Wall clock time and date at job start Sat Apr 11 2020 04:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47241 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47303 * 119.99759 * 9 7 5 12 12 H 1.48495 * 109.47340 * 239.99921 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 N 1.46499 * 109.46992 * 179.97438 * 15 13 3 17 17 C 1.33952 * 122.78595 * 269.70808 * 16 15 13 18 18 O 1.21232 * 125.41406 * 359.96056 * 17 16 15 19 19 C 1.51445 * 109.17634 * 179.84259 * 17 16 15 20 20 C 1.53763 * 103.37279 * 0.38383 * 19 17 16 21 21 C 1.52440 * 110.30238 * 118.42167 * 20 19 17 22 22 C 1.53098 * 109.52656 * 181.11160 * 21 20 19 23 23 C 1.53003 * 109.41758 * 300.88446 * 22 21 20 24 24 C 1.53010 * 109.56680 * 60.41532 * 23 22 21 25 25 C 1.52437 * 110.30625 * 241.14069 * 20 19 17 26 26 C 1.34040 * 122.78111 * 89.99737 * 16 15 13 27 27 O 1.21223 * 125.49213 * 0.02562 * 26 16 15 28 28 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 29 29 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 31 31 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 32 32 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 33 33 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 34 34 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 35 35 H 0.97001 * 119.99961 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 37 37 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 38 38 H 1.09003 * 110.83087 * 241.82390 * 19 17 16 39 39 H 1.09000 * 110.45158 * 118.76685 * 19 17 16 40 40 H 1.09006 * 109.46696 * 301.12859 * 21 20 19 41 41 H 1.08997 * 109.46523 * 61.09356 * 21 20 19 42 42 H 1.09005 * 109.48374 * 180.90105 * 22 21 20 43 43 H 1.08996 * 109.49066 * 60.87019 * 22 21 20 44 44 H 1.09003 * 109.45406 * 300.39254 * 23 22 21 45 45 H 1.08995 * 109.45819 * 180.44561 * 23 22 21 46 46 H 1.09000 * 109.47871 * 179.59792 * 24 23 22 47 47 H 1.09001 * 109.48985 * 59.56829 * 24 23 22 48 48 H 1.09009 * 109.46383 * 298.90164 * 25 20 19 49 49 H 1.09005 * 109.46084 * 58.86342 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9132 2.0955 -3.4175 10 1 6.6009 1.2405 -2.4169 11 1 5.9202 1.4163 -4.7380 12 1 6.6210 3.3964 -3.5262 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 7 2.3100 2.2033 3.5858 17 6 3.5275 2.2681 4.1404 18 8 4.4895 1.6125 3.8020 19 6 3.5123 3.2927 5.2556 20 6 2.0613 3.8015 5.2513 21 6 1.3905 3.4980 6.5861 22 6 -0.0601 3.9867 6.5526 23 6 -0.0835 5.4920 6.2799 24 6 0.5728 5.7782 4.9277 25 6 2.0257 5.2964 4.9552 26 6 1.4049 3.0236 4.1378 27 8 0.2458 3.1238 3.7974 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.5818 1.6876 -2.0283 34 1 2.0956 3.1410 -1.1384 35 1 3.6747 3.5148 -4.4447 36 1 0.9443 1.0114 2.5302 37 1 2.6227 0.4186 2.5299 38 1 4.2055 4.1068 5.0436 39 1 3.7515 2.8215 6.2090 40 1 1.4074 2.4229 6.7651 41 1 1.9269 4.0077 7.3864 42 1 -0.5343 3.7838 7.5129 43 1 -0.6011 3.4658 5.7627 44 1 0.4637 6.0120 7.0663 45 1 -1.1156 5.8421 6.2638 46 1 0.5490 6.8501 4.7317 47 1 0.0304 5.2527 4.1417 48 1 2.5718 5.8334 5.7309 49 1 2.4897 5.4860 3.9873 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080094767.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:37 Heat of formation + Delta-G solvation = -112.407708 kcal Electronic energy + Delta-G solvation = -31122.754682 eV Core-core repulsion = 27049.541017 eV Total energy + Delta-G solvation = -4073.213666 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.39035 -39.31327 -38.73634 -37.48696 -35.80612 -35.29788 -33.26973 -32.71724 -31.10257 -30.15099 -29.19732 -27.55395 -26.43050 -24.25338 -23.08424 -22.99875 -22.74521 -21.56038 -20.99417 -18.96895 -18.44171 -17.33424 -16.95807 -16.47300 -16.32692 -15.91344 -15.50241 -15.28902 -14.76173 -14.69206 -14.53578 -14.29983 -14.09221 -13.84242 -13.65540 -13.41738 -13.30765 -13.06124 -12.71627 -12.63001 -12.43952 -12.42219 -12.05477 -11.91309 -11.74720 -11.59867 -11.33971 -11.22300 -11.10046 -10.90339 -10.75896 -10.66832 -10.55617 -10.35225 -10.18776 -10.14152 -10.06654 -9.67513 -9.61902 -8.87310 -8.43578 -7.72660 -6.04310 -4.08858 1.56459 2.38867 2.77330 3.26388 3.30574 3.38329 3.43981 3.84619 3.89720 4.08422 4.18312 4.34799 4.45674 4.64565 4.86766 4.90794 4.94718 5.02210 5.11075 5.13250 5.17718 5.27953 5.30335 5.34291 5.36534 5.37785 5.40260 5.46004 5.57340 5.59718 5.69825 5.74691 5.76542 5.93382 6.00767 6.02984 6.09438 6.11457 6.20805 6.35062 6.47163 6.83977 7.01071 7.36288 7.41772 7.49971 7.80144 7.92173 8.22649 8.32858 8.85703 9.01012 9.56222 11.03849 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015074 B = 0.003403 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.111882 B = 8224.877246 C = 8548.199950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.103 3.897 3 N -0.591 5.591 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.497 3.503 14 O -0.533 6.533 15 C 0.076 3.924 16 N -0.555 5.555 17 C 0.531 3.469 18 O -0.478 6.478 19 C -0.149 4.149 20 C -0.090 4.090 21 C -0.097 4.097 22 C -0.130 4.130 23 C -0.113 4.113 24 C -0.131 4.131 25 C -0.100 4.100 26 C 0.544 3.456 27 O -0.470 6.470 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.034 0.966 34 H 0.043 0.957 35 H 0.263 0.737 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.063 0.937 43 H 0.080 0.920 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.887 -1.261 22.463 23.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 N -0.323 5.323 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.281 3.719 14 O -0.410 6.410 15 C -0.049 4.049 16 N -0.297 5.297 17 C 0.320 3.680 18 O -0.349 6.349 19 C -0.189 4.189 20 C -0.093 4.093 21 C -0.134 4.134 22 C -0.167 4.167 23 C -0.150 4.150 24 C -0.168 4.168 25 C -0.137 4.137 26 C 0.332 3.668 27 O -0.340 6.340 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.099 0.901 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.100 0.900 48 H 0.099 0.901 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.790 -0.873 21.865 22.911 hybrid contribution 1.026 -0.289 -0.678 1.263 sum -5.764 -1.162 21.187 21.988 Atomic orbital electron populations 1.22236 0.96502 1.01588 1.02546 1.21486 0.93703 0.84004 1.02919 1.48218 1.63346 1.13303 1.07477 1.19301 0.96417 0.93606 0.77814 1.21474 0.96843 1.31911 1.06242 0.92360 1.24930 0.97896 0.94890 0.96370 1.69946 1.35590 1.33538 1.14294 0.86443 0.84616 0.78101 0.78304 1.19730 1.20926 1.20873 1.20289 0.79176 0.87283 0.85144 1.90675 1.45581 1.17840 1.86899 1.21767 1.04383 0.93410 0.85334 1.46385 1.13316 1.38498 1.31520 1.20796 0.81390 0.82819 0.83018 1.90787 1.34848 1.44906 1.64312 1.22638 0.97511 0.99429 0.99326 1.21111 0.94441 0.98004 0.95756 1.21425 0.96774 1.01478 0.93756 1.21692 0.95830 0.96820 1.02403 1.21459 1.00620 0.95829 0.97139 1.21686 0.95203 1.01218 0.98683 1.21436 0.98566 0.90664 1.03068 1.20489 0.85345 0.78357 0.82569 1.90677 1.15623 1.63621 1.64128 0.91849 0.91949 0.92998 0.89504 0.91836 0.94786 0.93924 0.92780 0.86646 0.86584 0.85875 0.86206 0.91439 0.90055 0.91806 0.90124 0.92276 0.92004 0.91636 0.90035 0.90139 0.90655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 10.24 37.16 0.38 -1.93 16 2 C 0.10 1.66 5.93 -4.05 -0.02 1.64 16 3 N -0.59 -12.80 2.46 -175.06 -0.43 -13.23 16 4 C 0.25 6.59 5.16 -5.19 -0.03 6.57 16 5 C -0.53 -15.24 9.39 -34.44 -0.32 -15.56 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 9 Si 0.90 22.36 29.54 -169.99 -5.02 17.34 16 10 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 13 C 0.50 10.77 7.74 -10.98 -0.09 10.69 16 14 O -0.53 -13.84 16.01 5.56 0.09 -13.75 16 15 C 0.08 1.23 4.60 -5.19 -0.02 1.20 16 16 N -0.56 -8.55 2.05 -116.69 -0.24 -8.79 16 17 C 0.53 7.90 8.08 -10.99 -0.09 7.81 16 18 O -0.48 -8.73 17.48 5.60 0.10 -8.63 16 19 C -0.15 -1.45 6.30 -27.12 -0.17 -1.62 16 20 C -0.09 -0.91 0.68 -155.76 -0.11 -1.02 16 21 C -0.10 -0.73 4.54 -26.97 -0.12 -0.86 16 22 C -0.13 -1.10 5.67 -26.68 -0.15 -1.25 16 23 C -0.11 -0.94 5.90 -26.72 -0.16 -1.10 16 24 C -0.13 -1.36 5.67 -26.68 -0.15 -1.51 16 25 C -0.10 -1.00 4.54 -26.97 -0.12 -1.12 16 26 C 0.54 7.71 6.43 -11.24 -0.07 7.64 16 27 O -0.47 -7.57 13.32 5.61 0.07 -7.49 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.69 7.22 -51.93 -0.38 0.31 16 31 H 0.09 1.45 8.07 -51.93 -0.42 1.03 16 32 H 0.06 0.84 6.44 -51.93 -0.33 0.51 16 33 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 34 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.12 1.60 6.88 -51.93 -0.36 1.24 16 37 H 0.12 1.69 7.08 -51.93 -0.37 1.32 16 38 H 0.12 1.08 7.72 -51.93 -0.40 0.68 16 39 H 0.12 0.78 7.72 -51.93 -0.40 0.38 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.87 6.06 -51.93 -0.31 0.56 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.08 1.09 6.06 -51.93 -0.31 0.78 16 48 H 0.08 0.60 8.14 -51.92 -0.42 0.17 16 49 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 388.08 15.07 5.85 5.85 Total: -1.00 -36.64 388.08 -8.05 -44.68 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -7.86 Total: -1.00 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: -1.34 Total: 11.24 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: 0.07 Total: -48.22 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: 0.26 Total: -29.88 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.64 -8.05 -44.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080094767.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.723 kcal (2) G-P(sol) polarization free energy of solvation -36.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds