Wall clock time and date at job start Sat Apr 11 2020 04:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35989 * 116.99795 * 2 1 4 4 C 1.38562 * 120.07996 * 0.02592 * 3 2 1 5 5 C 1.38243 * 120.00161 * 179.70237 * 4 3 2 6 6 C 1.38247 * 120.14650 * 0.54869 * 5 4 3 7 7 C 1.50699 * 119.92709 * 179.72393 * 6 5 4 8 8 N 1.46499 * 109.47060 * 269.72519 * 7 6 5 9 9 C 1.34777 * 119.99824 * 179.97438 * 8 7 6 10 10 O 1.21278 * 120.00191 * 0.02562 * 9 8 7 11 11 C 1.50703 * 119.99991 * 180.02562 * 9 8 7 12 12 H 1.09002 * 109.47152 * 300.00060 * 11 9 8 13 13 C 1.53000 * 109.46912 * 60.00288 * 11 9 8 14 14 N 1.46896 * 109.46997 * 179.97438 * 11 9 8 15 15 C 1.46903 * 111.00534 * 298.95103 * 14 11 9 16 16 C 1.46904 * 110.99835 * 175.00218 * 14 11 9 17 17 C 1.50700 * 109.46900 * 190.00343 * 16 14 11 18 18 H 1.07999 * 120.00196 * 359.97438 * 17 16 14 19 19 C 1.37881 * 119.99915 * 179.97438 * 17 16 14 20 20 N 1.31513 * 120.00471 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99773 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47297 * 90.00274 * 21 19 17 23 23 H 1.48504 * 109.47093 * 210.00202 * 21 19 17 24 24 H 1.48499 * 109.47284 * 329.99584 * 21 19 17 25 25 C 1.38247 * 120.14801 * 359.44931 * 6 5 4 26 26 C 1.38570 * 119.99484 * 0.27346 * 25 6 5 27 27 O 1.35989 * 120.06889 * 179.97438 * 26 25 6 28 28 C 1.42898 * 117.00310 * 0.02562 * 27 26 25 29 29 H 1.08995 * 109.47122 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46612 * 299.99838 * 1 2 3 31 31 H 1.09001 * 109.47052 * 59.99779 * 1 2 3 32 32 H 1.08003 * 119.99200 * 0.02562 * 4 3 2 33 33 H 1.08006 * 119.92534 * 180.29273 * 5 4 3 34 34 H 1.09004 * 109.47103 * 149.72668 * 7 6 5 35 35 H 1.09002 * 109.46959 * 29.72711 * 7 6 5 36 36 H 0.96998 * 120.00082 * 0.02562 * 8 7 6 37 37 H 1.09004 * 109.46724 * 180.02562 * 13 11 9 38 38 H 1.09001 * 109.47194 * 299.99742 * 13 11 9 39 39 H 1.08992 * 109.47399 * 59.99914 * 13 11 9 40 40 H 1.09007 * 109.46341 * 60.00342 * 15 14 11 41 41 H 1.08998 * 109.47113 * 179.97438 * 15 14 11 42 42 H 1.09001 * 109.47058 * 300.00764 * 15 14 11 43 43 H 1.09001 * 109.46891 * 309.99915 * 16 14 11 44 44 H 1.08997 * 109.47561 * 69.99979 * 16 14 11 45 45 H 0.96994 * 120.00342 * 180.02562 * 20 19 17 46 46 H 1.07992 * 120.00270 * 180.24900 * 25 6 5 47 47 H 1.09000 * 109.47189 * 179.97438 * 28 27 26 48 48 H 1.09004 * 109.47312 * 299.99919 * 28 27 26 49 49 H 1.09002 * 109.47261 * 59.99890 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2933 2.3748 0.0005 5 6 1.9225 3.6057 0.0068 6 6 3.3030 3.6798 0.0010 7 6 3.9838 5.0243 0.0015 8 7 4.2043 5.4605 -1.3795 9 6 4.8024 6.6430 -1.6253 10 8 5.1585 7.3457 -0.7032 11 6 5.0288 7.0920 -3.0460 12 1 5.6588 6.3663 -3.5604 13 6 3.6836 7.2013 -3.7667 14 7 5.6914 8.4031 -3.0454 15 6 4.8580 9.4140 -2.3809 16 6 6.0353 8.8197 -4.4115 17 6 6.9226 10.0365 -4.3571 18 1 7.2027 10.4585 -3.4032 19 6 7.3769 10.6112 -5.5252 20 7 8.1508 11.6735 -5.4779 21 14 6.8930 9.8809 -7.1751 22 1 5.6343 10.5126 -7.6460 23 1 7.9727 10.1320 -8.1634 24 1 6.6875 8.4176 -7.0277 25 6 4.0604 2.5233 0.0005 26 6 3.4360 1.2862 0.0000 27 8 4.1795 0.1476 -0.0010 28 6 5.6003 0.3006 -0.0010 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2147 2.3196 0.0014 33 1 1.3343 4.5115 0.0120 34 1 4.9420 4.9461 0.5153 35 1 3.3539 5.7502 0.5157 36 1 3.9192 4.8986 -2.1170 37 1 3.8474 7.5257 -4.7944 38 1 3.1915 6.2287 -3.7671 39 1 3.0537 7.9270 -3.2523 40 1 4.6764 9.1137 -1.3489 41 1 5.3724 10.3748 -2.3942 42 1 3.9070 9.5031 -2.9061 43 1 6.5605 8.0093 -4.9171 44 1 5.1235 9.0590 -4.9588 45 1 8.4701 12.0779 -6.2997 46 1 5.1386 2.5839 0.0000 47 1 6.0715 -0.6823 -0.0014 48 1 5.9065 0.8511 -0.8906 49 1 5.9067 0.8496 0.8894 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078646622.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:32 Heat of formation + Delta-G solvation = -89.727940 kcal Electronic energy + Delta-G solvation = -28878.359975 eV Core-core repulsion = 24806.129778 eV Total energy + Delta-G solvation = -4072.230197 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.66953 -41.07841 -39.43133 -38.63210 -37.89170 -35.59835 -34.74307 -32.55518 -31.37282 -31.26411 -29.54483 -28.66483 -28.08540 -26.98986 -26.58221 -24.87406 -23.19222 -22.54111 -22.10530 -20.79865 -19.48342 -19.06266 -18.24192 -17.91485 -17.69999 -17.17427 -16.98911 -16.52552 -16.32872 -16.14869 -15.77835 -15.72494 -15.51484 -15.41716 -15.28612 -14.83128 -14.59107 -14.42651 -14.33316 -13.66554 -13.56068 -13.47927 -13.13255 -12.98519 -12.95569 -12.86096 -12.70791 -12.47801 -12.42090 -12.15302 -12.08222 -12.07496 -12.02706 -11.93808 -11.74424 -11.45846 -10.76961 -10.58452 -10.06226 -9.75522 -8.95545 -8.83881 -8.25512 -6.29666 0.16148 0.33345 1.36545 1.39642 1.50341 1.68183 2.12921 2.33742 2.33997 2.37060 2.74279 3.07049 3.30448 3.57582 3.78114 3.85467 4.02607 4.08558 4.12287 4.17869 4.30015 4.34239 4.38414 4.42542 4.42878 4.52828 4.55350 4.58792 4.65434 4.73096 4.74255 4.76844 4.78976 4.84382 4.90494 5.04601 5.05864 5.22692 5.25125 5.25952 5.47815 5.52705 5.55538 5.64305 5.98469 6.08179 6.31249 6.53217 6.58081 6.72441 6.77170 7.31494 7.34267 8.91659 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019199 B = 0.002098 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.034563 B =13344.723688 C =13454.655213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.090 3.910 4 C -0.170 4.170 5 C -0.093 4.093 6 C -0.104 4.104 7 C 0.170 3.830 8 N -0.711 5.711 9 C 0.525 3.475 10 O -0.561 6.561 11 C 0.056 3.944 12 H 0.116 0.884 13 C -0.176 4.176 14 N -0.534 5.534 15 C 0.035 3.965 16 C 0.175 3.825 17 C -0.519 4.519 18 H 0.029 0.971 19 C 0.002 3.998 20 N -0.951 5.951 21 Si 0.953 3.047 22 H -0.266 1.266 23 H -0.284 1.284 24 H -0.240 1.240 25 C -0.153 4.153 26 C 0.077 3.923 27 O -0.330 6.330 28 C 0.018 3.982 29 H 0.114 0.886 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.161 0.839 33 H 0.147 0.853 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.413 0.587 37 H 0.064 0.936 38 H 0.097 0.903 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.039 0.961 42 H 0.026 0.974 43 H 0.035 0.965 44 H -0.001 1.001 45 H 0.266 0.734 46 H 0.145 0.855 47 H 0.116 0.884 48 H 0.062 0.938 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.707 -28.269 9.694 35.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.246 6.246 3 C 0.044 3.956 4 C -0.189 4.189 5 C -0.111 4.111 6 C -0.105 4.105 7 C 0.047 3.953 8 N -0.365 5.365 9 C 0.312 3.688 10 O -0.438 6.438 11 C -0.056 4.056 12 H 0.133 0.867 13 C -0.234 4.234 14 N -0.258 5.258 15 C -0.113 4.113 16 C 0.049 3.951 17 C -0.558 4.558 18 H 0.047 0.953 19 C -0.194 4.194 20 N -0.592 5.592 21 Si 0.776 3.224 22 H -0.191 1.191 23 H -0.209 1.209 24 H -0.163 1.163 25 C -0.172 4.172 26 C 0.032 3.968 27 O -0.244 6.244 28 C -0.076 4.076 29 H 0.133 0.867 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.178 0.822 33 H 0.165 0.835 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.250 0.750 37 H 0.083 0.917 38 H 0.116 0.884 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.058 0.942 42 H 0.045 0.955 43 H 0.053 0.947 44 H 0.016 0.984 45 H 0.075 0.925 46 H 0.163 0.837 47 H 0.135 0.865 48 H 0.081 0.919 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.889 -28.091 10.546 34.933 hybrid contribution -0.355 0.520 -1.289 1.434 sum -18.244 -27.571 9.257 34.332 Atomic orbital electron populations 1.23366 0.76414 1.05525 1.02430 1.86145 1.23355 1.26239 1.88897 1.18619 0.89425 0.85999 1.01547 1.21320 1.01236 0.90540 1.05766 1.21038 0.93411 0.98070 0.98628 1.19459 0.93872 0.93236 1.03919 1.20058 0.99992 0.91995 0.83256 1.45909 1.61304 1.20196 1.09101 1.20628 0.76257 0.80975 0.90965 1.90629 1.51144 1.54873 1.47198 1.21817 0.96974 0.93821 0.92948 0.86677 1.22363 0.95959 1.04200 1.00924 1.61746 1.43220 1.01613 1.19207 1.22358 0.94295 0.95201 0.99458 1.19967 0.94283 0.94921 0.85968 1.21291 1.29723 1.11571 0.93172 0.95280 1.25956 0.94658 0.95113 1.03722 1.70073 1.36488 1.23297 1.29374 0.85631 0.78232 0.80600 0.77957 1.19127 1.20934 1.16324 1.21108 1.01064 0.90187 1.04847 1.18484 0.88831 0.86419 1.03107 1.86132 1.20416 1.28680 1.89210 1.23314 0.76914 1.05286 1.02084 0.86737 0.91452 0.91424 0.82158 0.83528 0.91478 0.90607 0.75049 0.91743 0.88402 0.92363 0.90235 0.94222 0.95539 0.94662 0.98379 0.92474 0.83703 0.86541 0.91919 0.91922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -5.97 10.28 -79.55 -0.82 -6.79 16 3 C 0.09 1.61 6.70 22.57 0.15 1.76 16 4 C -0.17 -2.21 9.04 22.35 0.20 -2.01 16 5 C -0.09 -1.22 9.69 22.27 0.22 -1.00 16 6 C -0.10 -1.61 5.25 -19.86 -0.10 -1.72 16 7 C 0.17 3.15 5.80 85.63 0.50 3.64 16 8 N -0.71 -14.28 5.44 -466.78 -2.54 -16.82 16 9 C 0.53 15.66 6.87 87.66 0.60 16.26 16 10 O -0.56 -21.82 13.90 -3.02 -0.04 -21.86 16 11 C 0.06 1.76 2.77 44.17 0.12 1.88 16 12 H 0.12 3.24 8.03 -2.39 -0.02 3.22 16 13 C -0.18 -4.31 8.40 71.98 0.60 -3.71 16 14 N -0.53 -23.15 4.53 -906.02 -4.10 -27.25 16 15 C 0.03 1.49 8.57 127.69 1.09 2.59 16 16 C 0.18 8.36 3.23 85.56 0.28 8.63 16 17 C -0.52 -30.92 9.01 25.60 0.23 -30.69 16 18 H 0.03 1.98 7.37 -2.91 -0.02 1.96 16 19 C 0.00 0.13 5.47 84.66 0.46 0.59 16 20 N -0.95 -60.76 13.96 21.45 0.30 -60.47 16 21 Si 0.95 43.54 27.47 68.60 1.88 45.42 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 24 H -0.24 -9.84 6.54 99.48 0.65 -9.19 16 25 C -0.15 -2.51 8.69 22.35 0.19 -2.31 16 26 C 0.08 1.47 6.70 22.57 0.15 1.63 16 27 O -0.33 -6.56 10.28 -79.55 -0.82 -7.38 16 28 C 0.02 0.22 9.81 113.37 1.11 1.33 16 29 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.38 7.66 -2.39 -0.02 0.36 16 31 H 0.07 0.38 7.66 -2.39 -0.02 0.37 16 32 H 0.16 1.20 6.30 -2.91 -0.02 1.18 16 33 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 34 H 0.07 1.38 8.08 -2.38 -0.02 1.36 16 35 H 0.08 1.46 8.08 -2.39 -0.02 1.44 16 36 H 0.41 6.11 7.88 -92.71 -0.73 5.38 16 37 H 0.06 1.71 6.75 -2.39 -0.02 1.69 16 38 H 0.10 1.58 7.56 -2.39 -0.02 1.56 16 39 H 0.06 1.51 6.38 -2.39 -0.02 1.50 16 40 H 0.08 3.34 5.44 -2.38 -0.01 3.33 16 41 H 0.04 1.95 6.76 -2.39 -0.02 1.94 16 42 H 0.03 1.01 6.28 -2.39 -0.01 1.00 16 43 H 0.04 1.62 7.06 -2.39 -0.02 1.61 16 44 H 0.00 -0.06 6.36 -2.39 -0.02 -0.08 16 45 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 46 H 0.15 2.06 6.30 -2.91 -0.02 2.04 16 47 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.06 0.67 7.66 -2.38 -0.02 0.65 16 49 H 0.06 0.65 7.66 -2.39 -0.02 0.63 16 Total: -1.00 -81.13 390.36 0.97 -80.16 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.19 Total: 16.86 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 6.92 Total: -1.87 kcal Atomic # 7 Polarization: -98.19 SS G_CDS: -6.34 Total: -104.54 kcal Atomic # 8 Polarization: -34.36 SS G_CDS: -1.68 Total: -36.03 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.88 Total: 45.42 kcal Total: -81.13 0.97 -80.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078646622.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.568 kcal (2) G-P(sol) polarization free energy of solvation -81.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds