11 16 Total: -1.00 -84.57 410.94 0.41 -84.16 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -0.58 Total: 18.93 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: 6.10 Total: -15.47 kcal Atomic # 7 Polarization: -81.07 SS G_CDS: -5.48 Total: -86.55 kcal Atomic # 8 Polarization: -45.89 SS G_CDS: -1.66 Total: -47.55 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -84.57 0.41 -84.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064613674.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.470 kcal (2) G-P(sol) polarization free energy of solvation -84.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds