Wall clock time and date at job start Sat Apr 11 2020 04:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46505 * 109.47394 * 2 1 4 4 C 1.46499 * 119.99740 * 90.00355 * 3 2 1 5 5 C 1.50704 * 109.47070 * 269.99883 * 4 3 2 6 6 C 1.38246 * 119.92450 * 270.02722 * 5 4 3 7 7 C 1.38243 * 120.14585 * 179.76598 * 6 5 4 8 8 C 1.38566 * 119.99829 * 0.45999 * 7 6 5 9 9 O 1.35999 * 120.07698 * 179.79064 * 8 7 6 10 10 C 1.42905 * 116.99499 * 359.72494 * 9 8 7 11 11 C 1.39158 * 119.85386 * 359.51996 * 8 7 6 12 12 O 1.35993 * 120.07416 * 180.23293 * 11 8 7 13 13 C 1.42899 * 116.99995 * 179.97438 * 12 11 8 14 14 C 1.38243 * 119.92652 * 89.99603 * 5 4 3 15 15 C 1.34772 * 120.00068 * 270.00051 * 3 2 1 16 16 O 1.21281 * 119.99870 * 180.02562 * 15 3 2 17 17 C 1.50707 * 120.00032 * 0.02562 * 15 3 2 18 18 N 1.46498 * 109.46849 * 179.97438 * 17 15 3 19 19 C 1.46500 * 119.99943 * 269.99885 * 18 17 15 20 20 C 1.36941 * 120.00042 * 90.00208 * 18 17 15 21 21 H 1.08006 * 119.99785 * 20.27534 * 20 18 17 22 22 C 1.38806 * 120.00114 * 200.27316 * 20 18 17 23 23 N 1.31624 * 119.99941 * 15.01366 * 22 20 18 24 24 Si 1.86801 * 120.00311 * 195.02044 * 22 20 18 25 25 H 1.48496 * 109.47217 * 84.99603 * 24 22 20 26 26 H 1.48499 * 109.47140 * 205.00382 * 24 22 20 27 27 H 1.48503 * 109.46894 * 325.00096 * 24 22 20 28 28 H 1.09005 * 109.46789 * 299.99821 * 1 2 3 29 29 H 1.09001 * 109.47175 * 59.99582 * 1 2 3 30 30 H 1.08991 * 109.47353 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47039 * 239.99937 * 2 1 3 32 32 H 1.09001 * 109.47175 * 120.00418 * 2 1 3 33 33 H 1.08994 * 109.47124 * 150.00000 * 4 3 2 34 34 H 1.09006 * 109.47258 * 29.99869 * 4 3 2 35 35 H 1.08001 * 119.93237 * 0.02562 * 6 5 4 36 36 H 1.08001 * 120.00650 * 180.23418 * 7 6 5 37 37 H 1.08994 * 109.47087 * 60.00005 * 10 9 8 38 38 H 1.08997 * 109.46588 * 180.02562 * 10 9 8 39 39 H 1.09000 * 109.47064 * 300.00214 * 10 9 8 40 40 H 1.08997 * 109.47228 * 300.00509 * 13 12 11 41 41 H 1.09008 * 109.46939 * 59.99493 * 13 12 11 42 42 H 1.08998 * 109.47459 * 179.97438 * 13 12 11 43 43 H 1.08003 * 119.99815 * 0.03379 * 14 5 4 44 44 H 1.09005 * 109.46998 * 299.99931 * 17 15 3 45 45 H 1.09002 * 109.46996 * 59.99875 * 17 15 3 46 46 H 1.08996 * 109.47104 * 95.10128 * 19 18 17 47 47 H 1.09005 * 109.46740 * 215.10605 * 19 18 17 48 48 H 1.08996 * 109.47266 * 335.10174 * 19 18 17 49 49 H 0.96999 * 119.99807 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 1.2688 5 6 1.0068 2.7822 1.7039 6 6 0.7778 4.0855 1.3035 7 6 -0.3750 4.7399 1.6960 8 6 -1.2993 4.0929 2.5003 9 8 -2.4319 4.7367 2.8908 10 6 -2.6016 6.0820 2.4397 11 6 -1.0690 2.7809 2.9029 12 8 -1.9755 2.1400 3.6884 13 6 -1.6732 0.7944 4.0625 14 6 0.0861 2.1291 2.5019 15 6 2.2430 2.0166 -1.1672 16 8 2.6478 3.1598 -1.1671 17 6 1.9912 1.3064 -2.4723 18 7 2.3082 2.2041 -3.5858 19 6 1.2704 3.0760 -4.1419 20 6 3.5744 2.2283 -4.1067 21 1 4.2407 1.3937 -3.9455 22 6 4.0015 3.3254 -4.8420 23 7 3.3234 4.4527 -4.7964 24 14 5.5385 3.2022 -5.8965 25 1 5.1855 2.6312 -7.2211 26 1 6.1225 4.5551 -6.0802 27 1 6.5292 2.3221 -5.2263 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.0645 2.7984 1.1384 34 1 2.5507 1.3450 2.0284 35 1 1.4989 4.5921 0.6793 36 1 -0.5534 5.7568 1.3788 37 1 -2.6149 6.1008 1.3501 38 1 -3.5428 6.4772 2.8219 39 1 -1.7764 6.6941 2.8037 40 1 -1.5765 0.1812 3.1666 41 1 -0.7364 0.7738 4.6196 42 1 -2.4756 0.4018 4.6871 43 1 0.2676 1.1110 2.8133 44 1 2.6211 0.4186 -2.5303 45 1 0.9431 1.0127 -2.5298 46 1 1.3329 4.0588 -3.6748 47 1 1.4171 3.1748 -5.2175 48 1 0.2893 2.6429 -3.9473 49 1 3.6221 5.2194 -5.3099 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972750.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:26 Heat of formation + Delta-G solvation = -42.357212 kcal Electronic energy + Delta-G solvation = -30449.052419 eV Core-core repulsion = 26378.876371 eV Total energy + Delta-G solvation = -4070.176048 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.64493 -39.22768 -38.48311 -37.06649 -35.44189 -34.85576 -31.81510 -31.01750 -30.37635 -29.90305 -27.99652 -27.35835 -27.00598 -25.78047 -24.93020 -23.09892 -22.17355 -21.78419 -20.99118 -18.64087 -18.35963 -17.15190 -16.82786 -16.72117 -16.20159 -16.06959 -15.69262 -15.32969 -15.03007 -14.77104 -14.59083 -14.55403 -13.88825 -13.48354 -13.40266 -13.34457 -13.18579 -12.90201 -12.73084 -12.43214 -12.26405 -12.11619 -11.92807 -11.60124 -11.44064 -11.35455 -11.28189 -11.16421 -11.03435 -11.01325 -10.80858 -10.69533 -10.58954 -10.29549 -9.96738 -9.83176 -9.00041 -8.65526 -8.42735 -8.20804 -7.74014 -6.72958 -5.64619 -3.08979 1.27865 1.47383 3.19175 3.22528 3.38790 3.46186 3.48647 3.50313 3.60076 3.93032 4.55428 4.70555 4.82866 4.94621 4.98053 4.99669 5.01400 5.08527 5.10355 5.25820 5.30765 5.34359 5.37459 5.40137 5.45345 5.50490 5.55612 5.61038 5.67687 5.74549 5.85263 5.95081 6.05485 6.13155 6.20643 6.28551 6.37220 6.40934 6.71957 6.73256 6.76561 6.98308 7.02856 7.41610 7.54482 7.78719 7.88508 8.02451 8.42359 9.13452 9.27982 9.90057 10.37023 11.39950 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015723 B = 0.003167 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.392894 B = 8838.016285 C = 9820.552998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.112 3.888 3 N -0.625 5.625 4 C 0.156 3.844 5 C -0.093 4.093 6 C -0.087 4.087 7 C -0.172 4.172 8 C 0.095 3.905 9 O -0.311 6.311 10 C 0.027 3.973 11 C 0.089 3.911 12 O -0.310 6.310 13 C 0.028 3.972 14 C -0.159 4.159 15 C 0.475 3.525 16 O -0.503 6.503 17 C 0.135 3.865 18 N -0.573 5.573 19 C 0.165 3.835 20 C -0.258 4.258 21 H 0.069 0.931 22 C 0.008 3.992 23 N -0.895 5.895 24 Si 0.905 3.095 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.280 1.280 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.136 0.864 36 H 0.133 0.867 37 H 0.055 0.945 38 H 0.097 0.903 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.097 0.903 43 H 0.132 0.868 44 H 0.071 0.929 45 H 0.065 0.935 46 H 0.034 0.966 47 H 0.046 0.954 48 H -0.005 1.005 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.714 -6.980 17.654 21.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.012 4.012 3 N -0.363 5.363 4 C 0.032 3.968 5 C -0.094 4.094 6 C -0.105 4.105 7 C -0.191 4.191 8 C 0.050 3.950 9 O -0.224 6.224 10 C -0.069 4.069 11 C 0.044 3.956 12 O -0.224 6.224 13 C -0.068 4.068 14 C -0.178 4.178 15 C 0.261 3.739 16 O -0.374 6.374 17 C 0.002 3.998 18 N -0.293 5.293 19 C 0.020 3.980 20 C -0.387 4.387 21 H 0.087 0.913 22 C -0.192 4.192 23 N -0.539 5.539 24 Si 0.735 3.265 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.206 1.206 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.154 0.846 36 H 0.151 0.849 37 H 0.074 0.926 38 H 0.116 0.884 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.115 0.885 43 H 0.149 0.851 44 H 0.089 0.911 45 H 0.083 0.917 46 H 0.052 0.948 47 H 0.065 0.935 48 H 0.014 0.986 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.770 -6.143 17.646 21.566 hybrid contribution 1.016 0.120 -0.506 1.141 sum -9.755 -6.022 17.140 20.620 Atomic orbital electron populations 1.22360 0.96646 1.01512 1.03051 1.21422 0.93998 0.83209 1.02550 1.48695 1.68494 1.13740 1.05370 1.20188 0.93947 0.96417 0.86229 1.20045 0.97498 0.94383 0.97515 1.21031 0.96882 0.94364 0.98267 1.21109 0.95498 1.01104 1.01402 1.18245 0.88176 0.90237 0.98366 1.86130 1.37734 1.27415 1.71152 1.23044 1.02561 0.81183 1.00072 1.18132 0.90738 0.90210 0.96501 1.86148 1.44035 1.27263 1.64907 1.23022 1.02216 0.81438 1.00098 1.20857 0.94025 1.00211 1.02728 1.23644 0.76307 0.88256 0.85710 1.90669 1.42558 1.17750 1.86443 1.21052 0.99295 0.94449 0.84975 1.43914 1.08904 1.45541 1.30898 1.20832 0.85701 0.93301 0.98161 1.19144 0.90986 1.00444 1.28138 0.91289 1.25007 0.98043 0.94708 1.01406 1.70126 1.40454 1.00942 1.42355 0.86278 0.82882 0.76747 0.80601 1.21431 1.21770 1.20598 0.92211 0.92212 0.92209 0.90230 0.91383 0.89310 0.90843 0.84620 0.84899 0.92604 0.88433 0.92776 0.92794 0.92908 0.88493 0.85068 0.91127 0.91689 0.94753 0.93507 0.98609 0.93841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.92 10.24 37.15 0.38 -1.53 16 2 C 0.11 1.27 5.97 -4.04 -0.02 1.25 16 3 N -0.62 -9.63 2.46 -175.06 -0.43 -10.06 16 4 C 0.16 2.19 5.57 -5.19 -0.03 2.16 16 5 C -0.09 -1.31 5.39 -104.61 -0.56 -1.88 16 6 C -0.09 -1.36 9.69 -39.58 -0.38 -1.74 16 7 C -0.17 -2.46 9.04 -39.46 -0.36 -2.82 16 8 C 0.10 1.38 6.70 -39.12 -0.26 1.11 16 9 O -0.31 -4.26 10.28 -34.24 -0.35 -4.61 16 10 C 0.03 0.25 9.81 101.05 0.99 1.25 16 11 C 0.09 1.23 6.70 -39.12 -0.26 0.97 16 12 O -0.31 -3.98 10.28 -34.22 -0.35 -4.33 16 13 C 0.03 0.22 9.81 101.05 0.99 1.22 16 14 C -0.16 -1.97 6.52 -39.46 -0.26 -2.23 16 15 C 0.48 9.79 7.74 -10.98 -0.09 9.71 16 16 O -0.50 -12.86 15.52 5.56 0.09 -12.77 16 17 C 0.13 2.77 4.74 -5.19 -0.02 2.75 16 18 N -0.57 -14.89 2.42 -182.50 -0.44 -15.33 16 19 C 0.16 4.25 9.02 59.85 0.54 4.79 16 20 C -0.26 -7.29 9.68 -15.06 -0.15 -7.44 16 21 H 0.07 1.89 7.86 -52.48 -0.41 1.48 16 22 C 0.01 0.22 5.06 -17.43 -0.09 0.14 16 23 N -0.90 -27.19 10.66 55.49 0.59 -26.60 16 24 Si 0.90 22.42 29.58 -169.99 -5.03 17.40 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 28 H 0.06 0.67 5.26 -51.93 -0.27 0.39 16 29 H 0.06 0.76 7.22 -51.93 -0.37 0.39 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.88 6.44 -51.93 -0.33 0.55 16 32 H 0.07 0.60 7.89 -51.93 -0.41 0.19 16 33 H 0.09 1.44 7.36 -51.93 -0.38 1.06 16 34 H 0.07 0.80 7.84 -51.93 -0.41 0.40 16 35 H 0.14 2.41 7.57 -52.49 -0.40 2.02 16 36 H 0.13 1.65 6.30 -52.49 -0.33 1.32 16 37 H 0.06 0.52 7.65 -51.93 -0.40 0.12 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.46 7.67 -51.93 -0.40 0.06 16 40 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 41 H 0.05 0.37 7.66 -51.92 -0.40 -0.03 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.13 1.29 5.97 -52.48 -0.31 0.98 16 44 H 0.07 1.33 7.29 -51.93 -0.38 0.95 16 45 H 0.07 1.18 6.90 -51.93 -0.36 0.82 16 46 H 0.03 0.99 7.40 -51.93 -0.38 0.61 16 47 H 0.05 1.27 7.21 -51.93 -0.37 0.89 16 48 H 0.00 -0.10 7.83 -51.93 -0.41 -0.51 16 49 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 393.94 15.07 5.94 5.94 Total: -1.00 -36.24 393.94 -7.10 -43.34 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -7.53 Total: -0.66 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: 0.42 Total: 7.70 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -0.28 Total: -51.99 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.62 Total: -21.71 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.03 Total: 17.40 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.24 -7.10 -43.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972750.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.978 kcal (2) G-P(sol) polarization free energy of solvation -36.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds