Wall clock time and date at job start Sat Apr 11 2020 04:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36006 * 116.99338 * 2 1 4 4 C 1.38561 * 120.07314 * 0.02562 * 3 2 1 5 5 C 1.38245 * 119.99623 * 179.70355 * 4 3 2 6 6 C 1.38256 * 120.14520 * 0.54940 * 5 4 3 7 7 C 1.50697 * 119.92521 * 179.72478 * 6 5 4 8 8 N 1.46502 * 109.47288 * 269.72722 * 7 6 5 9 9 C 1.46500 * 119.99841 * 270.00226 * 8 7 6 10 10 C 1.34776 * 120.00064 * 89.99932 * 8 7 6 11 11 O 1.21280 * 120.00149 * 5.39082 * 10 8 7 12 12 C 1.50697 * 119.99773 * 185.39471 * 10 8 7 13 13 H 1.08995 * 109.47455 * 317.02746 * 12 10 8 14 14 C 1.52998 * 109.47375 * 77.02983 * 12 10 8 15 15 N 1.46504 * 109.47024 * 197.02869 * 12 10 8 16 16 C 1.46507 * 119.99578 * 299.99873 * 15 12 10 17 17 C 1.36927 * 120.00421 * 120.00123 * 15 12 10 18 18 H 1.08006 * 119.99635 * 344.68697 * 17 15 12 19 19 C 1.38806 * 120.00420 * 164.68983 * 17 15 12 20 20 N 1.31617 * 120.00164 * 324.23433 * 19 17 15 21 21 Si 1.86805 * 120.00088 * 144.50995 * 19 17 15 22 22 H 1.48496 * 109.47095 * 179.72909 * 21 19 17 23 23 H 1.48505 * 109.46815 * 299.72180 * 21 19 17 24 24 H 1.48493 * 109.47534 * 59.72123 * 21 19 17 25 25 C 1.38237 * 120.14290 * 359.44930 * 6 5 4 26 26 C 1.38558 * 120.00495 * 0.27698 * 25 6 5 27 27 O 1.35998 * 120.07526 * 179.97438 * 26 25 6 28 28 C 1.42893 * 117.00032 * 0.02562 * 27 26 25 29 29 H 1.08995 * 109.47731 * 59.99944 * 1 2 3 30 30 H 1.09004 * 109.46326 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47060 * 299.99428 * 1 2 3 32 32 H 1.08001 * 120.00442 * 0.02562 * 4 3 2 33 33 H 1.08000 * 119.92626 * 180.29268 * 5 4 3 34 34 H 1.08995 * 109.46899 * 149.72410 * 7 6 5 35 35 H 1.09001 * 109.47049 * 29.72277 * 7 6 5 36 36 H 1.08994 * 109.47154 * 264.36518 * 9 8 7 37 37 H 1.09000 * 109.46912 * 24.36644 * 9 8 7 38 38 H 1.08999 * 109.47170 * 144.36243 * 9 8 7 39 39 H 1.09000 * 109.47209 * 184.44156 * 14 12 10 40 40 H 1.09004 * 109.46977 * 304.43533 * 14 12 10 41 41 H 1.09000 * 109.47755 * 64.43999 * 14 12 10 42 42 H 1.09000 * 109.47050 * 274.06097 * 16 15 12 43 43 H 1.08999 * 109.47186 * 34.06465 * 16 15 12 44 44 H 1.09005 * 109.46785 * 154.06572 * 16 15 12 45 45 H 0.97003 * 119.99896 * 5.39846 * 20 19 17 46 46 H 1.08008 * 119.99523 * 180.25180 * 25 6 5 47 47 H 1.09001 * 109.47471 * 59.99450 * 28 27 26 48 48 H 1.08996 * 109.47229 * 179.97438 * 28 27 26 49 49 H 1.09005 * 109.47044 * 299.99528 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2931 2.3748 0.0005 5 6 1.9222 3.6058 0.0067 6 6 3.3027 3.6800 0.0009 7 6 3.9833 5.0246 0.0015 8 7 4.2038 5.4609 -1.3796 9 6 5.4460 5.1060 -2.0704 10 6 3.2638 6.1887 -2.0145 11 8 2.2802 6.5656 -1.4135 12 6 3.4351 6.5341 -3.4714 13 1 4.4661 6.8367 -3.6543 14 6 3.1029 5.3108 -4.3281 15 7 2.5337 7.6348 -3.8215 16 6 1.0861 7.4744 -3.6635 17 6 3.0443 8.8132 -4.2964 18 1 4.0964 9.0299 -4.1844 19 6 2.2097 9.7293 -4.9216 20 7 1.2168 9.3074 -5.6756 21 14 2.5004 11.5612 -4.6992 22 1 1.4836 12.3209 -5.4699 23 1 2.3912 11.9084 -3.2594 24 1 3.8572 11.9104 -5.1910 25 6 4.0601 2.5236 0.0004 26 6 3.4359 1.2866 -0.0001 27 8 4.1796 0.1479 -0.0011 28 6 5.6003 0.3010 -0.0011 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 0.2145 2.3196 0.0014 33 1 1.3339 4.5115 0.0119 34 1 4.9414 4.9465 0.5152 35 1 3.3534 5.7505 0.5156 36 1 6.1577 5.9268 -1.9829 37 1 5.8690 4.2085 -1.6191 38 1 5.2353 4.9184 -3.1233 39 1 3.3022 5.5360 -5.3758 40 1 3.7197 4.4688 -4.0137 41 1 2.0502 5.0560 -4.2052 42 1 0.6723 7.0089 -4.5580 43 1 0.8827 6.8435 -2.7983 44 1 0.6262 8.4518 -3.5167 45 1 1.0196 8.3593 -5.7320 46 1 5.1384 2.5843 0.0000 47 1 5.9066 0.8501 0.8893 48 1 6.0716 -0.6818 -0.0015 49 1 5.9064 0.8515 -0.8907 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972177.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:23 Heat of formation + Delta-G solvation = -40.414441 kcal Electronic energy + Delta-G solvation = -30330.019748 eV Core-core repulsion = 26259.927945 eV Total energy + Delta-G solvation = -4070.091803 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.76676 -39.59814 -38.60364 -37.33292 -35.72742 -34.99297 -32.39135 -31.08743 -30.46386 -29.04171 -28.13425 -27.46058 -26.61332 -26.13872 -25.52266 -23.53605 -22.29872 -21.87493 -20.82400 -18.78575 -18.41132 -17.49825 -17.25876 -16.88272 -16.29684 -16.16736 -15.71539 -15.44059 -15.38589 -14.90162 -14.67645 -14.33085 -14.04963 -13.69715 -13.60197 -13.41214 -13.27155 -12.86185 -12.77640 -12.53116 -12.43093 -12.27378 -12.03674 -11.74584 -11.61782 -11.39035 -11.36362 -11.34738 -11.17837 -11.06903 -11.02678 -10.62889 -10.53020 -10.40958 -9.97741 -9.58046 -9.09776 -8.83744 -8.42360 -8.13647 -7.88402 -6.87602 -6.16966 -3.04820 1.12691 1.30948 3.07833 3.09930 3.21034 3.26602 3.51270 3.59098 3.74971 3.75900 4.55668 4.60534 4.69458 4.81562 4.86618 4.90052 4.91969 4.97183 5.08497 5.14384 5.21728 5.24967 5.26964 5.29593 5.31142 5.39925 5.45295 5.49490 5.62847 5.71155 5.79640 5.86895 5.93243 5.99733 6.20256 6.22215 6.40336 6.54713 6.55268 6.69637 6.74245 6.86256 6.89723 7.08946 7.31628 7.41410 7.72053 7.97427 8.59825 8.76058 9.13259 9.91454 10.28685 11.21891 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018331 B = 0.002887 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.073268 B = 9696.075717 C =10382.054374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.309 6.309 3 C 0.098 3.902 4 C -0.173 4.173 5 C -0.090 4.090 6 C -0.097 4.097 7 C 0.156 3.844 8 N -0.623 5.623 9 C 0.079 3.921 10 C 0.502 3.498 11 O -0.526 6.526 12 C 0.163 3.837 13 H 0.084 0.916 14 C -0.156 4.156 15 N -0.578 5.578 16 C 0.128 3.872 17 C -0.374 4.374 18 H 0.061 0.939 19 C -0.017 4.017 20 N -0.905 5.905 21 Si 1.064 2.936 22 H -0.286 1.286 23 H -0.294 1.294 24 H -0.293 1.293 25 C -0.159 4.159 26 C 0.092 3.908 27 O -0.309 6.309 28 C 0.027 3.973 29 H 0.055 0.945 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.047 0.953 41 H 0.053 0.947 42 H 0.000 1.000 43 H 0.045 0.955 44 H 0.051 0.949 45 H 0.272 0.728 46 H 0.132 0.868 47 H 0.053 0.947 48 H 0.098 0.902 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.004 -19.242 12.664 24.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.223 6.223 3 C 0.052 3.948 4 C -0.191 4.191 5 C -0.108 4.108 6 C -0.098 4.098 7 C 0.033 3.967 8 N -0.359 5.359 9 C -0.065 4.065 10 C 0.290 3.710 11 O -0.400 6.400 12 C 0.050 3.950 13 H 0.102 0.898 14 C -0.215 4.215 15 N -0.299 5.299 16 C -0.017 4.017 17 C -0.502 4.502 18 H 0.079 0.921 19 C -0.220 4.220 20 N -0.545 5.545 21 Si 0.894 3.106 22 H -0.212 1.212 23 H -0.221 1.221 24 H -0.220 1.220 25 C -0.178 4.178 26 C 0.047 3.953 27 O -0.223 6.223 28 C -0.068 4.068 29 H 0.074 0.926 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.018 0.982 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.084 0.916 46 H 0.150 0.850 47 H 0.072 0.928 48 H 0.116 0.884 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.951 -17.830 12.457 22.550 hybrid contribution 0.642 -1.322 0.467 1.542 sum 6.593 -19.153 12.925 24.028 Atomic orbital electron populations 1.23060 0.78631 1.03808 1.01383 1.86146 1.20971 1.26046 1.89151 1.18257 0.89136 0.85146 1.02262 1.21099 1.00000 0.91446 1.06595 1.20973 0.94142 0.97420 0.98314 1.20017 0.93748 0.95079 1.00995 1.20205 1.00096 0.91996 0.84438 1.48234 1.19372 1.54934 1.13344 1.21818 0.86207 1.00047 0.98400 1.22794 0.81726 0.75411 0.91084 1.90541 1.29738 1.51835 1.67897 1.20167 0.96561 0.90106 0.88161 0.89767 1.22240 1.01541 0.96819 1.00936 1.43722 1.01121 1.11514 1.73548 1.21140 0.83560 1.00321 0.96658 1.19923 0.95854 0.94429 1.39967 0.92091 1.25670 0.97442 1.04863 0.94058 1.70828 1.35715 1.18706 1.29227 0.83516 0.75465 0.75513 0.76118 1.21201 1.22150 1.22017 1.20902 0.99937 0.90543 1.06467 1.18155 0.88165 0.85955 1.03005 1.86156 1.18478 1.28325 1.89315 1.23038 0.78895 1.03679 1.01189 0.92611 0.88322 0.92739 0.84808 0.84825 0.90382 0.88987 0.92704 0.91823 0.90643 0.91669 0.93392 0.92809 0.98247 0.93668 0.93070 0.91577 0.85009 0.92829 0.88364 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.91 10.28 -34.26 -0.35 -4.26 16 3 C 0.10 1.29 6.70 -39.12 -0.26 1.03 16 4 C -0.17 -2.17 9.04 -39.46 -0.36 -2.53 16 5 C -0.09 -1.23 9.69 -39.57 -0.38 -1.62 16 6 C -0.10 -1.24 5.46 -104.62 -0.57 -1.81 16 7 C 0.16 1.99 5.55 -5.19 -0.03 1.97 16 8 N -0.62 -9.16 2.86 -182.96 -0.52 -9.68 16 9 C 0.08 0.87 9.80 59.85 0.59 1.46 16 10 C 0.50 9.76 6.87 -10.99 -0.08 9.68 16 11 O -0.53 -11.85 13.23 5.56 0.07 -11.78 16 12 C 0.16 3.39 2.29 -69.08 -0.16 3.24 16 13 H 0.08 1.68 6.92 -51.93 -0.36 1.32 16 14 C -0.16 -2.83 8.93 37.16 0.33 -2.50 16 15 N -0.58 -15.01 2.66 -174.81 -0.47 -15.48 16 16 C 0.13 3.33 7.57 59.85 0.45 3.78 16 17 C -0.37 -10.65 9.46 -15.07 -0.14 -10.80 16 18 H 0.06 1.72 7.92 -52.48 -0.42 1.30 16 19 C -0.02 -0.49 4.46 -17.43 -0.08 -0.57 16 20 N -0.90 -27.67 12.81 55.49 0.71 -26.96 16 21 Si 1.06 25.95 30.04 -169.99 -5.11 20.84 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 25 C -0.16 -1.81 8.69 -39.46 -0.34 -2.16 16 26 C 0.09 1.18 6.70 -39.12 -0.26 0.92 16 27 O -0.31 -3.73 10.28 -34.24 -0.35 -4.08 16 28 C 0.03 0.20 9.81 101.05 0.99 1.19 16 29 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.39 7.66 -51.93 -0.40 0.00 16 32 H 0.13 1.41 6.30 -52.49 -0.33 1.08 16 33 H 0.13 2.00 7.86 -52.49 -0.41 1.59 16 34 H 0.08 0.77 8.01 -51.93 -0.42 0.35 16 35 H 0.09 1.33 7.29 -51.93 -0.38 0.96 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.53 8.03 -51.93 -0.42 0.12 16 38 H 0.08 0.86 4.98 -51.93 -0.26 0.60 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.05 0.71 6.39 -51.93 -0.33 0.38 16 41 H 0.05 1.04 7.53 -51.93 -0.39 0.65 16 42 H 0.00 -0.01 7.00 -51.93 -0.36 -0.38 16 43 H 0.04 1.12 5.62 -51.93 -0.29 0.83 16 44 H 0.05 1.45 6.82 -51.93 -0.35 1.09 16 45 H 0.27 8.35 6.03 -40.82 -0.25 8.11 16 46 H 0.13 1.16 6.30 -52.48 -0.33 0.83 16 47 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 48 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 LS Contribution 390.54 15.07 5.89 5.89 Total: -1.00 -35.87 390.54 -6.81 -42.68 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -7.38 Total: 0.34 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 0.69 Total: 2.50 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: -0.28 Total: -52.12 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.63 Total: -20.12 kcal Atomic # 14 Polarization: 25.95 SS G_CDS: -5.11 Total: 20.84 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.87 -6.81 -42.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972177.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.264 kcal (2) G-P(sol) polarization free energy of solvation -35.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds