Wall clock time and date at job start Sat Apr 11 2020 04:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35996 * 116.99327 * 2 1 4 4 C 1.38563 * 120.07835 * 0.02562 * 3 2 1 5 5 C 1.38239 * 120.00022 * 179.70352 * 4 3 2 6 6 C 1.38250 * 120.14789 * 0.55021 * 5 4 3 7 7 C 1.50693 * 119.93136 * 179.72426 * 6 5 4 8 8 N 1.46494 * 109.47308 * 269.72575 * 7 6 5 9 9 C 1.46499 * 120.00047 * 269.72234 * 8 7 6 10 10 C 1.34778 * 119.99850 * 89.99586 * 8 7 6 11 11 O 1.21282 * 120.00499 * 355.31991 * 10 8 7 12 12 C 1.50703 * 119.99950 * 175.31958 * 10 8 7 13 13 H 1.08997 * 109.47441 * 53.66472 * 12 10 8 14 14 C 1.53006 * 109.47188 * 293.66688 * 12 10 8 15 15 N 1.46496 * 109.47403 * 173.66768 * 12 10 8 16 16 C 1.46499 * 120.00027 * 59.99804 * 15 12 10 17 17 C 1.36933 * 120.00329 * 240.00393 * 15 12 10 18 18 H 1.08003 * 120.00076 * 24.67206 * 17 15 12 19 19 C 1.38816 * 120.00142 * 204.67971 * 17 15 12 20 20 N 1.31615 * 120.00166 * 9.21173 * 19 17 15 21 21 Si 1.86799 * 119.99925 * 189.20863 * 19 17 15 22 22 H 1.48503 * 109.47322 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47438 * 120.00120 * 21 19 17 24 24 H 1.48501 * 109.47328 * 240.00024 * 21 19 17 25 25 C 1.38249 * 120.14410 * 359.44772 * 6 5 4 26 26 C 1.38563 * 119.99657 * 0.27666 * 25 6 5 27 27 O 1.36002 * 120.07181 * 179.97438 * 26 25 6 28 28 C 1.42904 * 116.99697 * 0.02562 * 27 26 25 29 29 H 1.08993 * 109.47188 * 299.99664 * 1 2 3 30 30 H 1.08997 * 109.46941 * 60.00117 * 1 2 3 31 31 H 1.09008 * 109.46709 * 179.97438 * 1 2 3 32 32 H 1.08004 * 119.99434 * 0.02562 * 4 3 2 33 33 H 1.08004 * 119.92662 * 180.29403 * 5 4 3 34 34 H 1.09005 * 109.47726 * 149.72154 * 7 6 5 35 35 H 1.09011 * 109.46939 * 29.72709 * 7 6 5 36 36 H 1.08996 * 109.47158 * 91.05661 * 9 8 7 37 37 H 1.08999 * 109.46947 * 211.05400 * 9 8 7 38 38 H 1.09002 * 109.47146 * 331.05313 * 9 8 7 39 39 H 1.09001 * 109.46981 * 167.80933 * 14 12 10 40 40 H 1.09003 * 109.46821 * 287.80556 * 14 12 10 41 41 H 1.09001 * 109.46996 * 47.80590 * 14 12 10 42 42 H 1.08997 * 109.47493 * 94.69772 * 16 15 12 43 43 H 1.09002 * 109.47573 * 214.70204 * 16 15 12 44 44 H 1.09001 * 109.47451 * 334.69921 * 16 15 12 45 45 H 0.96998 * 120.00389 * 179.97438 * 20 19 17 46 46 H 1.07996 * 119.99962 * 180.25300 * 25 6 5 47 47 H 1.08995 * 109.46946 * 180.02562 * 28 27 26 48 48 H 1.08998 * 109.46859 * 299.99272 * 28 27 26 49 49 H 1.08995 * 109.47305 * 59.99246 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2931 2.3748 0.0005 5 6 1.9222 3.6058 0.0067 6 6 3.3027 3.6800 0.0009 7 6 3.9834 5.0244 0.0014 8 7 4.2039 5.4607 -1.3796 9 6 5.4487 5.1110 -2.0684 10 6 3.2639 6.1886 -2.0145 11 8 2.2011 6.4104 -1.4741 12 6 3.5336 6.7268 -3.3961 13 1 3.8394 5.9108 -4.0507 14 6 4.6496 7.7713 -3.3277 15 7 2.3162 7.3469 -3.9248 16 6 1.7027 8.4747 -3.2192 17 6 1.7516 6.8724 -5.0786 18 1 1.9250 5.8512 -5.3844 19 6 0.9565 7.7039 -5.8553 20 7 0.8903 8.9906 -5.5862 21 14 -0.0194 6.9968 -7.2825 22 1 0.2261 5.5351 -7.3741 23 1 -1.4672 7.2432 -7.0625 24 1 0.4074 7.6500 -8.5460 25 6 4.0602 2.5235 0.0004 26 6 3.4359 1.2865 -0.0001 27 8 4.1795 0.1478 -0.0011 28 6 5.6003 0.3009 -0.0011 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 0.2145 2.3196 0.0014 33 1 1.3340 4.5115 0.0119 34 1 4.9416 4.9465 0.5152 35 1 3.3535 5.7504 0.5157 36 1 5.3182 4.1670 -2.5975 37 1 5.7020 5.8953 -2.7816 38 1 6.2519 5.0104 -1.3384 39 1 4.9939 8.0017 -4.3359 40 1 4.2699 8.6784 -2.8573 41 1 5.4799 7.3780 -2.7411 42 1 2.0598 9.4103 -3.6495 43 1 0.6186 8.4193 -3.3188 44 1 1.9730 8.4336 -2.1640 45 1 0.3350 9.5717 -6.1292 46 1 5.1384 2.5842 0.0000 47 1 6.0716 -0.6819 -0.0024 48 1 5.9064 0.8514 -0.8907 49 1 5.9066 0.8500 0.8892 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972176.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:19 Heat of formation + Delta-G solvation = -35.456993 kcal Electronic energy + Delta-G solvation = -30268.724802 eV Core-core repulsion = 26198.847969 eV Total energy + Delta-G solvation = -4069.876832 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.66283 -39.51681 -38.50976 -37.20897 -35.45388 -34.93331 -32.27553 -31.00315 -30.35130 -29.14281 -27.98554 -27.37800 -26.55583 -25.93985 -25.45729 -23.69650 -22.20601 -21.84682 -20.77105 -18.67763 -18.34405 -17.16815 -16.99090 -16.73481 -16.18215 -15.92337 -15.76253 -15.34720 -15.20861 -14.78120 -14.70848 -14.57104 -13.95097 -13.79096 -13.45379 -13.30691 -12.98548 -12.67265 -12.61806 -12.56046 -12.34301 -12.15915 -12.04855 -11.62398 -11.35861 -11.32430 -11.30344 -11.10333 -11.00655 -10.95222 -10.78619 -10.70533 -10.53852 -10.23131 -9.99312 -9.83753 -8.99387 -8.72665 -8.47425 -8.34542 -7.77941 -6.68680 -5.67059 -3.16272 1.23613 1.42724 3.16710 3.19588 3.31065 3.35498 3.40835 3.47252 3.49411 3.86095 4.52123 4.66048 4.78617 4.91584 4.93401 4.97673 4.99290 5.06581 5.18265 5.24120 5.29368 5.33171 5.34571 5.40310 5.45083 5.51225 5.53363 5.58641 5.64883 5.78460 5.88158 5.95907 6.03919 6.09437 6.32520 6.34403 6.52209 6.66305 6.67016 6.80670 6.89249 6.95705 7.09578 7.51225 7.60390 7.78683 7.84132 7.92339 8.43135 8.87198 9.28431 9.89087 10.38671 11.36365 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011910 B = 0.003356 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.348548 B = 8342.225952 C = 9520.300611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.310 6.310 3 C 0.097 3.903 4 C -0.173 4.173 5 C -0.085 4.085 6 C -0.099 4.099 7 C 0.159 3.841 8 N -0.623 5.623 9 C 0.069 3.931 10 C 0.497 3.503 11 O -0.521 6.521 12 C 0.161 3.839 13 H 0.084 0.916 14 C -0.162 4.162 15 N -0.573 5.573 16 C 0.169 3.831 17 C -0.257 4.257 18 H 0.066 0.934 19 C 0.007 3.993 20 N -0.903 5.903 21 Si 0.905 3.095 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.290 1.290 25 C -0.159 4.159 26 C 0.090 3.910 27 O -0.310 6.310 28 C 0.028 3.972 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.048 0.952 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.052 0.948 42 H 0.024 0.976 43 H 0.039 0.961 44 H 0.011 0.989 45 H 0.251 0.749 46 H 0.131 0.869 47 H 0.097 0.903 48 H 0.054 0.946 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.031 -14.306 13.611 22.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.224 6.224 3 C 0.052 3.948 4 C -0.192 4.192 5 C -0.103 4.103 6 C -0.100 4.100 7 C 0.036 3.964 8 N -0.359 5.359 9 C -0.075 4.075 10 C 0.284 3.716 11 O -0.395 6.395 12 C 0.047 3.953 13 H 0.102 0.898 14 C -0.221 4.221 15 N -0.294 5.294 16 C 0.025 3.975 17 C -0.386 4.386 18 H 0.083 0.917 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.735 3.265 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.216 1.216 25 C -0.178 4.178 26 C 0.045 3.955 27 O -0.223 6.223 28 C -0.067 4.067 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.152 0.848 33 H 0.154 0.846 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.067 0.933 37 H 0.107 0.893 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.042 0.958 43 H 0.058 0.942 44 H 0.029 0.971 45 H 0.062 0.938 46 H 0.149 0.851 47 H 0.115 0.885 48 H 0.072 0.928 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.320 -14.388 13.776 21.993 hybrid contribution -0.595 -0.160 -0.854 1.053 sum 8.725 -14.548 12.922 21.325 Atomic orbital electron populations 1.23054 0.78671 1.03733 1.01428 1.86135 1.20948 1.26099 1.89185 1.18261 0.89140 0.85136 1.02292 1.21109 1.00013 0.91484 1.06577 1.21004 0.94170 0.97490 0.97673 1.20008 0.93778 0.95085 1.01159 1.20214 0.99805 0.92074 0.84322 1.48228 1.19244 1.55024 1.13453 1.22046 0.85765 1.01576 0.98071 1.22818 0.82979 0.76486 0.89325 1.90585 1.24126 1.57438 1.67306 1.20223 0.89397 0.95776 0.89891 0.89819 1.22423 0.97404 1.00179 1.02128 1.43652 1.24160 1.36409 1.25133 1.20753 0.97106 0.89024 0.90583 1.19227 1.26581 0.94581 0.98232 0.91658 1.25024 1.01068 0.95045 0.98059 1.70091 1.41677 1.02586 1.40457 0.86173 0.79846 0.78327 0.82109 1.20347 1.21596 1.21649 1.20878 0.99872 0.90563 1.06499 1.18141 0.88137 0.85934 1.03299 1.86154 1.18405 1.28379 1.89404 1.23021 0.79002 1.03574 1.01152 0.92764 0.92560 0.88385 0.84846 0.84609 0.90489 0.89339 0.93291 0.89316 0.91891 0.91770 0.92362 0.92966 0.95751 0.94249 0.97079 0.93819 0.85085 0.88457 0.92763 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.25 10.28 -34.23 -0.35 -4.61 16 3 C 0.10 1.40 6.70 -39.12 -0.26 1.14 16 4 C -0.17 -2.42 9.04 -39.46 -0.36 -2.77 16 5 C -0.08 -1.27 9.57 -39.58 -0.38 -1.65 16 6 C -0.10 -1.35 5.46 -104.62 -0.57 -1.92 16 7 C 0.16 2.05 5.54 -5.20 -0.03 2.02 16 8 N -0.62 -9.12 2.85 -182.96 -0.52 -9.64 16 9 C 0.07 0.75 9.80 59.85 0.59 1.34 16 10 C 0.50 9.64 6.78 -10.98 -0.07 9.57 16 11 O -0.52 -11.87 13.18 5.56 0.07 -11.80 16 12 C 0.16 3.31 2.31 -69.08 -0.16 3.15 16 13 H 0.08 1.67 7.53 -51.93 -0.39 1.28 16 14 C -0.16 -2.82 8.85 37.16 0.33 -2.49 16 15 N -0.57 -14.94 2.63 -174.81 -0.46 -15.40 16 16 C 0.17 4.51 7.25 59.85 0.43 4.94 16 17 C -0.26 -7.25 9.58 -15.06 -0.14 -7.39 16 18 H 0.07 1.81 7.82 -52.48 -0.41 1.40 16 19 C 0.01 0.19 5.17 -17.43 -0.09 0.10 16 20 N -0.90 -26.83 10.61 55.49 0.59 -26.24 16 21 Si 0.91 22.31 29.56 -169.99 -5.03 17.29 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 C -0.16 -1.95 8.69 -39.46 -0.34 -2.29 16 26 C 0.09 1.24 6.70 -39.12 -0.26 0.98 16 27 O -0.31 -4.00 10.28 -34.25 -0.35 -4.36 16 28 C 0.03 0.22 9.81 101.05 0.99 1.22 16 29 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 30 H 0.06 0.52 7.66 -51.93 -0.40 0.13 16 31 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 32 H 0.13 1.60 6.30 -52.48 -0.33 1.27 16 33 H 0.14 2.23 7.41 -52.48 -0.39 1.84 16 34 H 0.08 0.74 7.82 -51.93 -0.41 0.34 16 35 H 0.09 1.25 7.43 -51.92 -0.39 0.87 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.97 4.19 -51.93 -0.22 0.75 16 38 H 0.06 0.50 7.88 -51.93 -0.41 0.09 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 1.10 7.30 -51.93 -0.38 0.72 16 41 H 0.05 0.70 5.37 -51.93 -0.28 0.43 16 42 H 0.02 0.68 7.34 -51.93 -0.38 0.30 16 43 H 0.04 1.14 7.32 -51.93 -0.38 0.76 16 44 H 0.01 0.27 6.22 -51.93 -0.32 -0.05 16 45 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 46 H 0.13 1.24 6.30 -52.49 -0.33 0.91 16 47 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 49 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 LS Contribution 389.54 15.07 5.87 5.87 Total: -1.00 -35.38 389.54 -6.95 -42.33 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -7.43 Total: -0.61 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 0.66 Total: 7.17 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -0.39 Total: -51.29 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.63 Total: -20.76 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.29 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.38 -6.95 -42.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972176.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.871 kcal (2) G-P(sol) polarization free energy of solvation -35.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds