Wall clock time and date at job start Sat Apr 11 2020 04:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35998 * 117.00357 * 2 1 4 4 C 1.38561 * 120.07194 * 0.02685 * 3 2 1 5 5 C 1.38241 * 119.99590 * 179.70902 * 4 3 2 6 6 C 1.38248 * 120.14893 * 0.53727 * 5 4 3 7 7 C 1.50702 * 119.92920 * 179.73232 * 6 5 4 8 8 N 1.46500 * 109.46732 * 269.72618 * 7 6 5 9 9 C 1.34779 * 119.99669 * 179.97438 * 8 7 6 10 10 O 1.21273 * 120.00126 * 0.02562 * 9 8 7 11 11 C 1.50703 * 119.99595 * 180.02562 * 9 8 7 12 12 H 1.08994 * 109.47502 * 45.06222 * 11 9 8 13 13 C 1.52998 * 109.47237 * 285.06194 * 11 9 8 14 14 N 1.46907 * 109.47047 * 165.06524 * 11 9 8 15 15 C 1.46897 * 111.00219 * 196.11272 * 14 11 9 16 16 C 1.46906 * 110.99877 * 72.15819 * 14 11 9 17 17 C 1.50695 * 109.46932 * 190.00248 * 16 14 11 18 18 H 1.08003 * 119.99984 * 0.02562 * 17 16 14 19 19 C 1.37874 * 120.00112 * 180.02562 * 17 16 14 20 20 N 1.31518 * 119.99681 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00234 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47203 * 59.99565 * 21 19 17 23 23 H 1.48499 * 109.46986 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.46908 * 299.99370 * 21 19 17 25 25 C 1.38244 * 120.14544 * 359.45867 * 6 5 4 26 26 C 1.38568 * 119.99606 * 0.27257 * 25 6 5 27 27 O 1.36003 * 120.06838 * 179.97438 * 26 25 6 28 28 C 1.42896 * 117.00157 * 359.97438 * 27 26 25 29 29 H 1.08990 * 109.47545 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46851 * 299.99983 * 1 2 3 31 31 H 1.08998 * 109.46735 * 59.99423 * 1 2 3 32 32 H 1.08003 * 120.00183 * 359.97438 * 4 3 2 33 33 H 1.08006 * 119.92689 * 180.29586 * 5 4 3 34 34 H 1.08996 * 109.47201 * 149.73157 * 7 6 5 35 35 H 1.08997 * 109.47060 * 29.72150 * 7 6 5 36 36 H 0.97005 * 120.00309 * 0.02562 * 8 7 6 37 37 H 1.09001 * 109.47412 * 180.02562 * 13 11 9 38 38 H 1.08997 * 109.47383 * 300.00372 * 13 11 9 39 39 H 1.09002 * 109.47438 * 60.00228 * 13 11 9 40 40 H 1.09002 * 109.46943 * 54.23186 * 15 14 11 41 41 H 1.09001 * 109.47341 * 174.22774 * 15 14 11 42 42 H 1.09004 * 109.47325 * 294.23535 * 15 14 11 43 43 H 1.09000 * 109.46819 * 310.00220 * 16 14 11 44 44 H 1.09005 * 109.46667 * 70.00286 * 16 14 11 45 45 H 0.97002 * 119.99989 * 180.02562 * 20 19 17 46 46 H 1.07995 * 120.00520 * 180.25162 * 25 6 5 47 47 H 1.09004 * 109.47087 * 59.99804 * 28 27 26 48 48 H 1.08997 * 109.46729 * 180.02562 * 28 27 26 49 49 H 1.09003 * 109.46929 * 300.00115 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2934 2.3748 0.0006 5 6 1.9227 3.6056 0.0066 6 6 3.3031 3.6797 0.0010 7 6 3.9840 5.0241 0.0015 8 7 4.2046 5.4603 -1.3795 9 6 4.8028 6.6428 -1.6253 10 8 5.1588 7.3455 -0.7033 11 6 5.0292 7.0917 -3.0460 12 1 4.1257 6.9179 -3.6304 13 6 6.1891 6.2995 -3.6525 14 7 5.3540 8.5243 -3.0610 15 6 5.2075 9.0833 -4.4115 16 6 6.7051 8.7633 -2.5361 17 6 6.9119 10.2425 -2.3362 18 1 6.1189 10.9358 -2.5749 19 6 8.1136 10.7110 -1.8488 20 7 9.0791 9.8667 -1.5577 21 14 8.3697 12.5446 -1.6003 22 1 7.3659 13.0582 -0.6341 23 1 9.7355 12.7861 -1.0698 24 1 8.2113 13.2469 -2.8992 25 6 4.0605 2.5231 0.0005 26 6 3.4360 1.2862 0.0000 27 8 4.1796 0.1474 -0.0010 28 6 5.6003 0.3003 -0.0021 29 1 -0.3634 -1.0275 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 0.2147 2.3197 0.0006 33 1 1.3345 4.5115 0.0119 34 1 4.9421 4.9460 0.5152 35 1 3.3541 5.7501 0.5156 36 1 3.9195 4.8984 -2.1171 37 1 6.3531 6.6244 -4.6800 38 1 7.0926 6.4732 -3.0682 39 1 5.9481 5.2365 -3.6415 40 1 4.2086 8.8643 -4.7890 41 1 5.3537 10.1629 -4.3758 42 1 5.9512 8.6375 -5.0720 43 1 6.8207 8.2481 -1.5825 44 1 7.4422 8.3858 -3.2448 45 1 9.9243 10.1962 -1.2144 46 1 5.1387 2.5837 0.0001 47 1 5.9073 0.8498 0.8878 48 1 6.0715 -0.6825 -0.0033 49 1 5.9058 0.8505 -0.8922 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078646620.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:30 Heat of formation + Delta-G solvation = -67.477791 kcal Electronic energy + Delta-G solvation = -29040.402896 eV Core-core repulsion = 24969.137538 eV Total energy + Delta-G solvation = -4071.265358 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.90528 -39.53595 -38.73857 -37.62779 -36.34850 -34.28550 -32.56311 -31.23206 -30.64957 -29.93974 -27.97260 -27.54265 -27.14512 -25.78716 -24.95128 -23.31887 -22.48882 -21.65982 -20.79295 -19.29530 -18.70764 -17.41513 -17.05346 -16.59228 -16.38200 -16.35616 -15.69902 -15.53477 -15.05490 -14.95430 -14.75849 -14.48338 -14.24659 -14.04162 -13.77664 -13.57993 -13.37061 -12.94145 -12.73877 -12.57929 -12.31380 -12.20859 -11.95194 -11.92088 -11.71016 -11.50127 -11.46730 -11.40556 -11.24442 -11.15070 -10.91024 -10.80670 -10.49294 -10.31191 -9.77408 -9.33539 -9.06072 -8.84574 -8.72918 -8.25257 -8.08099 -7.15274 -5.88324 -3.86961 0.92595 1.08330 2.92855 2.98493 3.20851 3.22636 3.41673 3.45209 3.49002 3.71604 4.41774 4.46646 4.53870 4.63514 4.78277 4.80451 4.86227 4.93140 4.99979 5.05605 5.07437 5.14215 5.20918 5.26655 5.28652 5.47535 5.49347 5.52810 5.57873 5.75520 5.84979 5.93458 5.95971 6.05602 6.11535 6.31200 6.35792 6.36647 6.55988 6.67006 6.72471 6.75369 7.25841 7.42303 7.44999 7.80750 7.93182 8.28269 8.32066 8.65914 8.81541 9.18834 9.74474 11.23111 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019973 B = 0.002191 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.541614 B =12779.041050 C =13123.724275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.308 6.308 3 C 0.101 3.899 4 C -0.174 4.174 5 C -0.096 4.096 6 C -0.097 4.097 7 C 0.166 3.834 8 N -0.739 5.739 9 C 0.516 3.484 10 O -0.496 6.496 11 C 0.067 3.933 12 H 0.086 0.914 13 C -0.178 4.178 14 N -0.522 5.522 15 C 0.039 3.961 16 C 0.188 3.812 17 C -0.499 4.499 18 H 0.059 0.941 19 C 0.053 3.947 20 N -0.900 5.900 21 Si 0.896 3.104 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.279 1.279 25 C -0.153 4.153 26 C 0.097 3.903 27 O -0.308 6.308 28 C 0.025 3.975 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.136 0.864 33 H 0.131 0.869 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.395 0.605 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.051 0.949 40 H 0.043 0.957 41 H 0.076 0.924 42 H 0.015 0.985 43 H 0.054 0.946 44 H -0.011 1.011 45 H 0.259 0.741 46 H 0.139 0.861 47 H 0.056 0.944 48 H 0.100 0.900 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.703 -22.356 0.482 27.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.221 6.221 3 C 0.056 3.944 4 C -0.193 4.193 5 C -0.115 4.115 6 C -0.098 4.098 7 C 0.042 3.958 8 N -0.394 5.394 9 C 0.302 3.698 10 O -0.368 6.368 11 C -0.046 4.046 12 H 0.104 0.896 13 C -0.237 4.237 14 N -0.246 5.246 15 C -0.110 4.110 16 C 0.063 3.937 17 C -0.538 4.538 18 H 0.078 0.922 19 C -0.147 4.147 20 N -0.540 5.540 21 Si 0.724 3.276 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.204 1.204 25 C -0.173 4.173 26 C 0.052 3.948 27 O -0.222 6.222 28 C -0.070 4.070 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.154 0.846 33 H 0.149 0.851 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.229 0.771 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.095 0.905 42 H 0.033 0.967 43 H 0.072 0.928 44 H 0.007 0.993 45 H 0.069 0.931 46 H 0.156 0.844 47 H 0.075 0.925 48 H 0.119 0.881 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.535 -21.937 1.570 26.926 hybrid contribution 0.626 0.529 -0.700 1.078 sum -14.908 -21.408 0.870 26.102 Atomic orbital electron populations 1.23072 0.78547 1.03984 1.01300 1.86173 1.21030 1.25968 1.88963 1.18292 0.89151 0.85248 1.01737 1.21060 1.00006 0.91359 1.06889 1.20844 0.93752 0.97299 0.99634 1.19655 0.93472 0.94386 1.02286 1.20044 1.00096 0.91036 0.84589 1.46115 1.63987 1.21807 1.07508 1.20762 0.76956 0.80077 0.92045 1.90768 1.47370 1.52721 1.45902 1.21535 0.98699 0.92130 0.92251 0.89577 1.22361 1.00378 0.99028 1.01919 1.62129 1.33262 1.08017 1.21221 1.22240 0.98016 1.01655 0.89082 1.19953 0.80662 0.97463 0.95621 1.21110 0.98468 0.91997 1.42223 0.92248 1.24949 0.96097 0.97753 0.95905 1.69954 1.04765 1.33960 1.45369 0.86594 0.76982 0.85604 0.78379 1.20250 1.21483 1.20447 1.21055 1.00653 0.90418 1.05124 1.18216 0.88241 0.86118 1.02267 1.86161 1.18827 1.28132 1.89048 1.23104 0.78380 1.03957 1.01600 0.88231 0.92659 0.92644 0.84620 0.85115 0.90864 0.90616 0.77131 0.91814 0.90718 0.92947 0.93815 0.90541 0.96671 0.92761 0.99301 0.93131 0.84376 0.92502 0.88146 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.18 10.28 -34.23 -0.35 -3.53 16 3 C 0.10 1.07 6.70 -39.12 -0.26 0.81 16 4 C -0.17 -1.53 9.04 -39.46 -0.36 -1.89 16 5 C -0.10 -0.89 9.69 -39.58 -0.38 -1.27 16 6 C -0.10 -1.00 5.25 -104.62 -0.55 -1.55 16 7 C 0.17 2.05 5.80 -5.19 -0.03 2.02 16 8 N -0.74 -9.84 5.55 -61.47 -0.34 -10.18 16 9 C 0.52 9.48 6.94 -10.98 -0.08 9.41 16 10 O -0.50 -11.83 14.33 5.56 0.08 -11.75 16 11 C 0.07 1.18 2.70 -68.86 -0.19 1.00 16 12 H 0.09 1.25 7.87 -51.93 -0.41 0.84 16 13 C -0.18 -2.88 8.32 37.16 0.31 -2.57 16 14 N -0.52 -11.67 4.45 -237.72 -1.06 -12.73 16 15 C 0.04 0.75 9.10 60.06 0.55 1.29 16 16 C 0.19 5.10 3.22 -4.97 -0.02 5.08 16 17 C -0.50 -14.77 8.54 -34.44 -0.29 -15.06 16 18 H 0.06 1.74 7.10 -52.48 -0.37 1.36 16 19 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 20 N -0.90 -27.90 13.29 55.43 0.74 -27.16 16 21 Si 0.90 22.64 29.54 -169.99 -5.02 17.62 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 C -0.15 -1.57 8.69 -39.46 -0.34 -1.91 16 26 C 0.10 1.08 6.70 -39.12 -0.26 0.81 16 27 O -0.31 -3.42 10.28 -34.25 -0.35 -3.77 16 28 C 0.02 0.18 9.81 101.05 0.99 1.18 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 31 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 32 H 0.14 0.85 6.30 -52.48 -0.33 0.52 16 33 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 34 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 35 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 36 H 0.40 4.20 8.46 -40.82 -0.35 3.85 16 37 H 0.06 0.99 7.07 -51.93 -0.37 0.63 16 38 H 0.07 1.46 6.53 -51.93 -0.34 1.13 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.04 0.69 7.96 -51.93 -0.41 0.28 16 41 H 0.08 1.59 6.91 -51.93 -0.36 1.23 16 42 H 0.01 0.28 7.10 -51.93 -0.37 -0.09 16 43 H 0.05 1.65 5.89 -51.93 -0.31 1.34 16 44 H -0.01 -0.30 6.84 -51.93 -0.36 -0.66 16 45 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 46 H 0.14 1.27 6.30 -52.49 -0.33 0.94 16 47 H 0.06 0.38 7.66 -51.93 -0.40 -0.01 16 48 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 LS Contribution 396.74 15.07 5.98 5.98 Total: -1.00 -37.00 396.74 -7.90 -44.90 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -7.55 Total: 0.64 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -0.02 Total: -0.02 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.66 Total: -50.07 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.62 Total: -19.05 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.00 -7.90 -44.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078646620.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.574 kcal (2) G-P(sol) polarization free energy of solvation -37.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds