Wall clock time and date at job start Sat Apr 11 2020 04:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35998 * 117.00357 * 2 1 4 4 C 1.38561 * 120.07194 * 0.02685 * 3 2 1 5 5 C 1.38241 * 119.99590 * 179.70902 * 4 3 2 6 6 C 1.38248 * 120.14893 * 0.53727 * 5 4 3 7 7 C 1.50702 * 119.92920 * 179.73232 * 6 5 4 8 8 N 1.46500 * 109.46732 * 269.72618 * 7 6 5 9 9 C 1.34779 * 119.99669 * 179.97438 * 8 7 6 10 10 O 1.21273 * 120.00126 * 0.02562 * 9 8 7 11 11 C 1.50703 * 119.99595 * 180.02562 * 9 8 7 12 12 H 1.08994 * 109.47502 * 45.06222 * 11 9 8 13 13 C 1.52998 * 109.47237 * 285.06194 * 11 9 8 14 14 N 1.46907 * 109.47047 * 165.06524 * 11 9 8 15 15 C 1.46897 * 111.00219 * 196.11272 * 14 11 9 16 16 C 1.46906 * 110.99877 * 72.15819 * 14 11 9 17 17 C 1.50695 * 109.46932 * 190.00248 * 16 14 11 18 18 H 1.08003 * 119.99984 * 0.02562 * 17 16 14 19 19 C 1.37874 * 120.00112 * 180.02562 * 17 16 14 20 20 N 1.31518 * 119.99681 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00234 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47203 * 59.99565 * 21 19 17 23 23 H 1.48499 * 109.46986 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.46908 * 299.99370 * 21 19 17 25 25 C 1.38244 * 120.14544 * 359.45867 * 6 5 4 26 26 C 1.38568 * 119.99606 * 0.27257 * 25 6 5 27 27 O 1.36003 * 120.06838 * 179.97438 * 26 25 6 28 28 C 1.42896 * 117.00157 * 359.97438 * 27 26 25 29 29 H 1.08990 * 109.47545 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46851 * 299.99983 * 1 2 3 31 31 H 1.08998 * 109.46735 * 59.99423 * 1 2 3 32 32 H 1.08003 * 120.00183 * 359.97438 * 4 3 2 33 33 H 1.08006 * 119.92689 * 180.29586 * 5 4 3 34 34 H 1.08996 * 109.47201 * 149.73157 * 7 6 5 35 35 H 1.08997 * 109.47060 * 29.72150 * 7 6 5 36 36 H 0.97005 * 120.00309 * 0.02562 * 8 7 6 37 37 H 1.09001 * 109.47412 * 180.02562 * 13 11 9 38 38 H 1.08997 * 109.47383 * 300.00372 * 13 11 9 39 39 H 1.09002 * 109.47438 * 60.00228 * 13 11 9 40 40 H 1.09002 * 109.46943 * 54.23186 * 15 14 11 41 41 H 1.09001 * 109.47341 * 174.22774 * 15 14 11 42 42 H 1.09004 * 109.47325 * 294.23535 * 15 14 11 43 43 H 1.09000 * 109.46819 * 310.00220 * 16 14 11 44 44 H 1.09005 * 109.46667 * 70.00286 * 16 14 11 45 45 H 0.97002 * 119.99989 * 180.02562 * 20 19 17 46 46 H 1.07995 * 120.00520 * 180.25162 * 25 6 5 47 47 H 1.09004 * 109.47087 * 59.99804 * 28 27 26 48 48 H 1.08997 * 109.46729 * 180.02562 * 28 27 26 49 49 H 1.09003 * 109.46929 * 300.00115 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2934 2.3748 0.0006 5 6 1.9227 3.6056 0.0066 6 6 3.3031 3.6797 0.0010 7 6 3.9840 5.0241 0.0015 8 7 4.2046 5.4603 -1.3795 9 6 4.8028 6.6428 -1.6253 10 8 5.1588 7.3455 -0.7033 11 6 5.0292 7.0917 -3.0460 12 1 4.1257 6.9179 -3.6304 13 6 6.1891 6.2995 -3.6525 14 7 5.3540 8.5243 -3.0610 15 6 5.2075 9.0833 -4.4115 16 6 6.7051 8.7633 -2.5361 17 6 6.9119 10.2425 -2.3362 18 1 6.1189 10.9358 -2.5749 19 6 8.1136 10.7110 -1.8488 20 7 9.0791 9.8667 -1.5577 21 14 8.3697 12.5446 -1.6003 22 1 7.3659 13.0582 -0.6341 23 1 9.7355 12.7861 -1.0698 24 1 8.2113 13.2469 -2.8992 25 6 4.0605 2.5231 0.0005 26 6 3.4360 1.2862 0.0000 27 8 4.1796 0.1474 -0.0010 28 6 5.6003 0.3003 -0.0021 29 1 -0.3634 -1.0275 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 0.2147 2.3197 0.0006 33 1 1.3345 4.5115 0.0119 34 1 4.9421 4.9460 0.5152 35 1 3.3541 5.7501 0.5156 36 1 3.9195 4.8984 -2.1171 37 1 6.3531 6.6244 -4.6800 38 1 7.0926 6.4732 -3.0682 39 1 5.9481 5.2365 -3.6415 40 1 4.2086 8.8643 -4.7890 41 1 5.3537 10.1629 -4.3758 42 1 5.9512 8.6375 -5.0720 43 1 6.8207 8.2481 -1.5825 44 1 7.4422 8.3858 -3.2448 45 1 9.9243 10.1962 -1.2144 46 1 5.1387 2.5837 0.0001 47 1 5.9073 0.8498 0.8878 48 1 6.0715 -0.6825 -0.0033 49 1 5.9058 0.8505 -0.8922 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078646620.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:29 Heat of formation + Delta-G solvation = -95.335127 kcal Electronic energy + Delta-G solvation = -29041.610881 eV Core-core repulsion = 24969.137538 eV Total energy + Delta-G solvation = -4072.473343 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.65960 -40.95239 -39.42891 -38.60019 -37.83275 -35.52864 -34.73340 -32.41757 -31.37138 -31.18494 -29.18233 -28.70022 -28.08622 -26.86773 -26.45604 -25.04577 -23.19767 -22.72841 -22.19122 -20.73441 -19.45845 -18.59381 -18.30842 -17.84012 -17.71448 -17.16002 -16.96871 -16.57863 -16.14887 -16.12277 -15.73556 -15.66144 -15.47040 -15.41939 -15.21533 -14.75281 -14.48213 -14.29737 -13.97662 -13.65902 -13.53860 -13.45443 -13.12777 -12.99458 -12.97021 -12.87250 -12.75204 -12.59541 -12.29362 -12.19186 -12.15485 -12.08457 -12.06582 -11.95427 -11.73272 -11.31903 -10.65412 -10.41810 -10.04096 -9.75852 -8.92600 -8.83065 -8.14866 -6.22553 0.15991 0.32962 1.38438 1.43770 1.50762 1.78924 2.17672 2.32674 2.33920 2.42883 2.75368 3.17550 3.46053 3.57489 3.77943 3.92469 4.02611 4.07673 4.13545 4.19489 4.29616 4.34227 4.36934 4.43701 4.44197 4.54235 4.58276 4.62928 4.67894 4.72556 4.73101 4.77826 4.79347 4.89348 5.05058 5.11195 5.16429 5.22286 5.32979 5.42594 5.53346 5.55999 5.63498 5.67652 6.07608 6.14192 6.43616 6.54884 6.57619 6.77760 6.92950 7.44264 7.45118 8.96371 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019973 B = 0.002191 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.541614 B =12779.041050 C =13123.724275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.331 6.331 3 C 0.092 3.908 4 C -0.168 4.168 5 C -0.093 4.093 6 C -0.102 4.102 7 C 0.170 3.830 8 N -0.713 5.713 9 C 0.514 3.486 10 O -0.562 6.562 11 C 0.063 3.937 12 H 0.132 0.868 13 C -0.168 4.168 14 N -0.542 5.542 15 C 0.041 3.959 16 C 0.212 3.788 17 C -0.520 4.520 18 H 0.057 0.943 19 C -0.004 4.004 20 N -0.936 5.936 21 Si 0.968 3.032 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.263 1.263 25 C -0.154 4.154 26 C 0.078 3.922 27 O -0.328 6.328 28 C 0.019 3.981 29 H 0.115 0.885 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.164 0.836 33 H 0.146 0.854 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.413 0.587 37 H 0.072 0.928 38 H 0.030 0.970 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.054 0.946 42 H 0.019 0.981 43 H 0.015 0.985 44 H -0.034 1.034 45 H 0.261 0.739 46 H 0.142 0.858 47 H 0.060 0.940 48 H 0.118 0.882 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.998 -22.933 -0.690 29.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.245 6.245 3 C 0.046 3.954 4 C -0.186 4.186 5 C -0.111 4.111 6 C -0.103 4.103 7 C 0.046 3.954 8 N -0.368 5.368 9 C 0.301 3.699 10 O -0.438 6.438 11 C -0.049 4.049 12 H 0.150 0.850 13 C -0.226 4.226 14 N -0.266 5.266 15 C -0.107 4.107 16 C 0.086 3.914 17 C -0.559 4.559 18 H 0.076 0.924 19 C -0.201 4.201 20 N -0.577 5.577 21 Si 0.792 3.208 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.187 1.187 25 C -0.173 4.173 26 C 0.033 3.967 27 O -0.242 6.242 28 C -0.076 4.076 29 H 0.133 0.867 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.181 0.819 33 H 0.164 0.836 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.250 0.750 37 H 0.091 0.909 38 H 0.049 0.951 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.073 0.927 42 H 0.037 0.963 43 H 0.033 0.967 44 H -0.016 1.016 45 H 0.070 0.930 46 H 0.159 0.841 47 H 0.078 0.922 48 H 0.137 0.863 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.879 -22.573 0.356 28.798 hybrid contribution 1.236 0.542 -0.333 1.390 sum -16.643 -22.031 0.023 27.611 Atomic orbital electron populations 1.23376 0.76363 1.05567 1.02470 1.86145 1.23401 1.26101 1.88892 1.18575 0.89300 0.86024 1.01506 1.21315 1.01287 0.90368 1.05638 1.21028 0.93243 0.98208 0.98650 1.19426 0.93992 0.92958 1.03921 1.19995 0.99536 0.92187 0.83638 1.45878 1.61885 1.20257 1.08780 1.20995 0.76431 0.80726 0.91768 1.90748 1.50392 1.55074 1.47593 1.21747 1.00897 0.89621 0.92655 0.84997 1.22253 0.97774 1.01409 1.01213 1.61907 1.29963 1.11596 1.23110 1.22256 1.00620 1.00186 0.87664 1.19417 0.82966 0.95632 0.93430 1.21511 0.98656 0.93418 1.42285 0.92436 1.25919 0.95777 1.02999 0.95442 1.70100 1.05258 1.36281 1.46099 0.85466 0.77006 0.79399 0.78891 1.19934 1.20786 1.18736 1.21074 1.00923 0.90296 1.05029 1.18448 0.88888 0.86264 1.03103 1.86130 1.20328 1.28570 1.89220 1.23308 0.76998 1.05296 1.01984 0.86651 0.91480 0.91341 0.81902 0.83601 0.92379 0.91108 0.75035 0.90949 0.95123 0.88909 0.89468 0.92742 0.96265 0.96654 1.01616 0.92996 0.84057 0.92177 0.86344 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.33 -6.38 10.28 -79.66 -0.82 -7.20 16 3 C 0.09 1.81 6.70 22.57 0.15 1.96 16 4 C -0.17 -2.52 9.04 22.35 0.20 -2.32 16 5 C -0.09 -1.50 9.69 22.27 0.22 -1.29 16 6 C -0.10 -1.99 5.25 -19.86 -0.10 -2.09 16 7 C 0.17 4.16 5.80 85.63 0.50 4.66 16 8 N -0.71 -18.18 5.55 -466.80 -2.59 -20.77 16 9 C 0.51 18.89 6.94 87.66 0.61 19.50 16 10 O -0.56 -27.91 14.33 -3.01 -0.04 -27.96 16 11 C 0.06 2.15 2.70 44.17 0.12 2.26 16 12 H 0.13 3.29 7.87 -2.39 -0.02 3.27 16 13 C -0.17 -5.26 8.32 71.98 0.60 -4.66 16 14 N -0.54 -24.22 4.45 -906.02 -4.03 -28.26 16 15 C 0.04 1.51 9.10 127.69 1.16 2.68 16 16 C 0.21 11.97 3.22 85.55 0.28 12.24 16 17 C -0.52 -31.65 8.54 25.60 0.22 -31.44 16 18 H 0.06 3.43 7.10 -2.91 -0.02 3.41 16 19 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 20 N -0.94 -59.90 13.29 21.45 0.28 -59.61 16 21 Si 0.97 47.11 29.54 68.60 2.03 49.13 16 22 H -0.27 -13.12 7.11 99.48 0.71 -12.42 16 23 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 24 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 25 C -0.15 -3.06 8.69 22.35 0.19 -2.86 16 26 C 0.08 1.68 6.70 22.57 0.15 1.84 16 27 O -0.33 -7.18 10.28 -79.72 -0.82 -8.00 16 28 C 0.02 0.27 9.81 113.37 1.11 1.38 16 29 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.45 7.66 -2.38 -0.02 0.44 16 31 H 0.07 0.45 7.66 -2.39 -0.02 0.43 16 32 H 0.16 1.47 6.30 -2.91 -0.02 1.45 16 33 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16 34 H 0.06 1.62 8.08 -2.39 -0.02 1.60 16 35 H 0.07 1.84 8.08 -2.39 -0.02 1.82 16 36 H 0.41 7.67 8.46 -92.70 -0.78 6.88 16 37 H 0.07 2.14 7.07 -2.39 -0.02 2.12 16 38 H 0.03 1.22 6.53 -2.39 -0.02 1.21 16 39 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.09 2.48 7.96 -2.39 -0.02 2.46 16 41 H 0.05 2.25 6.91 -2.39 -0.02 2.23 16 42 H 0.02 0.69 7.10 -2.38 -0.02 0.67 16 43 H 0.02 0.99 5.89 -2.39 -0.01 0.98 16 44 H -0.03 -2.01 6.84 -2.38 -0.02 -2.02 16 45 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 46 H 0.14 2.59 6.30 -2.91 -0.02 2.57 16 47 H 0.06 0.81 7.66 -2.39 -0.02 0.79 16 48 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.06 0.81 7.66 -2.39 -0.02 0.79 16 Total: -1.00 -85.02 396.74 1.16 -83.85 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.18 Total: 15.49 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 6.98 Total: 3.31 kcal Atomic # 7 Polarization: -102.30 SS G_CDS: -6.34 Total: -108.64 kcal Atomic # 8 Polarization: -41.47 SS G_CDS: -1.68 Total: -43.15 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.13 kcal Total: -85.02 1.16 -83.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078646620.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.482 kcal (2) G-P(sol) polarization free energy of solvation -85.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds