Wall clock time and date at job start Sat Apr 11 2020 04:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36006 * 116.99338 * 2 1 4 4 C 1.38561 * 120.07314 * 0.02562 * 3 2 1 5 5 C 1.38245 * 119.99623 * 179.70355 * 4 3 2 6 6 C 1.38256 * 120.14520 * 0.54940 * 5 4 3 7 7 C 1.50697 * 119.92521 * 179.72478 * 6 5 4 8 8 N 1.46502 * 109.47288 * 269.72722 * 7 6 5 9 9 C 1.46500 * 119.99841 * 270.00226 * 8 7 6 10 10 C 1.34776 * 120.00064 * 89.99932 * 8 7 6 11 11 O 1.21280 * 120.00149 * 5.39082 * 10 8 7 12 12 C 1.50697 * 119.99773 * 185.39471 * 10 8 7 13 13 H 1.08995 * 109.47455 * 317.02746 * 12 10 8 14 14 C 1.52998 * 109.47375 * 77.02983 * 12 10 8 15 15 N 1.46504 * 109.47024 * 197.02869 * 12 10 8 16 16 C 1.46507 * 119.99578 * 299.99873 * 15 12 10 17 17 C 1.36927 * 120.00421 * 120.00123 * 15 12 10 18 18 H 1.08006 * 119.99635 * 344.68697 * 17 15 12 19 19 C 1.38806 * 120.00420 * 164.68983 * 17 15 12 20 20 N 1.31617 * 120.00164 * 324.23433 * 19 17 15 21 21 Si 1.86805 * 120.00088 * 144.50995 * 19 17 15 22 22 H 1.48496 * 109.47095 * 179.72909 * 21 19 17 23 23 H 1.48505 * 109.46815 * 299.72180 * 21 19 17 24 24 H 1.48493 * 109.47534 * 59.72123 * 21 19 17 25 25 C 1.38237 * 120.14290 * 359.44930 * 6 5 4 26 26 C 1.38558 * 120.00495 * 0.27698 * 25 6 5 27 27 O 1.35998 * 120.07526 * 179.97438 * 26 25 6 28 28 C 1.42893 * 117.00032 * 0.02562 * 27 26 25 29 29 H 1.08995 * 109.47731 * 59.99944 * 1 2 3 30 30 H 1.09004 * 109.46326 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47060 * 299.99428 * 1 2 3 32 32 H 1.08001 * 120.00442 * 0.02562 * 4 3 2 33 33 H 1.08000 * 119.92626 * 180.29268 * 5 4 3 34 34 H 1.08995 * 109.46899 * 149.72410 * 7 6 5 35 35 H 1.09001 * 109.47049 * 29.72277 * 7 6 5 36 36 H 1.08994 * 109.47154 * 264.36518 * 9 8 7 37 37 H 1.09000 * 109.46912 * 24.36644 * 9 8 7 38 38 H 1.08999 * 109.47170 * 144.36243 * 9 8 7 39 39 H 1.09000 * 109.47209 * 184.44156 * 14 12 10 40 40 H 1.09004 * 109.46977 * 304.43533 * 14 12 10 41 41 H 1.09000 * 109.47755 * 64.43999 * 14 12 10 42 42 H 1.09000 * 109.47050 * 274.06097 * 16 15 12 43 43 H 1.08999 * 109.47186 * 34.06465 * 16 15 12 44 44 H 1.09005 * 109.46785 * 154.06572 * 16 15 12 45 45 H 0.97003 * 119.99896 * 5.39846 * 20 19 17 46 46 H 1.08008 * 119.99523 * 180.25180 * 25 6 5 47 47 H 1.09001 * 109.47471 * 59.99450 * 28 27 26 48 48 H 1.08996 * 109.47229 * 179.97438 * 28 27 26 49 49 H 1.09005 * 109.47044 * 299.99528 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2931 2.3748 0.0005 5 6 1.9222 3.6058 0.0067 6 6 3.3027 3.6800 0.0009 7 6 3.9833 5.0246 0.0015 8 7 4.2038 5.4609 -1.3796 9 6 5.4460 5.1060 -2.0704 10 6 3.2638 6.1887 -2.0145 11 8 2.2802 6.5656 -1.4135 12 6 3.4351 6.5341 -3.4714 13 1 4.4661 6.8367 -3.6543 14 6 3.1029 5.3108 -4.3281 15 7 2.5337 7.6348 -3.8215 16 6 1.0861 7.4744 -3.6635 17 6 3.0443 8.8132 -4.2964 18 1 4.0964 9.0299 -4.1844 19 6 2.2097 9.7293 -4.9216 20 7 1.2168 9.3074 -5.6756 21 14 2.5004 11.5612 -4.6992 22 1 1.4836 12.3209 -5.4699 23 1 2.3912 11.9084 -3.2594 24 1 3.8572 11.9104 -5.1910 25 6 4.0601 2.5236 0.0004 26 6 3.4359 1.2866 -0.0001 27 8 4.1796 0.1479 -0.0011 28 6 5.6003 0.3010 -0.0011 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 0.2145 2.3196 0.0014 33 1 1.3339 4.5115 0.0119 34 1 4.9414 4.9465 0.5152 35 1 3.3534 5.7505 0.5156 36 1 6.1577 5.9268 -1.9829 37 1 5.8690 4.2085 -1.6191 38 1 5.2353 4.9184 -3.1233 39 1 3.3022 5.5360 -5.3758 40 1 3.7197 4.4688 -4.0137 41 1 2.0502 5.0560 -4.2052 42 1 0.6723 7.0089 -4.5580 43 1 0.8827 6.8435 -2.7983 44 1 0.6262 8.4518 -3.5167 45 1 1.0196 8.3593 -5.7320 46 1 5.1384 2.5843 0.0000 47 1 5.9066 0.8501 0.8893 48 1 6.0716 -0.6818 -0.0015 49 1 5.9064 0.8515 -0.8907 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972177.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:22 Heat of formation + Delta-G solvation = -63.371443 kcal Electronic energy + Delta-G solvation = -30331.015238 eV Core-core repulsion = 26259.927945 eV Total energy + Delta-G solvation = -4071.087294 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.70470 -40.98100 -39.42989 -38.43299 -37.46307 -36.33045 -34.19001 -32.26026 -31.35210 -30.79243 -28.99927 -28.24277 -28.08430 -27.53460 -26.75577 -25.24495 -23.35281 -23.11890 -22.18297 -20.14268 -19.49497 -19.38854 -18.14453 -17.97870 -17.52353 -17.15417 -17.00816 -16.56161 -16.15683 -16.08266 -15.80701 -15.74365 -15.44543 -15.41113 -15.11505 -14.79220 -14.31528 -14.21862 -13.89923 -13.61013 -13.52177 -13.28262 -13.18912 -13.12035 -13.02165 -12.79691 -12.57178 -12.50108 -12.41038 -12.26840 -12.15120 -12.08686 -12.07167 -11.92807 -11.90110 -11.64053 -10.79675 -10.23015 -9.76780 -9.61976 -8.98184 -8.80493 -8.41861 -5.26571 0.19453 0.33341 1.55150 1.65825 1.73198 1.83698 2.08293 2.30965 2.34718 2.61710 2.75472 3.20097 3.45375 3.65616 3.76139 3.81672 4.00030 4.09727 4.20062 4.29053 4.29967 4.31468 4.34159 4.34600 4.39701 4.45310 4.50906 4.60213 4.63705 4.68398 4.71190 4.73949 4.77957 4.83231 4.84791 4.93783 4.99859 5.05158 5.15635 5.22328 5.24141 5.55670 5.61829 5.66223 5.76589 6.07131 6.35924 6.40904 6.57749 6.97470 7.32839 7.78289 8.17457 8.96640 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018331 B = 0.002887 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.073268 B = 9696.075717 C =10382.054374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.328 6.328 3 C 0.083 3.917 4 C -0.176 4.176 5 C -0.110 4.110 6 C -0.102 4.102 7 C 0.157 3.843 8 N -0.611 5.611 9 C 0.068 3.932 10 C 0.501 3.499 11 O -0.567 6.567 12 C 0.156 3.844 13 H 0.094 0.906 14 C -0.143 4.143 15 N -0.598 5.598 16 C 0.150 3.850 17 C -0.377 4.377 18 H 0.063 0.937 19 C -0.071 4.071 20 N -0.935 5.935 21 Si 1.113 2.887 22 H -0.292 1.292 23 H -0.289 1.289 24 H -0.268 1.268 25 C -0.147 4.147 26 C 0.084 3.916 27 O -0.329 6.329 28 C 0.016 3.984 29 H 0.057 0.943 30 H 0.121 0.879 31 H 0.063 0.937 32 H 0.145 0.855 33 H 0.111 0.889 34 H 0.119 0.881 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.086 0.914 41 H 0.035 0.965 42 H -0.011 1.011 43 H 0.053 0.947 44 H 0.017 0.983 45 H 0.258 0.742 46 H 0.166 0.834 47 H 0.068 0.932 48 H 0.116 0.884 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.000 -20.685 13.684 26.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.242 6.242 3 C 0.037 3.963 4 C -0.195 4.195 5 C -0.129 4.129 6 C -0.103 4.103 7 C 0.035 3.965 8 N -0.345 5.345 9 C -0.074 4.074 10 C 0.289 3.711 11 O -0.445 6.445 12 C 0.044 3.956 13 H 0.112 0.888 14 C -0.202 4.202 15 N -0.320 5.320 16 C 0.005 3.995 17 C -0.505 4.505 18 H 0.081 0.919 19 C -0.269 4.269 20 N -0.577 5.577 21 Si 0.938 3.062 22 H -0.218 1.218 23 H -0.216 1.216 24 H -0.193 1.193 25 C -0.166 4.166 26 C 0.039 3.961 27 O -0.244 6.244 28 C -0.078 4.078 29 H 0.076 0.924 30 H 0.139 0.861 31 H 0.082 0.918 32 H 0.163 0.837 33 H 0.129 0.871 34 H 0.137 0.863 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.121 0.879 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.105 0.895 41 H 0.054 0.946 42 H 0.007 0.993 43 H 0.071 0.929 44 H 0.036 0.964 45 H 0.069 0.931 46 H 0.183 0.817 47 H 0.087 0.913 48 H 0.134 0.866 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.031 -19.345 13.502 25.261 hybrid contribution -0.195 -1.070 0.234 1.113 sum 8.836 -20.416 13.736 26.145 Atomic orbital electron populations 1.23319 0.76823 1.05521 1.01925 1.86120 1.22966 1.25964 1.89132 1.18516 0.89914 0.85358 1.02477 1.21186 1.00744 0.91074 1.06465 1.20938 0.94978 0.96991 0.99983 1.20002 0.93296 0.95536 1.01505 1.20342 1.01767 0.91319 0.83069 1.48103 1.19235 1.53105 1.14081 1.22148 0.84606 1.02325 0.98334 1.22201 0.82227 0.76239 0.90450 1.90528 1.31689 1.53906 1.68415 1.20439 0.95920 0.89617 0.89590 0.88796 1.22081 1.01152 0.96972 0.99978 1.43873 1.01465 1.12669 1.74029 1.20814 0.84110 0.98268 0.96326 1.20211 0.96016 0.95528 1.38746 0.91901 1.27016 0.97257 1.08731 0.93883 1.70951 1.37387 1.17717 1.31606 0.82858 0.76405 0.70888 0.76052 1.21790 1.21640 1.19289 1.21106 1.01347 0.89205 1.04928 1.18392 0.88315 0.86777 1.02646 1.86142 1.20776 1.28285 1.89161 1.23379 0.76533 1.05461 1.02468 0.92448 0.86091 0.91806 0.83710 0.87074 0.86269 0.91300 0.91448 0.87942 0.90855 0.92481 0.89492 0.94559 0.99309 0.92912 0.96377 0.93124 0.81696 0.91309 0.86586 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.41 16 2 O -0.33 -8.01 10.28 -79.75 -0.82 -8.83 16 3 C 0.08 2.12 6.70 22.57 0.15 2.27 16 4 C -0.18 -4.42 9.04 22.35 0.20 -4.22 16 5 C -0.11 -3.04 9.69 22.28 0.22 -2.82 16 6 C -0.10 -2.42 5.46 -19.86 -0.11 -2.52 16 7 C 0.16 3.65 5.55 85.63 0.47 4.13 16 8 N -0.61 -16.45 2.86 -851.16 -2.43 -18.88 16 9 C 0.07 1.21 9.80 127.77 1.25 2.46 16 10 C 0.50 19.15 6.87 87.66 0.60 19.75 16 11 O -0.57 -26.10 13.23 -3.03 -0.04 -26.14 16 12 C 0.16 6.37 2.29 44.24 0.10 6.47 16 13 H 0.09 3.61 6.92 -2.39 -0.02 3.59 16 14 C -0.14 -5.06 8.93 71.98 0.64 -4.41 16 15 N -0.60 -31.60 2.66 -706.98 -1.88 -33.49 16 16 C 0.15 8.15 7.57 127.77 0.97 9.11 16 17 C -0.38 -21.65 9.46 84.03 0.80 -20.85 16 18 H 0.06 3.51 7.92 -2.91 -0.02 3.49 16 19 C -0.07 -4.20 4.46 84.86 0.38 -3.82 16 20 N -0.93 -58.84 12.81 21.65 0.28 -58.56 16 21 Si 1.11 52.75 30.04 68.60 2.06 54.81 16 22 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 23 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 24 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 25 C -0.15 -2.87 8.69 22.35 0.19 -2.67 16 26 C 0.08 1.97 6.70 22.57 0.15 2.13 16 27 O -0.33 -7.14 10.28 -79.66 -0.82 -7.96 16 28 C 0.02 0.17 9.81 113.37 1.11 1.29 16 29 H 0.06 0.88 7.66 -2.39 -0.02 0.86 16 30 H 0.12 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.06 0.88 7.66 -2.39 -0.02 0.86 16 32 H 0.15 3.10 6.30 -2.91 -0.02 3.08 16 33 H 0.11 3.54 7.86 -2.91 -0.02 3.51 16 34 H 0.12 1.81 8.01 -2.39 -0.02 1.79 16 35 H 0.07 1.96 7.29 -2.39 -0.02 1.95 16 36 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.10 1.09 8.03 -2.39 -0.02 1.07 16 38 H 0.07 1.37 4.98 -2.39 -0.01 1.36 16 39 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.09 2.37 6.39 -2.38 -0.02 2.35 16 41 H 0.04 1.40 7.53 -2.39 -0.02 1.38 16 42 H -0.01 -0.61 7.00 -2.39 -0.02 -0.62 16 43 H 0.05 2.74 5.62 -2.39 -0.01 2.73 16 44 H 0.02 1.05 6.82 -2.38 -0.02 1.03 16 45 H 0.26 16.49 6.03 -92.71 -0.56 15.93 16 46 H 0.17 1.99 6.30 -2.91 -0.02 1.97 16 47 H 0.07 0.56 7.66 -2.39 -0.02 0.54 16 48 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.07 0.58 7.66 -2.38 -0.02 0.56 16 Total: -1.00 -81.10 390.54 5.75 -75.34 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 1.16 Total: 16.01 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 8.24 Total: 7.69 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -4.04 Total: -110.93 kcal Atomic # 8 Polarization: -41.24 SS G_CDS: -1.68 Total: -42.92 kcal Atomic # 14 Polarization: 52.75 SS G_CDS: 2.06 Total: 54.81 kcal Total: -81.10 5.75 -75.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972177.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.970 kcal (2) G-P(sol) polarization free energy of solvation -81.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds