Wall clock time and date at job start Sat Apr 11 2020 04:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46505 * 109.47394 * 2 1 4 4 C 1.46499 * 119.99740 * 90.00355 * 3 2 1 5 5 C 1.50704 * 109.47070 * 269.99883 * 4 3 2 6 6 C 1.38246 * 119.92450 * 270.02722 * 5 4 3 7 7 C 1.38243 * 120.14585 * 179.76598 * 6 5 4 8 8 C 1.38566 * 119.99829 * 0.45999 * 7 6 5 9 9 O 1.35999 * 120.07698 * 179.79064 * 8 7 6 10 10 C 1.42905 * 116.99499 * 359.72494 * 9 8 7 11 11 C 1.39158 * 119.85386 * 359.51996 * 8 7 6 12 12 O 1.35993 * 120.07416 * 180.23293 * 11 8 7 13 13 C 1.42899 * 116.99995 * 179.97438 * 12 11 8 14 14 C 1.38243 * 119.92652 * 89.99603 * 5 4 3 15 15 C 1.34772 * 120.00068 * 270.00051 * 3 2 1 16 16 O 1.21281 * 119.99870 * 180.02562 * 15 3 2 17 17 C 1.50707 * 120.00032 * 0.02562 * 15 3 2 18 18 N 1.46498 * 109.46849 * 179.97438 * 17 15 3 19 19 C 1.46500 * 119.99943 * 269.99885 * 18 17 15 20 20 C 1.36941 * 120.00042 * 90.00208 * 18 17 15 21 21 H 1.08006 * 119.99785 * 20.27534 * 20 18 17 22 22 C 1.38806 * 120.00114 * 200.27316 * 20 18 17 23 23 N 1.31624 * 119.99941 * 15.01366 * 22 20 18 24 24 Si 1.86801 * 120.00311 * 195.02044 * 22 20 18 25 25 H 1.48496 * 109.47217 * 84.99603 * 24 22 20 26 26 H 1.48499 * 109.47140 * 205.00382 * 24 22 20 27 27 H 1.48503 * 109.46894 * 325.00096 * 24 22 20 28 28 H 1.09005 * 109.46789 * 299.99821 * 1 2 3 29 29 H 1.09001 * 109.47175 * 59.99582 * 1 2 3 30 30 H 1.08991 * 109.47353 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47039 * 239.99937 * 2 1 3 32 32 H 1.09001 * 109.47175 * 120.00418 * 2 1 3 33 33 H 1.08994 * 109.47124 * 150.00000 * 4 3 2 34 34 H 1.09006 * 109.47258 * 29.99869 * 4 3 2 35 35 H 1.08001 * 119.93237 * 0.02562 * 6 5 4 36 36 H 1.08001 * 120.00650 * 180.23418 * 7 6 5 37 37 H 1.08994 * 109.47087 * 60.00005 * 10 9 8 38 38 H 1.08997 * 109.46588 * 180.02562 * 10 9 8 39 39 H 1.09000 * 109.47064 * 300.00214 * 10 9 8 40 40 H 1.08997 * 109.47228 * 300.00509 * 13 12 11 41 41 H 1.09008 * 109.46939 * 59.99493 * 13 12 11 42 42 H 1.08998 * 109.47459 * 179.97438 * 13 12 11 43 43 H 1.08003 * 119.99815 * 0.03379 * 14 5 4 44 44 H 1.09005 * 109.46998 * 299.99931 * 17 15 3 45 45 H 1.09002 * 109.46996 * 59.99875 * 17 15 3 46 46 H 1.08996 * 109.47104 * 95.10128 * 19 18 17 47 47 H 1.09005 * 109.46740 * 215.10605 * 19 18 17 48 48 H 1.08996 * 109.47266 * 335.10174 * 19 18 17 49 49 H 0.96999 * 119.99807 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 1.2688 5 6 1.0068 2.7822 1.7039 6 6 0.7778 4.0855 1.3035 7 6 -0.3750 4.7399 1.6960 8 6 -1.2993 4.0929 2.5003 9 8 -2.4319 4.7367 2.8908 10 6 -2.6016 6.0820 2.4397 11 6 -1.0690 2.7809 2.9029 12 8 -1.9755 2.1400 3.6884 13 6 -1.6732 0.7944 4.0625 14 6 0.0861 2.1291 2.5019 15 6 2.2430 2.0166 -1.1672 16 8 2.6478 3.1598 -1.1671 17 6 1.9912 1.3064 -2.4723 18 7 2.3082 2.2041 -3.5858 19 6 1.2704 3.0760 -4.1419 20 6 3.5744 2.2283 -4.1067 21 1 4.2407 1.3937 -3.9455 22 6 4.0015 3.3254 -4.8420 23 7 3.3234 4.4527 -4.7964 24 14 5.5385 3.2022 -5.8965 25 1 5.1855 2.6312 -7.2211 26 1 6.1225 4.5551 -6.0802 27 1 6.5292 2.3221 -5.2263 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.0645 2.7984 1.1384 34 1 2.5507 1.3450 2.0284 35 1 1.4989 4.5921 0.6793 36 1 -0.5534 5.7568 1.3788 37 1 -2.6149 6.1008 1.3501 38 1 -3.5428 6.4772 2.8219 39 1 -1.7764 6.6941 2.8037 40 1 -1.5765 0.1812 3.1666 41 1 -0.7364 0.7738 4.6196 42 1 -2.4756 0.4018 4.6871 43 1 0.2676 1.1110 2.8133 44 1 2.6211 0.4186 -2.5303 45 1 0.9431 1.0127 -2.5298 46 1 1.3329 4.0588 -3.6748 47 1 1.4171 3.1748 -5.2175 48 1 0.2893 2.6429 -3.9473 49 1 3.6221 5.2194 -5.3099 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972750.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:25 Heat of formation + Delta-G solvation = -65.737485 kcal Electronic energy + Delta-G solvation = -30450.066264 eV Core-core repulsion = 26378.876371 eV Total energy + Delta-G solvation = -4071.189893 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.68049 -40.64430 -39.41341 -38.26033 -37.05302 -36.48902 -33.39734 -32.55935 -31.43494 -30.92243 -29.39700 -28.25548 -28.05510 -27.86111 -26.22159 -24.24291 -23.40740 -23.13085 -22.34089 -19.99480 -19.42158 -18.76670 -18.15476 -17.98358 -17.44158 -17.17349 -17.01516 -16.50423 -16.26402 -16.14165 -15.76617 -15.46348 -15.41728 -15.19258 -14.77009 -14.58014 -14.41346 -14.30043 -13.76221 -13.73070 -13.52322 -13.20194 -13.05930 -13.02420 -12.81163 -12.71261 -12.56071 -12.43897 -12.33771 -12.12798 -12.07330 -12.05898 -12.05107 -11.94142 -11.85182 -11.63812 -10.80933 -10.45520 -9.71760 -9.49852 -8.87113 -8.74189 -7.79894 -5.27289 0.21942 0.36083 1.45473 1.47975 1.55963 2.00077 2.22694 2.31683 2.36122 2.52588 2.79172 3.35082 3.69731 3.71874 3.80518 3.94867 4.01805 4.17870 4.24144 4.33649 4.34043 4.36624 4.41253 4.46138 4.47118 4.54475 4.57159 4.65534 4.67857 4.70009 4.75461 4.77674 4.79700 4.85274 4.98284 5.06863 5.09737 5.26532 5.27338 5.47235 5.59982 5.62753 5.63747 5.71764 5.84144 6.08108 6.28209 6.59113 6.65001 7.13174 7.58802 7.86970 8.27584 9.24019 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015723 B = 0.003167 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.392894 B = 8838.016285 C = 9820.552998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.102 3.898 3 N -0.613 5.613 4 C 0.157 3.843 5 C -0.096 4.096 6 C -0.112 4.112 7 C -0.178 4.178 8 C 0.082 3.918 9 O -0.326 6.326 10 C 0.019 3.981 11 C 0.086 3.914 12 O -0.328 6.328 13 C 0.015 3.985 14 C -0.143 4.143 15 C 0.474 3.526 16 O -0.566 6.566 17 C 0.132 3.868 18 N -0.593 5.593 19 C 0.182 3.818 20 C -0.262 4.262 21 H 0.077 0.923 22 C -0.055 4.055 23 N -0.934 5.934 24 Si 0.972 3.028 25 H -0.278 1.278 26 H -0.300 1.300 27 H -0.268 1.268 28 H 0.057 0.943 29 H 0.034 0.966 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.058 0.942 34 H 0.119 0.881 35 H 0.101 0.899 36 H 0.140 0.860 37 H 0.054 0.946 38 H 0.123 0.877 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.117 0.883 43 H 0.167 0.833 44 H 0.093 0.907 45 H 0.092 0.908 46 H -0.008 1.008 47 H 0.024 0.976 48 H 0.030 0.970 49 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.402 -10.635 19.628 25.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.020 4.020 3 N -0.348 5.348 4 C 0.034 3.966 5 C -0.098 4.098 6 C -0.131 4.131 7 C -0.196 4.196 8 C 0.037 3.963 9 O -0.240 6.240 10 C -0.075 4.075 11 C 0.041 3.959 12 O -0.242 6.242 13 C -0.079 4.079 14 C -0.162 4.162 15 C 0.261 3.739 16 O -0.442 6.442 17 C 0.001 3.999 18 N -0.313 5.313 19 C 0.037 3.963 20 C -0.393 4.393 21 H 0.095 0.905 22 C -0.250 4.250 23 N -0.580 5.580 24 Si 0.800 3.200 25 H -0.205 1.205 26 H -0.227 1.227 27 H -0.193 1.193 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.126 0.874 33 H 0.076 0.924 34 H 0.137 0.863 35 H 0.119 0.881 36 H 0.158 0.842 37 H 0.073 0.927 38 H 0.142 0.858 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.135 0.865 43 H 0.184 0.816 44 H 0.111 0.889 45 H 0.110 0.890 46 H 0.010 0.990 47 H 0.043 0.957 48 H 0.048 0.952 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -11.488 -9.897 19.685 24.848 hybrid contribution 1.083 1.134 -0.927 1.821 sum -10.405 -8.763 18.759 23.172 Atomic orbital electron populations 1.22312 0.95852 1.03165 1.01717 1.21833 0.94577 0.80612 1.04947 1.48478 1.66785 1.15170 1.04380 1.20292 0.93143 0.96873 0.86306 1.20029 0.97972 0.93740 0.98038 1.20897 0.97137 0.95729 0.99368 1.21143 0.95233 1.01604 1.01656 1.18459 0.88353 0.91051 0.98453 1.86106 1.37382 1.29078 1.71421 1.23305 1.04244 0.79734 1.00260 1.18332 0.91186 0.90135 0.96253 1.86140 1.44079 1.29519 1.64463 1.23393 1.03984 0.79283 1.01234 1.21040 0.92637 1.01306 1.01218 1.23255 0.75978 0.87370 0.87339 1.90669 1.45718 1.20327 1.87520 1.21237 1.01361 0.93640 0.83627 1.44059 1.08166 1.45850 1.33253 1.20494 0.87536 0.91920 0.96325 1.19543 0.91810 1.00349 1.27555 0.90497 1.25856 1.01418 0.94516 1.03236 1.70340 1.42432 1.01591 1.43684 0.85222 0.79424 0.76246 0.79145 1.20453 1.22744 1.19301 0.92435 0.94688 0.89012 0.89569 0.87377 0.92379 0.86322 0.88111 0.84219 0.92692 0.85849 0.92018 0.91480 0.91365 0.86451 0.81562 0.88875 0.88968 0.99010 0.95735 0.95167 0.94678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.00 10.24 71.98 0.74 -2.26 16 2 C 0.10 1.87 5.97 86.38 0.52 2.39 16 3 N -0.61 -17.73 2.46 -826.15 -2.03 -19.76 16 4 C 0.16 4.19 5.57 85.63 0.48 4.67 16 5 C -0.10 -2.65 5.39 -19.86 -0.11 -2.76 16 6 C -0.11 -3.72 9.69 22.27 0.22 -3.51 16 7 C -0.18 -5.29 9.04 22.35 0.20 -5.08 16 8 C 0.08 2.36 6.70 22.57 0.15 2.51 16 9 O -0.33 -8.78 10.28 -79.67 -0.82 -9.60 16 10 C 0.02 0.36 9.81 113.37 1.11 1.47 16 11 C 0.09 2.22 6.70 22.57 0.15 2.37 16 12 O -0.33 -7.57 10.28 -79.61 -0.82 -8.39 16 13 C 0.02 0.18 9.81 113.37 1.11 1.30 16 14 C -0.14 -3.16 6.52 22.35 0.15 -3.01 16 15 C 0.47 19.56 7.74 87.66 0.68 20.24 16 16 O -0.57 -30.35 15.52 -3.03 -0.05 -30.40 16 17 C 0.13 5.28 4.74 85.64 0.41 5.68 16 18 N -0.59 -31.17 2.42 -731.29 -1.77 -32.93 16 19 C 0.18 9.74 9.02 127.77 1.15 10.90 16 20 C -0.26 -15.02 9.68 84.03 0.81 -14.21 16 21 H 0.08 4.17 7.86 -2.91 -0.02 4.15 16 22 C -0.06 -3.27 5.06 84.86 0.43 -2.84 16 23 N -0.93 -59.46 10.66 21.65 0.23 -59.23 16 24 Si 0.97 47.09 29.58 68.60 2.03 49.11 16 25 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 26 H -0.30 -14.86 7.11 99.48 0.71 -14.16 16 27 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 28 H 0.06 1.04 5.26 -2.38 -0.01 1.02 16 29 H 0.03 0.79 7.22 -2.39 -0.02 0.77 16 30 H 0.09 1.05 8.14 -2.39 -0.02 1.04 16 31 H 0.09 1.52 6.44 -2.39 -0.02 1.51 16 32 H 0.11 1.23 7.89 -2.39 -0.02 1.21 16 33 H 0.06 1.94 7.36 -2.39 -0.02 1.92 16 34 H 0.12 2.09 7.84 -2.38 -0.02 2.07 16 35 H 0.10 4.02 7.57 -2.91 -0.02 4.00 16 36 H 0.14 3.73 6.30 -2.91 -0.02 3.72 16 37 H 0.05 1.03 7.65 -2.39 -0.02 1.01 16 38 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.06 1.05 7.67 -2.39 -0.02 1.03 16 40 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 41 H 0.07 0.63 7.66 -2.38 -0.02 0.61 16 42 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.17 2.40 5.97 -2.91 -0.02 2.38 16 44 H 0.09 3.29 7.29 -2.38 -0.02 3.27 16 45 H 0.09 3.16 6.90 -2.39 -0.02 3.14 16 46 H -0.01 -0.52 7.40 -2.39 -0.02 -0.54 16 47 H 0.02 1.37 7.21 -2.38 -0.02 1.35 16 48 H 0.03 1.35 7.83 -2.39 -0.02 1.33 16 49 H 0.24 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -84.76 393.94 5.92 -78.84 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.95 Total: 14.50 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: 8.19 Total: 17.85 kcal Atomic # 7 Polarization: -108.36 SS G_CDS: -3.56 Total: -111.92 kcal Atomic # 8 Polarization: -46.70 SS G_CDS: -1.68 Total: -48.38 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.11 kcal Total: -84.76 5.92 -78.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972750.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.100 kcal (2) G-P(sol) polarization free energy of solvation -84.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds