Wall clock time and date at job start Sat Apr 11 2020 04:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35996 * 116.99327 * 2 1 4 4 C 1.38563 * 120.07835 * 0.02562 * 3 2 1 5 5 C 1.38239 * 120.00022 * 179.70352 * 4 3 2 6 6 C 1.38250 * 120.14789 * 0.55021 * 5 4 3 7 7 C 1.50693 * 119.93136 * 179.72426 * 6 5 4 8 8 N 1.46494 * 109.47308 * 269.72575 * 7 6 5 9 9 C 1.46499 * 120.00047 * 269.72234 * 8 7 6 10 10 C 1.34778 * 119.99850 * 89.99586 * 8 7 6 11 11 O 1.21282 * 120.00499 * 355.31991 * 10 8 7 12 12 C 1.50703 * 119.99950 * 175.31958 * 10 8 7 13 13 H 1.08997 * 109.47441 * 53.66472 * 12 10 8 14 14 C 1.53006 * 109.47188 * 293.66688 * 12 10 8 15 15 N 1.46496 * 109.47403 * 173.66768 * 12 10 8 16 16 C 1.46499 * 120.00027 * 59.99804 * 15 12 10 17 17 C 1.36933 * 120.00329 * 240.00393 * 15 12 10 18 18 H 1.08003 * 120.00076 * 24.67206 * 17 15 12 19 19 C 1.38816 * 120.00142 * 204.67971 * 17 15 12 20 20 N 1.31615 * 120.00166 * 9.21173 * 19 17 15 21 21 Si 1.86799 * 119.99925 * 189.20863 * 19 17 15 22 22 H 1.48503 * 109.47322 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47438 * 120.00120 * 21 19 17 24 24 H 1.48501 * 109.47328 * 240.00024 * 21 19 17 25 25 C 1.38249 * 120.14410 * 359.44772 * 6 5 4 26 26 C 1.38563 * 119.99657 * 0.27666 * 25 6 5 27 27 O 1.36002 * 120.07181 * 179.97438 * 26 25 6 28 28 C 1.42904 * 116.99697 * 0.02562 * 27 26 25 29 29 H 1.08993 * 109.47188 * 299.99664 * 1 2 3 30 30 H 1.08997 * 109.46941 * 60.00117 * 1 2 3 31 31 H 1.09008 * 109.46709 * 179.97438 * 1 2 3 32 32 H 1.08004 * 119.99434 * 0.02562 * 4 3 2 33 33 H 1.08004 * 119.92662 * 180.29403 * 5 4 3 34 34 H 1.09005 * 109.47726 * 149.72154 * 7 6 5 35 35 H 1.09011 * 109.46939 * 29.72709 * 7 6 5 36 36 H 1.08996 * 109.47158 * 91.05661 * 9 8 7 37 37 H 1.08999 * 109.46947 * 211.05400 * 9 8 7 38 38 H 1.09002 * 109.47146 * 331.05313 * 9 8 7 39 39 H 1.09001 * 109.46981 * 167.80933 * 14 12 10 40 40 H 1.09003 * 109.46821 * 287.80556 * 14 12 10 41 41 H 1.09001 * 109.46996 * 47.80590 * 14 12 10 42 42 H 1.08997 * 109.47493 * 94.69772 * 16 15 12 43 43 H 1.09002 * 109.47573 * 214.70204 * 16 15 12 44 44 H 1.09001 * 109.47451 * 334.69921 * 16 15 12 45 45 H 0.96998 * 120.00389 * 179.97438 * 20 19 17 46 46 H 1.07996 * 119.99962 * 180.25300 * 25 6 5 47 47 H 1.08995 * 109.46946 * 180.02562 * 28 27 26 48 48 H 1.08998 * 109.46859 * 299.99272 * 28 27 26 49 49 H 1.08995 * 109.47305 * 59.99246 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2931 2.3748 0.0005 5 6 1.9222 3.6058 0.0067 6 6 3.3027 3.6800 0.0009 7 6 3.9834 5.0244 0.0014 8 7 4.2039 5.4607 -1.3796 9 6 5.4487 5.1110 -2.0684 10 6 3.2639 6.1886 -2.0145 11 8 2.2011 6.4104 -1.4741 12 6 3.5336 6.7268 -3.3961 13 1 3.8394 5.9108 -4.0507 14 6 4.6496 7.7713 -3.3277 15 7 2.3162 7.3469 -3.9248 16 6 1.7027 8.4747 -3.2192 17 6 1.7516 6.8724 -5.0786 18 1 1.9250 5.8512 -5.3844 19 6 0.9565 7.7039 -5.8553 20 7 0.8903 8.9906 -5.5862 21 14 -0.0194 6.9968 -7.2825 22 1 0.2261 5.5351 -7.3741 23 1 -1.4672 7.2432 -7.0625 24 1 0.4074 7.6500 -8.5460 25 6 4.0602 2.5235 0.0004 26 6 3.4359 1.2865 -0.0001 27 8 4.1795 0.1478 -0.0011 28 6 5.6003 0.3009 -0.0011 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 0.2145 2.3196 0.0014 33 1 1.3340 4.5115 0.0119 34 1 4.9416 4.9465 0.5152 35 1 3.3535 5.7504 0.5157 36 1 5.3182 4.1670 -2.5975 37 1 5.7020 5.8953 -2.7816 38 1 6.2519 5.0104 -1.3384 39 1 4.9939 8.0017 -4.3359 40 1 4.2699 8.6784 -2.8573 41 1 5.4799 7.3780 -2.7411 42 1 2.0598 9.4103 -3.6495 43 1 0.6186 8.4193 -3.3188 44 1 1.9730 8.4336 -2.1640 45 1 0.3350 9.5717 -6.1292 46 1 5.1384 2.5842 0.0000 47 1 6.0716 -0.6819 -0.0024 48 1 5.9064 0.8514 -0.8907 49 1 5.9066 0.8500 0.8892 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972176.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:18 Heat of formation + Delta-G solvation = -58.277457 kcal Electronic energy + Delta-G solvation = -30269.714371 eV Core-core repulsion = 26198.847969 eV Total energy + Delta-G solvation = -4070.866402 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.66816 -40.90014 -39.41771 -38.33407 -37.19143 -36.29441 -34.06041 -32.29714 -31.32533 -30.80728 -28.90639 -28.08186 -28.05528 -27.53322 -26.70368 -25.40646 -23.33889 -23.08841 -22.12262 -20.00650 -19.39837 -18.92929 -18.09317 -17.86865 -17.44241 -17.16214 -17.01006 -16.67521 -16.31810 -16.14461 -15.72721 -15.68163 -15.41733 -15.06782 -14.79223 -14.66549 -14.36882 -14.24627 -13.84737 -13.63838 -13.48094 -13.17741 -13.05540 -13.00284 -12.90870 -12.73654 -12.58591 -12.35426 -12.27194 -12.15711 -12.11618 -12.08514 -12.04883 -11.99698 -11.88682 -11.82013 -10.77901 -10.43762 -9.74581 -9.54952 -8.84188 -8.72897 -7.82467 -5.34423 0.22056 0.36379 1.43560 1.45630 1.55693 1.84476 2.15699 2.31641 2.36147 2.50094 2.78719 3.31022 3.62669 3.71518 3.80407 3.88950 4.02272 4.16095 4.32342 4.33151 4.34448 4.36615 4.39515 4.41693 4.46497 4.46610 4.54130 4.64293 4.67177 4.73036 4.78592 4.82465 4.86288 4.93521 5.01348 5.07454 5.14568 5.26788 5.39777 5.40990 5.59753 5.60864 5.65046 5.68327 5.75412 6.07876 6.29199 6.51583 6.59053 7.12514 7.41781 7.84164 8.28827 9.20083 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011910 B = 0.003356 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.348548 B = 8342.225952 C = 9520.300611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.327 6.327 3 C 0.080 3.920 4 C -0.180 4.180 5 C -0.109 4.109 6 C -0.104 4.104 7 C 0.160 3.840 8 N -0.612 5.612 9 C 0.059 3.941 10 C 0.495 3.505 11 O -0.566 6.566 12 C 0.152 3.848 13 H 0.090 0.910 14 C -0.149 4.149 15 N -0.594 5.594 16 C 0.197 3.803 17 C -0.267 4.267 18 H 0.067 0.933 19 C -0.048 4.048 20 N -0.935 5.935 21 Si 0.970 3.030 22 H -0.268 1.268 23 H -0.294 1.294 24 H -0.284 1.284 25 C -0.147 4.147 26 C 0.082 3.918 27 O -0.330 6.330 28 C 0.016 3.984 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.122 0.878 32 H 0.142 0.858 33 H 0.111 0.889 34 H 0.124 0.876 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.059 0.941 40 H 0.038 0.962 41 H 0.099 0.901 42 H 0.005 0.995 43 H 0.001 0.999 44 H 0.021 0.979 45 H 0.248 0.752 46 H 0.168 0.832 47 H 0.116 0.884 48 H 0.065 0.935 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.022 -16.392 14.081 25.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.242 6.242 3 C 0.035 3.965 4 C -0.199 4.199 5 C -0.128 4.128 6 C -0.105 4.105 7 C 0.037 3.963 8 N -0.346 5.346 9 C -0.083 4.083 10 C 0.282 3.718 11 O -0.444 6.444 12 C 0.041 3.959 13 H 0.108 0.892 14 C -0.208 4.208 15 N -0.315 5.315 16 C 0.052 3.948 17 C -0.397 4.397 18 H 0.085 0.915 19 C -0.244 4.244 20 N -0.581 5.581 21 Si 0.798 3.202 22 H -0.192 1.192 23 H -0.221 1.221 24 H -0.211 1.211 25 C -0.165 4.165 26 C 0.037 3.963 27 O -0.244 6.244 28 C -0.078 4.078 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.140 0.860 32 H 0.159 0.841 33 H 0.129 0.871 34 H 0.142 0.858 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.126 0.874 39 H 0.078 0.922 40 H 0.057 0.943 41 H 0.117 0.883 42 H 0.023 0.977 43 H 0.020 0.980 44 H 0.040 0.960 45 H 0.058 0.942 46 H 0.185 0.815 47 H 0.134 0.866 48 H 0.083 0.917 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.397 -16.531 14.269 25.111 hybrid contribution -1.428 0.328 -0.908 1.724 sum 10.968 -16.203 13.361 23.693 Atomic orbital electron populations 1.23307 0.76911 1.05497 1.01822 1.86106 1.22894 1.25972 1.89194 1.18519 0.90008 0.85293 1.02696 1.21189 1.00651 0.91304 1.06710 1.20968 0.95246 0.96890 0.99664 1.20103 0.93184 0.96045 1.01206 1.20389 1.01762 0.91000 0.83115 1.48099 1.19273 1.53093 1.14089 1.22362 0.84942 1.01712 0.99264 1.22323 0.83258 0.77224 0.88950 1.90579 1.26129 1.59505 1.68159 1.20506 0.88226 0.96495 0.90672 0.89169 1.22287 0.97514 0.98368 1.02627 1.43797 1.26214 1.36560 1.24945 1.20308 0.94596 0.88865 0.91002 1.19539 1.26741 0.94702 0.98700 0.91511 1.25808 1.02353 0.95408 1.00785 1.70244 1.42544 1.03728 1.41625 0.85167 0.77812 0.78136 0.79087 1.19204 1.22131 1.21057 1.21126 1.01405 0.89174 1.04841 1.18397 0.88237 0.86880 1.02824 1.86138 1.20815 1.28278 1.89218 1.23376 0.76506 1.05440 1.02471 0.91770 0.92769 0.85970 0.84055 0.87134 0.85779 0.91267 0.92691 0.89335 0.87414 0.92160 0.94326 0.88267 0.97726 0.98045 0.96023 0.94230 0.81508 0.86571 0.91653 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.33 -8.85 10.28 -79.64 -0.82 -9.66 16 3 C 0.08 2.28 6.70 22.57 0.15 2.44 16 4 C -0.18 -5.13 9.04 22.35 0.20 -4.92 16 5 C -0.11 -3.34 9.57 22.27 0.21 -3.13 16 6 C -0.10 -2.66 5.46 -19.86 -0.11 -2.77 16 7 C 0.16 3.68 5.54 85.63 0.47 4.16 16 8 N -0.61 -16.21 2.85 -851.14 -2.43 -18.64 16 9 C 0.06 1.00 9.80 127.77 1.25 2.25 16 10 C 0.50 18.91 6.78 87.66 0.59 19.51 16 11 O -0.57 -26.48 13.18 -3.04 -0.04 -26.52 16 12 C 0.15 6.19 2.31 44.25 0.10 6.29 16 13 H 0.09 3.50 7.53 -2.39 -0.02 3.48 16 14 C -0.15 -4.95 8.85 71.98 0.64 -4.32 16 15 N -0.59 -31.62 2.63 -706.98 -1.86 -33.48 16 16 C 0.20 10.96 7.25 127.77 0.93 11.88 16 17 C -0.27 -15.33 9.58 84.04 0.80 -14.52 16 18 H 0.07 3.72 7.82 -2.91 -0.02 3.70 16 19 C -0.05 -2.81 5.17 84.86 0.44 -2.37 16 20 N -0.94 -57.32 10.61 21.65 0.23 -57.09 16 21 Si 0.97 46.61 29.56 68.60 2.03 48.64 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 23 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 24 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 25 C -0.15 -3.14 8.69 22.35 0.19 -2.95 16 26 C 0.08 2.11 6.70 22.57 0.15 2.26 16 27 O -0.33 -7.77 10.28 -79.71 -0.82 -8.59 16 28 C 0.02 0.20 9.81 113.37 1.11 1.31 16 29 H 0.06 1.04 7.66 -2.39 -0.02 1.02 16 30 H 0.05 1.01 7.66 -2.39 -0.02 0.99 16 31 H 0.12 1.59 8.14 -2.38 -0.02 1.58 16 32 H 0.14 3.56 6.30 -2.91 -0.02 3.54 16 33 H 0.11 3.91 7.41 -2.91 -0.02 3.89 16 34 H 0.12 1.72 7.82 -2.38 -0.02 1.70 16 35 H 0.07 1.91 7.43 -2.38 -0.02 1.89 16 36 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.09 1.53 4.19 -2.39 -0.01 1.52 16 38 H 0.11 0.96 7.88 -2.39 -0.02 0.94 16 39 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.04 1.43 7.30 -2.39 -0.02 1.41 16 41 H 0.10 2.32 5.37 -2.39 -0.01 2.31 16 42 H 0.00 0.27 7.34 -2.39 -0.02 0.25 16 43 H 0.00 0.04 7.32 -2.39 -0.02 0.03 16 44 H 0.02 1.12 6.22 -2.39 -0.01 1.11 16 45 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 46 H 0.17 2.25 6.30 -2.91 -0.02 2.23 16 47 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.06 0.67 7.66 -2.39 -0.02 0.65 16 49 H 0.07 0.63 7.66 -2.39 -0.02 0.62 16 Total: -1.00 -81.28 389.54 5.51 -75.77 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.95 Total: 12.97 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: 8.26 Total: 16.59 kcal Atomic # 7 Polarization: -105.15 SS G_CDS: -4.06 Total: -109.20 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -1.68 Total: -44.77 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -81.28 5.51 -75.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972176.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.494 kcal (2) G-P(sol) polarization free energy of solvation -81.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds