Wall clock time and date at job start Sat Apr 11 2020 04:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47241 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47303 * 119.99759 * 9 7 5 12 12 H 1.48495 * 109.47340 * 239.99921 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 N 1.46499 * 109.46992 * 179.97438 * 15 13 3 17 17 C 1.33952 * 122.78595 * 269.70808 * 16 15 13 18 18 O 1.21232 * 125.41406 * 359.96056 * 17 16 15 19 19 C 1.51445 * 109.17634 * 179.84259 * 17 16 15 20 20 C 1.53763 * 103.37279 * 0.38383 * 19 17 16 21 21 C 1.52440 * 110.30238 * 118.42167 * 20 19 17 22 22 C 1.53098 * 109.52656 * 181.11160 * 21 20 19 23 23 C 1.53003 * 109.41758 * 300.88446 * 22 21 20 24 24 C 1.53010 * 109.56680 * 60.41532 * 23 22 21 25 25 C 1.52437 * 110.30625 * 241.14069 * 20 19 17 26 26 C 1.34040 * 122.78111 * 89.99737 * 16 15 13 27 27 O 1.21223 * 125.49213 * 0.02562 * 26 16 15 28 28 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 29 29 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 31 31 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 32 32 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 33 33 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 34 34 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 35 35 H 0.97001 * 119.99961 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 37 37 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 38 38 H 1.09003 * 110.83087 * 241.82390 * 19 17 16 39 39 H 1.09000 * 110.45158 * 118.76685 * 19 17 16 40 40 H 1.09006 * 109.46696 * 301.12859 * 21 20 19 41 41 H 1.08997 * 109.46523 * 61.09356 * 21 20 19 42 42 H 1.09005 * 109.48374 * 180.90105 * 22 21 20 43 43 H 1.08996 * 109.49066 * 60.87019 * 22 21 20 44 44 H 1.09003 * 109.45406 * 300.39254 * 23 22 21 45 45 H 1.08995 * 109.45819 * 180.44561 * 23 22 21 46 46 H 1.09000 * 109.47871 * 179.59792 * 24 23 22 47 47 H 1.09001 * 109.48985 * 59.56829 * 24 23 22 48 48 H 1.09009 * 109.46383 * 298.90164 * 25 20 19 49 49 H 1.09005 * 109.46084 * 58.86342 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9132 2.0955 -3.4175 10 1 6.6009 1.2405 -2.4169 11 1 5.9202 1.4163 -4.7380 12 1 6.6210 3.3964 -3.5262 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 7 2.3100 2.2033 3.5858 17 6 3.5275 2.2681 4.1404 18 8 4.4895 1.6125 3.8020 19 6 3.5123 3.2927 5.2556 20 6 2.0613 3.8015 5.2513 21 6 1.3905 3.4980 6.5861 22 6 -0.0601 3.9867 6.5526 23 6 -0.0835 5.4920 6.2799 24 6 0.5728 5.7782 4.9277 25 6 2.0257 5.2964 4.9552 26 6 1.4049 3.0236 4.1378 27 8 0.2458 3.1238 3.7974 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.5818 1.6876 -2.0283 34 1 2.0956 3.1410 -1.1384 35 1 3.6747 3.5148 -4.4447 36 1 0.9443 1.0114 2.5302 37 1 2.6227 0.4186 2.5299 38 1 4.2055 4.1068 5.0436 39 1 3.7515 2.8215 6.2090 40 1 1.4074 2.4229 6.7651 41 1 1.9269 4.0077 7.3864 42 1 -0.5343 3.7838 7.5129 43 1 -0.6011 3.4658 5.7627 44 1 0.4637 6.0120 7.0663 45 1 -1.1156 5.8421 6.2638 46 1 0.5490 6.8501 4.7317 47 1 0.0304 5.2527 4.1417 48 1 2.5718 5.8334 5.7309 49 1 2.4897 5.4860 3.9873 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080094767.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:35 Heat of formation + Delta-G solvation = -136.413884 kcal Electronic energy + Delta-G solvation = -31123.795668 eV Core-core repulsion = 27049.541017 eV Total energy + Delta-G solvation = -4074.254652 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.44544 -40.81577 -40.00812 -38.45972 -37.19508 -36.85059 -35.03147 -34.08249 -31.79540 -31.75199 -30.53127 -28.87037 -27.92904 -25.41807 -24.87324 -24.20548 -23.70166 -22.52685 -21.94805 -20.35182 -19.63263 -18.80181 -18.55956 -18.27875 -17.45990 -17.26987 -16.98958 -16.37028 -16.26473 -16.06149 -15.69862 -15.63972 -15.00344 -14.95579 -14.80723 -14.71802 -14.53457 -14.31798 -14.13060 -13.74796 -13.50334 -13.44931 -13.30888 -13.15796 -13.14759 -13.07459 -12.75787 -12.58037 -12.47908 -12.24893 -12.07710 -12.00398 -11.90286 -11.76132 -11.60642 -11.47876 -11.04363 -11.02231 -10.70814 -10.65085 -10.51971 -9.58531 -8.28744 -6.43814 0.46116 1.22961 1.31556 1.34097 1.46314 1.58535 1.69363 2.24278 2.38490 2.99166 3.00708 3.13166 3.36504 3.44568 3.63465 3.85705 3.90071 3.91781 4.11270 4.16859 4.24731 4.26466 4.32503 4.33322 4.44624 4.53978 4.62401 4.67859 4.70501 4.70900 4.84934 4.89449 4.93504 4.96749 5.05868 5.10917 5.12190 5.25357 5.31486 5.32886 5.39150 5.40607 5.48890 5.60884 5.73705 5.74552 5.98485 6.27354 6.53417 6.65748 6.70331 7.15658 7.30929 8.78925 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015074 B = 0.003403 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.111882 B = 8224.877246 C = 8548.199950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.095 3.905 3 N -0.597 5.597 4 C 0.265 3.735 5 C -0.544 4.544 6 H 0.050 0.950 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.270 1.270 11 H -0.265 1.265 12 H -0.280 1.280 13 C 0.484 3.516 14 O -0.589 6.589 15 C 0.085 3.915 16 N -0.566 5.566 17 C 0.521 3.479 18 O -0.520 6.520 19 C -0.135 4.135 20 C -0.081 4.081 21 C -0.092 4.092 22 C -0.131 4.131 23 C -0.108 4.108 24 C -0.133 4.133 25 C -0.099 4.099 26 C 0.532 3.468 27 O -0.497 6.497 28 H 0.040 0.960 29 H 0.102 0.898 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.026 0.974 34 H -0.007 1.007 35 H 0.268 0.732 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.165 0.835 40 H 0.078 0.922 41 H 0.120 0.880 42 H 0.085 0.915 43 H 0.048 0.952 44 H 0.086 0.914 45 H 0.058 0.942 46 H 0.069 0.931 47 H 0.040 0.960 48 H 0.121 0.879 49 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.005 -2.248 25.746 26.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.027 4.027 3 N -0.328 5.328 4 C 0.144 3.856 5 C -0.583 4.583 6 H 0.068 0.932 7 C -0.190 4.190 8 N -0.566 5.566 9 Si 0.792 3.208 10 H -0.194 1.194 11 H -0.189 1.189 12 H -0.206 1.206 13 C 0.271 3.729 14 O -0.470 6.470 15 C -0.040 4.040 16 N -0.308 5.308 17 C 0.313 3.687 18 O -0.394 6.394 19 C -0.174 4.174 20 C -0.084 4.084 21 C -0.129 4.129 22 C -0.169 4.169 23 C -0.145 4.145 24 C -0.171 4.171 25 C -0.137 4.137 26 C 0.323 3.677 27 O -0.369 6.369 28 H 0.059 0.941 29 H 0.120 0.880 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.118 0.882 33 H 0.044 0.956 34 H 0.011 0.989 35 H 0.077 0.923 36 H 0.157 0.843 37 H 0.153 0.847 38 H 0.155 0.845 39 H 0.183 0.817 40 H 0.096 0.904 41 H 0.138 0.862 42 H 0.104 0.896 43 H 0.067 0.933 44 H 0.105 0.895 45 H 0.077 0.923 46 H 0.087 0.913 47 H 0.059 0.941 48 H 0.139 0.861 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.949 -1.896 25.170 25.933 hybrid contribution 0.654 0.047 -1.765 1.882 sum -5.295 -1.849 23.406 24.068 Atomic orbital electron populations 1.22160 0.94274 1.03846 1.01608 1.21859 0.95513 0.80975 1.04389 1.48260 1.63289 1.15282 1.06006 1.18722 0.95531 0.91317 0.80072 1.21692 0.97716 1.32254 1.06633 0.93166 1.25860 1.02524 0.94333 0.96305 1.70059 1.37705 1.34089 1.14761 0.85357 0.78809 0.78105 0.78483 1.19415 1.18942 1.20587 1.21316 0.77818 0.86919 0.86816 1.90631 1.48034 1.20415 1.87934 1.21699 1.06208 0.93413 0.82680 1.46719 1.14238 1.38739 1.31065 1.21766 0.80359 0.82924 0.83675 1.90757 1.35916 1.46835 1.65933 1.22805 0.97253 0.98245 0.99080 1.21230 0.94522 0.97073 0.95580 1.21528 0.96025 1.02735 0.92633 1.21689 0.96513 0.96356 1.02325 1.21446 1.00625 0.96256 0.96207 1.21674 0.95425 1.00907 0.99057 1.21489 0.98330 0.91152 1.02726 1.21399 0.84999 0.78058 0.83249 1.90667 1.16917 1.64176 1.65140 0.94085 0.87980 0.92647 0.90158 0.88204 0.95570 0.98865 0.92283 0.84263 0.84654 0.84548 0.81750 0.90354 0.86224 0.89612 0.93346 0.89504 0.92317 0.91273 0.94115 0.86114 0.93938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.24 10.24 71.98 0.74 -3.50 16 2 C 0.09 3.03 5.93 86.38 0.51 3.54 16 3 N -0.60 -26.99 2.46 -826.16 -2.03 -29.02 16 4 C 0.26 15.02 5.16 85.64 0.44 15.46 16 5 C -0.54 -32.83 9.39 25.60 0.24 -32.59 16 6 H 0.05 3.04 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.53 5.46 84.65 0.46 0.99 16 8 N -0.93 -57.56 13.29 21.45 0.28 -57.28 16 9 Si 0.97 46.56 29.54 68.60 2.03 48.58 16 10 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 13 C 0.48 21.97 7.74 87.66 0.68 22.65 16 14 O -0.59 -32.71 16.01 -3.03 -0.05 -32.76 16 15 C 0.09 2.75 4.60 85.63 0.39 3.15 16 16 N -0.57 -17.42 2.05 -760.80 -1.56 -18.98 16 17 C 0.52 15.09 8.08 88.02 0.71 15.80 16 18 O -0.52 -18.93 17.48 -2.88 -0.05 -18.98 16 19 C -0.14 -2.22 6.30 30.34 0.19 -2.03 16 20 C -0.08 -1.47 0.68 -52.99 -0.04 -1.51 16 21 C -0.09 -1.02 4.54 30.44 0.14 -0.88 16 22 C -0.13 -1.89 5.67 30.63 0.17 -1.71 16 23 C -0.11 -1.56 5.90 30.60 0.18 -1.38 16 24 C -0.13 -2.74 5.67 30.63 0.17 -2.57 16 25 C -0.10 -1.85 4.54 30.44 0.14 -1.72 16 26 C 0.53 15.10 6.43 87.82 0.56 15.67 16 27 O -0.50 -16.63 13.32 -2.85 -0.04 -16.67 16 28 H 0.04 1.25 8.14 -2.39 -0.02 1.24 16 29 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.05 1.42 7.22 -2.39 -0.02 1.40 16 31 H 0.08 2.68 8.07 -2.38 -0.02 2.66 16 32 H 0.10 2.47 6.44 -2.39 -0.02 2.46 16 33 H 0.03 1.50 8.07 -2.39 -0.02 1.48 16 34 H -0.01 -0.45 7.42 -2.39 -0.02 -0.46 16 35 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 36 H 0.14 3.77 6.88 -2.39 -0.02 3.75 16 37 H 0.14 3.82 7.08 -2.39 -0.02 3.80 16 38 H 0.14 1.98 7.72 -2.39 -0.02 1.96 16 39 H 0.16 1.27 7.72 -2.39 -0.02 1.26 16 40 H 0.08 0.75 8.14 -2.38 -0.02 0.74 16 41 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 43 H 0.05 1.02 6.06 -2.39 -0.01 1.01 16 44 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.04 1.17 6.06 -2.39 -0.01 1.15 16 48 H 0.12 1.30 8.14 -2.38 -0.02 1.28 16 49 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -88.04 388.08 5.23 -82.80 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.95 Total: 12.92 kcal Atomic # 6 Polarization: 23.68 SS G_CDS: 5.70 Total: 29.38 kcal Atomic # 7 Polarization: -101.98 SS G_CDS: -3.30 Total: -105.28 kcal Atomic # 8 Polarization: -68.27 SS G_CDS: -0.14 Total: -68.41 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.58 kcal Total: -88.04 5.23 -82.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080094767.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.612 kcal (2) G-P(sol) polarization free energy of solvation -88.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds