Wall clock time and date at job start Sat Apr 11 2020 04:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35989 * 116.99795 * 2 1 4 4 C 1.38562 * 120.07996 * 0.02592 * 3 2 1 5 5 C 1.38243 * 120.00161 * 179.70237 * 4 3 2 6 6 C 1.38247 * 120.14650 * 0.54869 * 5 4 3 7 7 C 1.50699 * 119.92709 * 179.72393 * 6 5 4 8 8 N 1.46499 * 109.47060 * 269.72519 * 7 6 5 9 9 C 1.34777 * 119.99824 * 179.97438 * 8 7 6 10 10 O 1.21278 * 120.00191 * 0.02562 * 9 8 7 11 11 C 1.50703 * 119.99991 * 180.02562 * 9 8 7 12 12 H 1.09002 * 109.47152 * 300.00060 * 11 9 8 13 13 C 1.53000 * 109.46912 * 60.00288 * 11 9 8 14 14 N 1.46896 * 109.46997 * 179.97438 * 11 9 8 15 15 C 1.46903 * 111.00534 * 298.95103 * 14 11 9 16 16 C 1.46904 * 110.99835 * 175.00218 * 14 11 9 17 17 C 1.50700 * 109.46900 * 190.00343 * 16 14 11 18 18 H 1.07999 * 120.00196 * 359.97438 * 17 16 14 19 19 C 1.37881 * 119.99915 * 179.97438 * 17 16 14 20 20 N 1.31513 * 120.00471 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99773 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47297 * 90.00274 * 21 19 17 23 23 H 1.48504 * 109.47093 * 210.00202 * 21 19 17 24 24 H 1.48499 * 109.47284 * 329.99584 * 21 19 17 25 25 C 1.38247 * 120.14801 * 359.44931 * 6 5 4 26 26 C 1.38570 * 119.99484 * 0.27346 * 25 6 5 27 27 O 1.35989 * 120.06889 * 179.97438 * 26 25 6 28 28 C 1.42898 * 117.00310 * 0.02562 * 27 26 25 29 29 H 1.08995 * 109.47122 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46612 * 299.99838 * 1 2 3 31 31 H 1.09001 * 109.47052 * 59.99779 * 1 2 3 32 32 H 1.08003 * 119.99200 * 0.02562 * 4 3 2 33 33 H 1.08006 * 119.92534 * 180.29273 * 5 4 3 34 34 H 1.09004 * 109.47103 * 149.72668 * 7 6 5 35 35 H 1.09002 * 109.46959 * 29.72711 * 7 6 5 36 36 H 0.96998 * 120.00082 * 0.02562 * 8 7 6 37 37 H 1.09004 * 109.46724 * 180.02562 * 13 11 9 38 38 H 1.09001 * 109.47194 * 299.99742 * 13 11 9 39 39 H 1.08992 * 109.47399 * 59.99914 * 13 11 9 40 40 H 1.09007 * 109.46341 * 60.00342 * 15 14 11 41 41 H 1.08998 * 109.47113 * 179.97438 * 15 14 11 42 42 H 1.09001 * 109.47058 * 300.00764 * 15 14 11 43 43 H 1.09001 * 109.46891 * 309.99915 * 16 14 11 44 44 H 1.08997 * 109.47561 * 69.99979 * 16 14 11 45 45 H 0.96994 * 120.00342 * 180.02562 * 20 19 17 46 46 H 1.07992 * 120.00270 * 180.24900 * 25 6 5 47 47 H 1.09000 * 109.47189 * 179.97438 * 28 27 26 48 48 H 1.09004 * 109.47312 * 299.99919 * 28 27 26 49 49 H 1.09002 * 109.47261 * 59.99890 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2933 2.3748 0.0005 5 6 1.9225 3.6057 0.0068 6 6 3.3030 3.6798 0.0010 7 6 3.9838 5.0243 0.0015 8 7 4.2043 5.4605 -1.3795 9 6 4.8024 6.6430 -1.6253 10 8 5.1585 7.3457 -0.7032 11 6 5.0288 7.0920 -3.0460 12 1 5.6588 6.3663 -3.5604 13 6 3.6836 7.2013 -3.7667 14 7 5.6914 8.4031 -3.0454 15 6 4.8580 9.4140 -2.3809 16 6 6.0353 8.8197 -4.4115 17 6 6.9226 10.0365 -4.3571 18 1 7.2027 10.4585 -3.4032 19 6 7.3769 10.6112 -5.5252 20 7 8.1508 11.6735 -5.4779 21 14 6.8930 9.8809 -7.1751 22 1 5.6343 10.5126 -7.6460 23 1 7.9727 10.1320 -8.1634 24 1 6.6875 8.4176 -7.0277 25 6 4.0604 2.5233 0.0005 26 6 3.4360 1.2862 0.0000 27 8 4.1795 0.1476 -0.0010 28 6 5.6003 0.3006 -0.0010 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2147 2.3196 0.0014 33 1 1.3343 4.5115 0.0120 34 1 4.9420 4.9461 0.5153 35 1 3.3539 5.7502 0.5157 36 1 3.9192 4.8986 -2.1170 37 1 3.8474 7.5257 -4.7944 38 1 3.1915 6.2287 -3.7671 39 1 3.0537 7.9270 -3.2523 40 1 4.6764 9.1137 -1.3489 41 1 5.3724 10.3748 -2.3942 42 1 3.9070 9.5031 -2.9061 43 1 6.5605 8.0093 -4.9171 44 1 5.1235 9.0590 -4.9588 45 1 8.4701 12.0779 -6.2997 46 1 5.1386 2.5839 0.0000 47 1 6.0715 -0.6823 -0.0014 48 1 5.9065 0.8511 -0.8906 49 1 5.9067 0.8496 0.8894 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078646622.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:33 Heat of formation + Delta-G solvation = -62.830090 kcal Electronic energy + Delta-G solvation = -28877.193597 eV Core-core repulsion = 24806.129778 eV Total energy + Delta-G solvation = -4071.063819 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.01076 -39.84913 -38.82758 -37.75889 -36.52510 -34.55944 -32.64679 -31.44135 -30.75040 -30.10132 -28.09544 -27.62667 -27.60563 -25.90331 -25.26716 -23.35863 -22.59008 -21.70972 -20.64851 -19.44104 -18.82227 -17.55471 -17.18974 -16.95981 -16.60256 -16.46008 -15.95236 -15.61833 -15.24758 -15.14825 -14.90569 -14.58038 -14.43888 -14.12119 -13.95898 -13.68096 -13.52973 -13.14284 -12.99692 -12.80992 -12.49849 -12.43394 -12.33806 -11.97616 -11.68048 -11.58550 -11.55809 -11.52176 -11.35028 -11.21461 -11.08550 -10.87835 -10.66668 -10.35487 -9.83598 -9.36689 -9.24274 -9.05484 -8.96893 -8.55647 -8.18532 -7.30474 -6.02252 -3.99250 0.81540 0.97552 2.84557 2.89386 2.91058 3.06000 3.28042 3.35716 3.36487 3.54765 4.28418 4.35634 4.42841 4.54411 4.67553 4.73931 4.77030 4.81823 4.84585 4.89344 4.96062 4.98283 5.07792 5.17069 5.18382 5.28752 5.32383 5.37342 5.41614 5.57956 5.70823 5.78344 5.83008 5.94849 6.18274 6.19075 6.23867 6.31238 6.41965 6.48212 6.63817 6.84502 6.91757 7.08536 7.16796 7.51442 7.63305 7.93631 8.05645 8.48607 8.68901 9.08684 9.58741 11.10987 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019199 B = 0.002098 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.034563 B =13344.723688 C =13454.655213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.307 6.307 3 C 0.103 3.897 4 C -0.174 4.174 5 C -0.096 4.096 6 C -0.101 4.101 7 C 0.166 3.834 8 N -0.735 5.735 9 C 0.521 3.479 10 O -0.515 6.515 11 C 0.062 3.938 12 H 0.101 0.899 13 C -0.183 4.183 14 N -0.507 5.507 15 C 0.022 3.978 16 C 0.162 3.838 17 C -0.507 4.507 18 H 0.082 0.918 19 C 0.067 3.933 20 N -0.900 5.900 21 Si 0.875 3.125 22 H -0.278 1.278 23 H -0.286 1.286 24 H -0.267 1.267 25 C -0.153 4.153 26 C 0.098 3.902 27 O -0.307 6.307 28 C 0.025 3.975 29 H 0.100 0.900 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.137 0.863 33 H 0.130 0.870 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.399 0.601 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.009 0.991 43 H 0.027 0.973 44 H -0.013 1.013 45 H 0.263 0.737 46 H 0.139 0.861 47 H 0.101 0.899 48 H 0.057 0.943 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.206 -25.605 11.042 32.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.221 6.221 3 C 0.058 3.942 4 C -0.193 4.193 5 C -0.115 4.115 6 C -0.102 4.102 7 C 0.043 3.957 8 N -0.389 5.389 9 C 0.308 3.692 10 O -0.388 6.388 11 C -0.051 4.051 12 H 0.119 0.881 13 C -0.243 4.243 14 N -0.230 5.230 15 C -0.126 4.126 16 C 0.036 3.964 17 C -0.545 4.545 18 H 0.100 0.900 19 C -0.134 4.134 20 N -0.539 5.539 21 Si 0.702 3.298 22 H -0.204 1.204 23 H -0.212 1.212 24 H -0.192 1.192 25 C -0.172 4.172 26 C 0.052 3.948 27 O -0.221 6.221 28 C -0.070 4.070 29 H 0.118 0.882 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.154 0.846 33 H 0.148 0.852 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.233 0.767 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.027 0.973 43 H 0.045 0.955 44 H 0.005 0.995 45 H 0.073 0.927 46 H 0.156 0.844 47 H 0.119 0.881 48 H 0.076 0.924 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.347 -25.362 11.884 31.937 hybrid contribution -1.124 -0.247 -1.854 2.182 sum -16.471 -25.608 10.030 32.058 Atomic orbital electron populations 1.23087 0.78449 1.04079 1.01319 1.86179 1.21107 1.25904 1.88867 1.18310 0.89175 0.85295 1.01449 1.21069 1.00070 0.91350 1.06830 1.20828 0.93711 0.97305 0.99645 1.19611 0.93479 0.94286 1.02797 1.20064 1.00133 0.91228 0.84318 1.46135 1.63227 1.21716 1.07854 1.20805 0.76291 0.80221 0.91906 1.90639 1.48821 1.53162 1.46227 1.21687 0.95402 0.96472 0.91567 0.88142 1.22430 0.97703 1.01955 1.02165 1.61964 1.41026 0.99424 1.20596 1.22555 0.94232 0.96918 0.98865 1.20241 0.94937 0.96981 0.84229 1.21038 1.28731 1.09670 0.95048 0.89982 1.24905 0.94928 0.94821 0.98778 1.69892 1.34778 1.21346 1.27895 0.86869 0.78354 0.80088 0.84445 1.20392 1.21168 1.19207 1.21042 1.00625 0.90419 1.05147 1.18221 0.88263 0.86144 1.02159 1.86168 1.18855 1.28089 1.88986 1.23111 0.78347 1.04036 1.01551 0.88154 0.92638 0.92594 0.84568 0.85173 0.90735 0.90625 0.76729 0.91055 0.92566 0.91747 0.90646 0.90408 0.97299 0.95518 0.99504 0.92691 0.84358 0.88087 0.92434 0.92536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.96 10.28 -34.21 -0.35 -3.31 16 3 C 0.10 1.01 6.70 -39.12 -0.26 0.74 16 4 C -0.17 -1.37 9.04 -39.46 -0.36 -1.72 16 5 C -0.10 -0.77 9.69 -39.58 -0.38 -1.15 16 6 C -0.10 -0.89 5.25 -104.62 -0.55 -1.44 16 7 C 0.17 1.69 5.80 -5.19 -0.03 1.66 16 8 N -0.73 -8.34 5.44 -61.47 -0.33 -8.67 16 9 C 0.52 8.22 6.87 -10.98 -0.08 8.14 16 10 O -0.51 -10.07 13.90 5.56 0.08 -10.00 16 11 C 0.06 1.03 2.77 -68.87 -0.19 0.84 16 12 H 0.10 1.57 8.03 -51.93 -0.42 1.15 16 13 C -0.18 -2.58 8.40 37.16 0.31 -2.27 16 14 N -0.51 -11.05 4.53 -237.72 -1.08 -12.12 16 15 C 0.02 0.47 8.57 60.07 0.51 0.98 16 16 C 0.16 3.93 3.23 -4.97 -0.02 3.92 16 17 C -0.51 -14.63 9.01 -34.44 -0.31 -14.94 16 18 H 0.08 2.62 7.37 -52.49 -0.39 2.23 16 19 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 20 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 21 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 25 C -0.15 -1.37 8.69 -39.46 -0.34 -1.71 16 26 C 0.10 0.99 6.70 -39.12 -0.26 0.72 16 27 O -0.31 -3.14 10.28 -34.21 -0.35 -3.49 16 28 C 0.02 0.16 9.81 101.05 0.99 1.15 16 29 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.22 7.66 -51.93 -0.40 -0.17 16 31 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 32 H 0.14 0.74 6.30 -52.48 -0.33 0.41 16 33 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 34 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 35 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 36 H 0.40 3.69 7.88 -40.82 -0.32 3.37 16 37 H 0.07 1.09 6.75 -51.93 -0.35 0.74 16 38 H 0.06 0.60 7.56 -51.93 -0.39 0.20 16 39 H 0.06 0.94 6.38 -51.93 -0.33 0.61 16 40 H 0.08 1.55 5.44 -51.93 -0.28 1.27 16 41 H 0.08 1.81 6.76 -51.93 -0.35 1.46 16 42 H 0.01 0.17 6.28 -51.93 -0.33 -0.16 16 43 H 0.03 0.65 7.06 -51.93 -0.37 0.28 16 44 H -0.01 -0.30 6.36 -51.93 -0.33 -0.63 16 45 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 46 H 0.14 1.07 6.30 -52.49 -0.33 0.74 16 47 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 49 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 LS Contribution 390.36 15.07 5.88 5.88 Total: -1.00 -35.65 390.36 -7.50 -43.15 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -7.38 Total: 0.99 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -0.07 Total: -2.10 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -0.64 Total: -47.86 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.63 Total: -16.80 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.65 -7.50 -43.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078646622.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.678 kcal (2) G-P(sol) polarization free energy of solvation -35.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds